View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4606-Insertion-5 (Length: 827)

Name: NF4606-Insertion-5
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4606-Insertion-5
NF4606-Insertion-5
[»] chr2 (32 HSPs)
chr2 (10-301)||(36598281-36598580)
chr2 (298-492)||(36598860-36599059)
chr2 (8-143)||(14920434-14920569)
chr2 (10-122)||(7487943-7488055)
chr2 (10-122)||(21736418-21736530)
chr2 (10-122)||(35172451-35172563)
chr2 (642-718)||(36597705-36597781)
chr2 (642-721)||(6288616-6288695)
chr2 (642-721)||(29941836-29941915)
chr2 (10-138)||(16155552-16155680)
chr2 (642-721)||(36599205-36599284)
chr2 (642-721)||(45547862-45547941)
chr2 (642-726)||(14919816-14919900)
chr2 (10-138)||(16146966-16147094)
chr2 (440-493)||(9039882-9039935)
chr2 (656-721)||(35171459-35171524)
chr2 (438-493)||(9035433-9035488)
chr2 (152-211)||(37981683-37981742)
chr2 (642-718)||(27979847-27979923)
chr2 (642-718)||(28066377-28066453)
chr2 (152-211)||(7488093-7488152)
chr2 (152-211)||(16155471-16155530)
chr2 (656-718)||(42626474-42626536)
chr2 (656-713)||(45497467-45497524)
chr2 (656-713)||(45505209-45505266)
chr2 (642-724)||(2289228-2289310)
chr2 (642-692)||(7487017-7487067)
chr2 (152-209)||(21736569-21736626)
chr2 (152-209)||(35172603-35172660)
chr2 (152-208)||(16146884-16146940)
chr2 (152-211)||(2288520-2288579)
chr2 (668-711)||(34027863-34027906)
[»] chr8 (19 HSPs)
chr8 (8-219)||(42366103-42366315)
chr8 (10-122)||(43489065-43489177)
chr8 (642-718)||(41385930-41386006)
chr8 (642-721)||(2113735-2113814)
chr8 (642-721)||(4656023-4656102)
chr8 (642-721)||(7148981-7149060)
chr8 (642-721)||(10795435-10795514)
chr8 (642-718)||(9458457-9458533)
chr8 (642-718)||(40264335-40264411)
chr8 (642-721)||(42275891-42275970)
chr8 (656-726)||(42366845-42366915)
chr8 (642-721)||(39371225-39371305)
chr8 (642-696)||(1605860-1605914)
chr8 (668-718)||(4302197-4302247)
chr8 (642-692)||(43489896-43489946)
chr8 (656-711)||(9209867-9209922)
chr8 (152-211)||(14061607-14061666)
chr8 (656-718)||(38805998-38806059)
chr8 (642-684)||(43604435-43604477)
[»] chr3 (34 HSPs)
chr3 (10-122)||(23697166-23697278)
chr3 (10-121)||(23715623-23715734)
chr3 (10-121)||(23734079-23734190)
chr3 (10-122)||(85910-86022)
chr3 (10-122)||(23753741-23753853)
chr3 (642-721)||(2124765-2124844)
chr3 (642-721)||(30589792-30589871)
chr3 (642-721)||(36054070-36054149)
chr3 (642-721)||(46223366-46223445)
chr3 (642-718)||(23697921-23697997)
chr3 (642-718)||(23716376-23716452)
chr3 (642-718)||(23734832-23734908)
chr3 (642-721)||(19551213-19551292)
chr3 (642-721)||(26556814-26556893)
chr3 (642-721)||(38628880-38628959)
chr3 (642-721)||(50899506-50899585)
chr3 (657-721)||(26004924-26004988)
chr3 (646-721)||(24149901-24149976)
chr3 (642-721)||(26292624-26292701)
chr3 (642-718)||(45214144-45214220)
chr3 (152-211)||(10216004-10216063)
chr3 (642-721)||(23754492-23754571)
chr3 (152-211)||(10104857-10104916)
chr3 (642-692)||(23360553-23360603)
chr3 (642-692)||(23367393-23367443)
chr3 (158-211)||(10104984-10105037)
chr3 (642-711)||(34290227-34290296)
chr3 (152-211)||(10225633-10225692)
chr3 (152-210)||(44042009-44042067)
chr3 (72-138)||(46749393-46749459)
chr3 (159-208)||(10055755-10055804)
chr3 (158-211)||(10216131-10216184)
chr3 (158-207)||(10225760-10225809)
chr3 (668-721)||(35731821-35731874)
[»] chr7 (20 HSPs)
chr7 (10-122)||(12253204-12253316)
chr7 (10-122)||(33474680-33474792)
chr7 (642-721)||(12252446-12252525)
chr7 (642-721)||(27417708-27417787)
chr7 (642-721)||(43056748-43056827)
chr7 (642-721)||(30111740-30111819)
chr7 (642-721)||(35089157-35089236)
chr7 (642-718)||(152811-152887)
chr7 (12-207)||(3634278-3634473)
chr7 (656-718)||(42677321-42677383)
chr7 (642-721)||(33475486-33475563)
chr7 (158-211)||(37042533-37042586)
chr7 (642-687)||(47912584-47912629)
chr7 (152-207)||(33474583-33474638)
chr7 (152-219)||(46037314-46037381)
chr7 (157-219)||(41060038-41060100)
chr7 (12-122)||(42678008-42678118)
chr7 (152-209)||(12253355-12253412)
chr7 (642-703)||(34114601-34114662)
chr7 (50-143)||(37042416-37042509)
[»] chr4 (23 HSPs)
chr4 (10-122)||(56397602-56397714)
chr4 (10-122)||(42315058-42315170)
chr4 (642-721)||(7820896-7820975)
chr4 (642-721)||(8583061-8583140)
chr4 (643-721)||(42217508-42217586)
chr4 (642-718)||(42315832-42315908)
chr4 (438-493)||(21128993-21129048)
chr4 (438-493)||(21134901-21134956)
chr4 (642-718)||(3434887-3434963)
chr4 (152-211)||(37370851-37370910)
chr4 (12-211)||(44646782-44646981)
chr4 (152-211)||(28100546-28100605)
