View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-3 (Length: 1002)
Name: NF4606-Insertion-3
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 805; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 134 - 1002
Target Start/End: Original strand, 38005509 - 38006374
Alignment:
| Q |
134 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactcg |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005509 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactca |
38005608 |
T |
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| Q |
234 |
aatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtttagatcagtcgcactgt |
333 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
38005609 |
aatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacgatgtttagatcagtcgcaccgt |
38005708 |
T |
|
| Q |
334 |
ttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatg |
433 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005709 |
ttttatttactactgctttgaattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatg |
38005808 |
T |
|
| Q |
434 |
cgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggagg |
533 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005809 |
cgcgtatagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggagg |
38005908 |
T |
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| Q |
534 |
acggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggaggg |
633 |
Q |
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| T |
38005909 |
acggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggaggg |
38006008 |
T |
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| Q |
634 |
tggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattg |
733 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38006009 |
tggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattg |
38006108 |
T |
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| Q |
734 |
gagtgcagactggattttatctgaggagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaag |
833 |
Q |
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| T |
38006109 |
gagtgcaaattggattttatctgaggagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaag |
38006208 |
T |
|
| Q |
834 |
agagggtggtgtgtttgtgaaatgagagagacaacgttgtaacgaatgagtttgtgttgttttgtgtaatggtggtaatgaataatgagaagagaaggcg |
933 |
Q |
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| T |
38006209 |
agagggtggtgtgtttgtgaaatgagagagacaacgttgtaacgaatgagtttgtgttgttttgtgtaatggtggtaatgaataatgag-agagaaggcg |
38006307 |
T |
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| Q |
934 |
taggttatggaggaaaattaggatcttagtttgtgttttgattccattaatcatctcctaaaagaataa |
1002 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |
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| T |
38006308 |
taggttatggaggaaaattaggatcttag-ttgtgttttgattccattaatcgtct-ctaaaagaataa |
38006374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 134 - 975
Target Start/End: Complemental strand, 26462304 - 26461477
Alignment:
| Q |
134 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactcg |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||| |||||||||||||| |
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| T |
26462304 |
atacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttcagatattttgctgtaaaacaactcg |
26462205 |
T |
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| Q |
234 |
aatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtttagatcagtcgcactgt |
333 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
26462204 |
aatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgatgtttagatcagttgcactgt |
26462105 |
T |
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| Q |
334 |
ttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatg |
433 |
Q |
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||||||| |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
26462104 |
ttttattgtttactactttggattcatgatacacgctagggtgtgtcatgtcagggatagtaatggtaacggcttcaccagcgcgtgacgttgtttcatg |
26462005 |
T |
|
| Q |
434 |
cgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggagg |
533 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||| |
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| T |
26462004 |
cgcgtagagagctaaaagaacagcttcaaacccggcttgcggttttctatcagcgacgcgtgagaggtaaacaccggcgataatcgggaggaaacgtagg |
26461905 |
T |
|
| Q |
534 |
acggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggaggg |
633 |
Q |
| |
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|||||||| ||||||||| || ||| |||||||||||||| |||||||||||||||||||||||||| || || |||||| |||||||||||||||||| |
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| T |
26461904 |
acggtgagttggagatcagtgatatttgattggaaagtgtcgtagagccaacgacaaagattgttgtcaccggcgccggagttgggttggcggaggaggg |
26461805 |
T |
|
| Q |
634 |
tggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattg |
733 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26461804 |
tggcgatttggttgtagatttcgggttcgttgaggatagagagaggggtggttgatgaggtaatggagagtgttggattgacgatggtgcaaagggattg |
26461705 |
T |
|
| Q |
734 |
gagtgcagactggattttatctgaggagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaag |
833 |
Q |
| |
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||| || || |||||||||||| ||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
26461704 |
gagagcggattggattttatctaaggtgtttggggtgaaggtgacggcggaggtagtggttgtggtggcggtggcttcgtcgtcagacattgt------- |
26461612 |
T |
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| Q |
834 |
agagggtggtgtgtttgtgaaatgagagagacaacgttgtaacgaatgagtttgtgttgttttgt--gtaatggtggtaatgaataatgagaagagaagg |
931 |
Q |
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||| |||||||| |||||||||||| ||||||||||||| || || |||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
26461611 |
-----gtgatgtgtttgagaaatgagagaggcaacgttgtaacg-atcag-ttgtgttgttttgtcaatggtggtggtaatgaataatgag-agagaagg |
26461520 |
T |
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| Q |
932 |
cgtaggttatggaggaaaattaggatcttagtttgtgttttgat |
975 |
Q |
| |
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|||| ||||||||| ||||||||||||||| |||||||||||| |
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| T |
26461519 |
cgtaagttatggagcaaaattaggatctta-attgtgttttgat |
26461477 |
T |
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