View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-4 (Length: 1000)
Name: NF4606-Insertion-4
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 50135438 - 50135181
Alignment:
| Q |
8 |
gatataatattacataaaatttaaaattataatcacccgtaaaaggaagaaagnnnnnnnnnncactacccagcaatatcaattcaacataaggggg-ta |
106 |
Q |
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| T |
50135438 |
gatataatattacttaaaagttaaaattataatcacccgtaaaaggaagaaagaaaaaaaaaacactacccatcaatatcaattcaacataagggtgcta |
50135339 |
T |
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| Q |
107 |
gtgtgcacagcttacaaagaaagaagggtaaaagtggaaaagcaaaagagtggatgtttcttttgcatttctacgctcaataggggagaagaagaataga |
206 |
Q |
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| T |
50135338 |
gtgtgcacagcttacaaagaaagaagggtaaaagtggaaaagcaaaagagtggatgtttcttttgcatttcttcgctcaataggggagaagaagaatagt |
50135239 |
T |
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| Q |
207 |
tatggggcccaaatatatttggtctctctcccctttttctctgttattccaaactgca |
264 |
Q |
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| T |
50135238 |
tatggggcccacgtatatttggtctctctcccatttttctctgctgttccaaactgca |
50135181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 31787780 - 31787922
Alignment:
| Q |
119 |
tacaaagaaagaagggtaaaagtggaaaagcaaaagagtggatgtttcttttgcatttctacgctcaataggggagaagaagaatagatatggggcccaa |
218 |
Q |
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| T |
31787780 |
tacaaagaaagaagggtaaaagtggaaaagcaaaagagttgaggtttctttagcatttcttcggtgtctagaggagaagaagagtagccatgggg-ccac |
31787878 |
T |
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| Q |
219 |
atatatttggtctctctcccctttttctctgttattccaaactg |
262 |
Q |
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| T |
31787879 |
atatatttggtctctctctcctttttctctgctgttccaaactg |
31787922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 28339967 - 28339934
Alignment:
| Q |
125 |
gaaagaagggtaaaagtggaaaagcaaaagagtg |
158 |
Q |
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| T |
28339967 |
gaaagaagggtaaaagtggaaaagcaaaagagtg |
28339934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 44791221 - 44791188
Alignment:
| Q |
125 |
gaaagaagggtaaaagtggaaaagcaaaagagtg |
158 |
Q |
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| T |
44791221 |
gaaagaagggtaaaagtggaaaagcaaaagagtg |
44791188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 41053995 - 41054138
Alignment:
| Q |
119 |
tacaaagaaagaagggtaaaagtggaaaagcaaaagagtggatgtttcttttgcatttctacgctcaataggggagaagaagaatagatatggggcccaa |
218 |
Q |
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| T |
41053995 |
tacaaagaaagaagggtaaaagtggaaaagcaaaagagtggaggtttcttttgcatttcttcgctgtctagaggagaaaaagagtagccatggggcccac |
41054094 |
T |
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| Q |
219 |
atatatttggtctctctcccctttttctctgttattccaaactg |
262 |
Q |
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| T |
41054095 |
atatatttggtctctctcccctttttctctgctgttccaaactg |
41054138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 17772360 - 17772217
Alignment:
| Q |
119 |
tacaaagaaagaagggtaaaagtggaaaagcaaaagagtggatgtttcttttgcatttctacgctcaataggggagaagaagaatagatatggggcccaa |
218 |
Q |
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| T |
17772360 |
tacaaagaaagaagggtaaaagtggaaaagcaaaagagtggaggtttcttctgcatttcttcgctgtctagaggagaagaggagtagccatggggcccac |
17772261 |
T |
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| Q |
219 |
atatatttggtctctctcccctttttctctgttattccaaactg |
262 |
Q |
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| T |
17772260 |
atatatttggtctctctctcctttttctctgctgttccaaactg |
17772217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 9903967 - 9903884
Alignment:
| Q |
187 |
taggggagaagaagaatagatatggggcccaaatatatttggtctctctcccctttttctctgttattccaaactgcagaaatg |
270 |
Q |
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| T |
9903967 |
taggagagaagaagaaaagctatgggactcacatatatttggtctctctcacctatttctctgctgttccaaaccgtagaaatg |
9903884 |
T |
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