chr4 (12-143)||(37370702-37370833)
chr4 (152-211)||(38230833-38230892)
chr4 (658-721)||(44930560-44930623)
chr4 (642-721)||(56398987-56399066)
chr4 (158-208)||(1848497-1848547)
chr4 (642-724)||(44647666-44647748)
chr4 (12-137)||(28100397-28100522)
chr4 (152-211)||(28847066-28847125)
chr4 (152-207)||(53271974-53272029)
chr4 (642-692)||(7808974-7809024)
chr4 (158-211)||(53594147-53594200)
[»] chr5 (22 HSPs)
chr5 (10-122)||(378392-378504)
chr5 (10-122)||(3604267-3604378)
chr5 (642-721)||(10553683-10553762)
chr5 (642-721)||(40411364-40411443)
chr5 (642-721)||(11632746-11632825)
chr5 (642-721)||(13949861-13949940)
chr5 (642-718)||(3603520-3603596)
chr5 (642-721)||(10553499-10553578)
chr5 (12-142)||(27786342-27786472)
chr5 (12-142)||(28594256-28594386)
chr5 (152-209)||(3604417-3604474)
chr5 (152-219)||(39753488-39753555)
chr5 (676-718)||(39755291-39755333)
chr5 (657-726)||(18677006-18677074)
chr5 (152-211)||(26795476-26795535)
chr5 (158-211)||(2276175-2276228)
chr5 (158-211)||(26795603-26795656)
chr5 (675-718)||(26629605-26629648)
chr5 (152-211)||(26806540-26806599)
chr5 (337-391)||(31707358-31707413)
chr5 (656-718)||(10572243-10572305)
chr5 (158-207)||(26806667-26806716)
[»] chr6 (8 HSPs)
chr6 (642-721)||(3109410-3109489)
chr6 (642-721)||(6475803-6475882)
chr6 (642-718)||(29864812-29864888)
chr6 (152-211)||(708976-709035)
chr6 (152-211)||(7100225-7100284)
chr6 (152-211)||(8794346-8794405)
chr6 (152-205)||(4653365-4653418)
chr6 (152-211)||(5957187-5957246)
[»] scaffold0153 (1 HSPs)
scaffold0153 (642-721)||(33885-33964)
[»] scaffold0016 (1 HSPs)
scaffold0016 (642-721)||(80853-80932)
[»] chr1 (16 HSPs)
chr1 (642-721)||(14389370-14389448)
chr1 (642-721)||(52706335-52706414)
chr1 (644-721)||(26881878-26881955)
chr1 (10-122)||(39758131-39758242)
chr1 (10-122)||(39763485-39763596)
chr1 (656-721)||(45535703-45535769)
chr1 (152-219)||(14555275-14555342)
chr1 (152-211)||(27198332-27198391)
chr1 (152-211)||(48194651-48194710)
chr1 (152-211)||(19007543-19007602)
chr1 (152-211)||(48203409-48203468)
chr1 (642-692)||(39758859-39758909)
chr1 (642-692)||(39764213-39764263)
chr1 (642-694)||(45319449-45319501)
chr1 (661-711)||(28038414-28038464)
chr1 (152-209)||(52179655-52179712)
[»] scaffold0237 (1 HSPs)
scaffold0237 (642-718)||(20507-20583)
[»] scaffold0287 (1 HSPs)
scaffold0287 (12-207)||(11612-11807)
[»] scaffold0472 (2 HSPs)
scaffold0472 (656-723)||(1012-1079)
scaffold0472 (12-122)||(1700-1810)
[»] scaffold0202 (1 HSPs)
scaffold0202 (656-711)||(15699-15754)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 5e-89; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 36598281 - 36598580
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36598281 tattttaaataaaaagtctcacacaatctatttcacagatgaattcattaaaatctctctaattttcaataccaagagacattttataagttcctagaaa 36598380  T
Q  110 tcttaattgaataataatggatttcgttgtattt--------nnnnnnnngtcttgattgaataccacaaaatttacttagattttataaaagttttgat 201  Q
    |||||||||||||  || ||||||||||||||||                 ||||||||||||||||||| ||||| ||| ||||||||||||| |||||    
T  36598381 tcttaattgaataccaacggatttcgttgtatttaaaaaaagtcttgattatcttgattgaataccacaatatttatttaaattttataaaagtcttgat 36598480  T
Q  202 taaataccaccaaactttctaggattagaccaagtgataagagacaataggaaactataggccatttgttttcaggacacaagtcatcttaagaaatact 301  Q
    |||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||||||||||| |  |||| |||||||||||||||||    
T  36598481 taaataccaccaaactttctaggattgggccaagtgataagaaacaagaggaaactataggccatttgttttcaagggacaattcatcttaagaaatact 36598580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 298 - 492
Target Start/End: Original strand, 36598860 - 36599059
Alignment:
Q  298 tactaatttttaagatgcatgataccattttgtggacaagaggaaactatagaccatttgtttt-aggctgtcatatttttgaaagtttatggagtctct 396  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  36598860 tactaatttttaagatggatgataccattttgtggacaagaggaaactatagaccgtttatttttaggctgtcatatttttgaaagtttatggagtctct 36598959  T
Q  397 tgttgggcaatggatggacataactattagatgataactat----tagagaatatctcctatagtttttgtttagatagcaacaaatcatatagttgact 492  Q
    ||||||||||||||||||||||||||||||| ||||| |||     ||| |||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  36598960 tgttgggcaatggatggacataactattagaggataattatcatgcagaaaatatctcctatagttattgtttagatagcaacaaattatagagttgact 36599059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 14920434 - 14920569
Alignment:
Q  8 tctattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctaga 107  Q
    ||||||||||||||||||||||| |||||||||| || | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14920434 tctattttaactaaaaagtctcacacaatctattccacaaatgaatccattaaaatctctctaattttcaataccaagagacattttataagttcctaga 14920533  T
Q  108 aatcttaattgaataataatggatttcgttgtattt 143  Q
    ||||| |||||||||  || ||||||||||||||||    
T  14920534 aatctcaattgaataccaacggatttcgttgtattt 14920569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 7487943 - 7488055
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || |||||||||||||||||| ||||||    
T  7487943 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaa 7488042  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  7488043 tcttaattgaata 7488055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 21736418 - 21736530
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || |||||||||||||| ||| ||||||    
T  21736418 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataaattcttagaaa 21736517  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  21736518 tcttaattgaata 21736530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 35172451 - 35172563
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || || ||||||||||||||| || |||    
T  35172451 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgaaacattttataagttcttataaa 35172550  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  35172551 tcttaattgaata 35172563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 36597705 - 36597781
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    |||||| ||||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36597705 aaaagattttgatgaattgtattgattttgtgagattttaaaagacattttttaaaagactttttacaattaagatt 36597781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 6288616 - 6288695
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  6288616 aaaagactttgttggattgtattgattttgtgggattttaaaaaactttttttaaaagactttttacaatcaagattctt 6288695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 29941915 - 29941836
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  29941915 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 29941836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 16155680 - 16155552
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    |||||||| |||||||||||| |||||| ||| |||| |||||||||||||||||  | |||| ||||||| ||||| |||||||| || ||| ||||||    
T  16155680 tattttaattaaaaagtctcacacaatcaattccataaatgaattcattaaaatccatttaatattcaataccaagaaacattttaaaatttcttagaaa 16155581  T
Q  110 tcttaattgaataataatggatttcgttg 138  Q
    ||| ||||||||   || |||||||||||    
T  16155580 tctcaattgaatgccaacggatttcgttg 16155552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 36599205 - 36599284
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    |||||||||| ||||||| |||| ||||| ||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  36599205 aaaagactttaatcgattatattgattttatggtattttaaaagattttttttaaaagactttttacaattaagattctt 36599284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 45547941 - 45547862
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  45547941 aaaagactttgttggattgtattgattttgtgagattttaaaagactttttttgaaagactttttacaatcaagattctt 45547862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 642 - 726
Target Start/End: Original strand, 14919816 - 14919900
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaatgc 726  Q
    |||||| |||| | ||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  14919816 aaaagattttgttggattgtattgattttgtgaaattttaaaagacattttttaaaagattttttacaatcaagattcttgatgc 14919900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 16147094 - 16146966
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    |||||||| |||||||||||| |||||| ||| |||| ||||||  |||||||||  | |||||||||||  ||| |||||||||| |||||| ||||||    
T  16147094 tattttaattaaaaagtctcacacaatccattccataaatgaatctattaaaatccgtttaattttcaatcccaacagacattttaaaagttcttagaaa 16146995  T
Q  110 tcttaattgaataataatggatttcgttg 138  Q
    ||| ||||||||   || |||||||||||    
T  16146994 tctcaattgaatgtcaacggatttcgttg 16146966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 9039935 - 9039882
Alignment:
Q  440 gagaatatctcctatagtttttgtttagatagcaacaaatcatatagttgactc 493  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  9039935 gagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactc 9039882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 656 - 721
Target Start/End: Original strand, 35171459 - 35171524
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||    
T  35171459 gattgtattgattttgtgagattttaaaagactttttttaaaagactttttacaatcaaaattctt 35171524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 9035488 - 9035433
Alignment:
Q  438 tagagaatatctcctatagtttttgtttagatagcaacaaatcatatagttgactc 493  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  9035488 tagagaatatctcctgtagttattgtttagatagcaacaaattatatagttgactc 9035433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 37981742 - 37981683
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  37981742 gtcttaattgaataccacaaaatttatttatattttataaaagttttgattgaataccac 37981683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 27979923 - 27979847
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    |||||||||||   ||||||||||||||| ||||| |||||||||| || |||||||||||||||| ||| ||||||    
T  27979923 aaaagactttgtgtgattgtattaattttatgggaatttaaaagactttatttaaaagactttttataatcaagatt 27979847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 28066453 - 28066377
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    |||||||||||   ||||||||||||||| ||||| |||||||||| || |||||||||||||||| ||| ||||||    
T  28066453 aaaagactttgtgtgattgtattaattttatgggaatttaaaagactttatttaaaagactttttataatcaagatt 28066377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 7488093 - 7488152
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||| |||||||| |||||||| |||||| ||||||||    
T  7488093 gtcttgattgaataccacaagatttatttagatttcataaaagtcttgattcaataccac 7488152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 16155530 - 16155471
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| ||||||||||||||||||||  || |||||||||||||||||||| ||||||||    
T  16155530 gtcttaattgaataccacaaaatttatataaattttataaaagttttgattgaataccac 16155471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 656 - 718
Target Start/End: Original strand, 42626474 - 42626536
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||| ||||  | |||||||||||||| |||||| |||||||||||||||||||||||    
T  42626474 gattgtattgatttattaggattttaaaagactttttttgaaagactttttacaattaagatt 42626536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 45497524 - 45497467
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaatta 713  Q
    ||||||||| ||||| || ||||||||||||| || ||||||||||||||||||||||    
T  45497524 gattgtattgattttttgagattttaaaagactttatttaaaagactttttacaatta 45497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 45505266 - 45505209
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaatta 713  Q
    ||||||||| ||||| || ||||||||||||| || ||||||||||||||||||||||    
T  45505266 gattgtattgattttttgagattttaaaagactttatttaaaagactttttacaatta 45505209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 724
Target Start/End: Complemental strand, 2289310 - 2289228
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaat 724  Q
    |||||||||||   ||||||||| ||||||  |||||||||||||| || || ||| ||||||||||||| |||||| |||||    
T  2289310 aaaagactttgtgtgattgtattgattttgatggattttaaaagactttattgaaaggactttttacaatcaagatttttaat 2289228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 692
Target Start/End: Original strand, 7487017 - 7487067
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  7487017 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 7487067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 21736569 - 21736626
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatacc 209  Q
    ||||||||||||||| |||| ||||| |||||||| |||||||| |||||| ||||||    
T  21736569 gtcttgattgaatacaacaagatttatttagatttcataaaagtattgattcaatacc 21736626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 35172603 - 35172660
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatacc 209  Q
    |||||||||||||||||||| ||||| |||||||  |||||||| |||||| ||||||    
T  35172603 gtcttgattgaataccacaagatttatttagattccataaaagtcttgattcaatacc 35172660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 16146940 - 16146884
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatac 208  Q
    ||||| ||||||||||||||||||||  || ||||||||||||| |||||| |||||    
T  16146940 gtcttaattgaataccacaaaatttatataaattttataaaagtcttgattgaatac 16146884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 2288579 - 2288520
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||| ||||  ||| ||||||||||||| |||||| ||||||||    
T  2288579 gtcttaattgaataccacaagatttgtttacattttataaaagtcttgattgaataccac 2288520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 711
Target Start/End: Original strand, 34027863 - 34027906
Alignment:
Q  668 tttgtgggattttaaaagacattttttaaaagactttttacaat 711  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||    
T  34027863 tttgttggattttaaaagactttttttaaatgactttttacaat 34027906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 42366315 - 42366103
Alignment:
Q  8 tctattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctaga 107  Q
    ||||||||||||||||||||||| |||||||||| || | |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  42366315 tctattttaactaaaaagtctcacacaatctattccacaaatgaatccattaaaatctgtctaattttcaataccaagagacattttataagttcctaga 42366216  T
Q  108 aatcttaattgaataataatggatttcgttgtattt-nnnnnnnngtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaat 206  Q
    ||||| || ||||||  || | |||||  |||||||         |||||||||||||||||||  ||||| | |||||||||||||||||||||| |||    
T  42366215 aatctcaaatgaataccaacgaatttcaatgtatttaaaaaaaaagtcttgattgaataccacatgatttattcagattttataaaagttttgattgaat 42366116  T
Q  207 accaccaaacttt 219  Q
    |||||||||||||    
T  42366115 accaccaaacttt 42366103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 43489177 - 43489065
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || |||||||||||||||||| ||||||    
T  43489177 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaa 43489078  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  43489077 tcttaattgaata 43489065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 41385930 - 41386006
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  41385930 aaaagactttgttggattgtattaattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 41386006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 2113814 - 2113735
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  2113814 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 2113735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 4656102 - 4656023
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  4656102 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 4656023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 7149060 - 7148981
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  7149060 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 7148981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 10795435 - 10795514
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  10795435 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 10795514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 9458533 - 9458457
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  9458533 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 9458457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 40264335 - 40264411
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  40264335 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 40264411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 42275970 - 42275891
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||    
T  42275970 aaaagactttgttggattgtattgattttgtggaattttaaaagactttttttgaaagactttttacaatcaagattctt 42275891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 726
Target Start/End: Complemental strand, 42366915 - 42366845
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaatgc 726  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||| |||||||||| ||||||||| ||||    
T  42366915 gattgtatttattttgtgagattttaaaagatattttttaaaagattttttacaatcaagattcttgatgc 42366845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 39371225 - 39371305
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagac-tttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||  |||||| |||||||||| |||||||||    
T  39371225 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttttggaaagacttttttacaatcaagattctt 39371305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 696
Target Start/End: Original strand, 1605860 - 1605914
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaa 696  Q
    |||||||||||   ||||||||| ||||||||||||||||||||||| |||||||    
T  1605860 aaaagactttgcaggattgtattgattttgtgggattttaaaagacaatttttaa 1605914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 4302197 - 4302247
Alignment:
Q  668 tttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||| |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  4302197 tttgttggattttaaaagacttttttcaaatgactttttacaattaagatt 4302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 692
Target Start/End: Complemental strand, 43489946 - 43489896
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  43489946 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 43489896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 711
Target Start/End: Complemental strand, 9209922 - 9209867
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaat 711  Q
    |||| |||| ||||||| |||||||||||||| ||||| ||| |||||||||||||    
T  9209922 gattatattgattttgttggattttaaaagacttttttcaaatgactttttacaat 9209867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 14061666 - 14061607
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||| ||| ||| ||||||| | |||||| ||||||||    
T  14061666 gtcttgattgaataccacaagatttatttatattctataaaaatcttgattgaataccac 14061607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 718
Target Start/End: Original strand, 38805998 - 38806059
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||| ||| | || ||||||||||||  ||||||||||||||||||||||| ||||||    
T  38805998 gattgtattgattctatgagattttaaaagat-ttttttaaaagactttttacaatcaagatt 38806059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 684
Target Start/End: Original strand, 43604435 - 43604477
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaa 684  Q
    ||||||||||| | ||||||||| |||||||||||||||||||    
T  43604435 aaaagactttgttggattgtattgattttgtgggattttaaaa 43604477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 23697278 - 23697166
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || |||||||||||||||||| ||||||    
T  23697278 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaa 23697179  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  23697178 tcttaattgaata 23697166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 23715734 - 23715623
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || |||||||||||||||||| ||||||    
T  23715734 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaa 23715635  T
Q  110 tcttaattgaat 121  Q
    ||||||||||||    
T  23715634 tcttaattgaat 23715623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 23734190 - 23734079
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || |||||||||||||||||| ||||||    
T  23734190 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaa 23734091  T
Q  110 tcttaattgaat 121  Q
    ||||||||||||    
T  23734090 tcttaattgaat 23734079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 86022 - 85910
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| || |||||||  |||||||||||||| || |||||||||||||||||| || |||    
T  86022 tattttaactaaaaagtctcacacaatccattacacaaatgaatccagtaaaatccgtctaattttcaataccacgagacattttataagttcttaaaaa 85923  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  85922 tcttaattgaata 85910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 23753853 - 23753741
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||  ||| || | |||||| ||||||||||  ||||| |||||||| || |||||||||||||||||| ||||||    
T  23753853 tattttaactaaaaagtctcacacaattcattacacaaatgaatccattaaaatccgtctaactttcaataccacgagacattttataagttcttagaaa 23753754  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  23753753 tcttaattgaata 23753741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 2124765 - 2124844
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  2124765 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 2124844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 30589871 - 30589792
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  30589871 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 30589792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 36054070 - 36054149
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  36054070 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttcaaagactttttacaatcaagattctt 36054149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 46223366 - 46223445
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  46223366 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttaaaagattttttacaatcaagattctt 46223445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 23697997 - 23697921
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23697997 aaaagactttgttggattgtattgattttgtgggatttcaaaagactttttttaaaagactttttacaatcaagatt 23697921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 23716452 - 23716376
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23716452 aaaagactttgttggattgtattgattttgtgggatttcaaaagactttttttaaaagactttttacaatcaagatt 23716376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 23734908 - 23734832
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23734908 aaaagactttgttggattgtattgattttgtgggatttcaaaagactttttttaaaagactttttacaatcaagatt 23734832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 19551213 - 19551292
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||  | ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  19551213 aaaagactttattggattgtattgattttgtgggattttaaaagattttttttaaaagactttttacaatcaagattctt 19551292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 26556893 - 26556814
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||| || |||||||||    
T  26556893 aaaagactttgttcgattgtattgattttgtgggattttaaaagactttttttgaaagactttctacgatcaagattctt 26556814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 38628880 - 38628959
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| |  |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  38628880 aaaagactttgttgaattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 38628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 50899506 - 50899585
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||    
T  50899506 aaaagactttgttggattgtattgattttgtcggattttaaaagactttttttgaaagactttttacaatcaagattctt 50899585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 657 - 721
Target Start/End: Original strand, 26004924 - 26004988
Alignment:
Q  657 attgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  26004924 attgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 26004988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 646 - 721
Target Start/End: Original strand, 24149901 - 24149976
Alignment:
Q  646 gactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||| | |||| |||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  24149901 gactttgttggattatattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 24149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 26292624 - 26292701
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | |||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||    
T  26292624 aaaagactttgttggattgtatta-ttttgtggaattttaaaagactttttttaaa-gactttttacaatcaagattctt 26292701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 45214144 - 45214220
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    |||||||||||   ||||||||| |||||||| ||||||||||||| || |||||||| ||||||||||| ||||||    
T  45214144 aaaagactttgtgtgattgtattgattttgtgagattttaaaagactttatttaaaaggctttttacaatcaagatt 45214220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 10216004 - 10216063
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  10216004 gtcttaattgaataccacaagatttatttatattttataaaagttttgattgaataccac 10216063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 23754571 - 23754492
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||| |||| || ||||||  ||||||||||||||| ||| |||||    
T  23754571 aaaagactttgttggattgtattgattttgtgggatttcaaaatactttttttggaagactttttacaatcaaggttctt 23754492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 10104857 - 10104916
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| ||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||||    
T  10104857 gtcttaattgaatactacaagatttatttatattttataaaagttttgattgaataccac 10104916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 692
Target Start/End: Complemental strand, 23360603 - 23360553
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  23360603 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 23360553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 692
Target Start/End: Complemental strand, 23367443 - 23367393
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  23367443 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 23367393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 10104984 - 10105037
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  10104984 attgaataccacaagatttatttatattttataaaagtcttgattgaataccac 10105037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 711
Target Start/End: Original strand, 34290227 - 34290296
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaat 711  Q
    |||||||||||   ||||||||| ||||| |||||||||||||||| ||||| ||| || ||||||||||    
T  34290227 aaaagactttgtgtgattgtattgattttatgggattttaaaagacttttttaaaatgattttttacaat 34290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 10225633 - 10225692
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| ||||||||| |||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  10225633 gtcttaattgaatactacaagatttatttatattttataaaagtcttgattgaataccac 10225692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 44042009 - 44042067
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatacca 210  Q
    ||||| |||||||||||||| ||||| ||| ||| ||||||||| |||||| |||||||    
T  44042009 gtcttaattgaataccacaagatttatttatattctataaaagtcttgattgaatacca 44042067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 46749459 - 46749393
Alignment:
Q  72 ttttcaatatcaagagacattttataagttcctagaaatcttaattgaataataatggatttcgttg 138  Q
    |||| |||| ||| ||||||||||||||||   ||||||||||||||||||  || |||||||||||    
T  46749459 tttttaatagcaacagacattttataagttgtgagaaatcttaattgaatatcaacggatttcgttg 46749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 10055755 - 10055804
Alignment:
Q  159 ttgaataccacaaaatttacttagattttataaaagttttgattaaatac 208  Q
    ||||||||||||| ||||| ||| ||||||||||||| |||||| |||||    
T  10055755 ttgaataccacaagatttatttatattttataaaagtcttgattgaatac 10055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 10216131 - 10216184
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||||||| |||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  10216131 attgaatacgacaagatttatttatattttataaaagtcttgattgaataccac 10216184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 10225760 - 10225809
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaata 207  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||| ||||    
T  10225760 attgaataccacaagatttatttatattttataaaagtcttgattgaata 10225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 35731874 - 35731821
Alignment:
Q  668 tttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||| |||||||||||||  |||||| ||||||||||||| || |||||||||    
T  35731874 tttgttggattttaaaagattttttttgaaagactttttacgatcaagattctt 35731821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 12253204 - 12253316
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| |||||||||   |||||||||||||| || |||||||||||||||||| ||||||    
T  12253204 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaattcgtctaattttcaataccatgagacattttataagttcttagaaa 12253303  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  12253304 tcttaattgaata 12253316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 33474792 - 33474680
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | ||||||  |||||||||  |||||||||||||| ||  ||| ||||||||||||| ||||||    
T  33474792 tattttaactaaaaagtctcacacaatccattacacaaatgaatcaattaaaatccgtctaattttcaataccacaagatattttataagttcttagaaa 33474693  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  33474692 tcttaattgaata 33474680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 12252446 - 12252525
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  12252446 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 12252525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 27417708 - 27417787
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  27417708 aaaagactttgttagattgtattgattttgtgggattttaaaagactttttttcaaagactttttacaatcaagattctt 27417787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 43056748 - 43056827
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  43056748 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 43056827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 30111819 - 30111740
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||| |||||||||    
T  30111819 aaaagactttgttggattgtattgattttgtgggattttaaaaaactttttttcaaagactttttacaatcaagattctt 30111740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 35089157 - 35089236
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  35089157 aaaagactttgttggattgtattgattttgtgagattttaaaagactttttttgaaagactttttacaatcaagattctt 35089236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 152887 - 152811
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||| ||||||    
T  152887 aaaagactttgttggattgtattgattttgtaggattttaaaagactttttttgaaagactttttacaatcaagatt 152811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 3634473 - 3634278
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||  | |||| ||| |||| | |||| ||| ||||||  |  | |||| |||| ||| | ||||||||||||||   |||||||    
T  3634473 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaatc 3634374  T
Q  112 ttaattgaataataatggatttcgttgtatttnnnnnnnngtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaata 207  Q
    |||||||||||  || ||||| ||||| |||         || |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||    
T  3634373 ttaattgaataccaacggattccgttgcattgtaaaaaaagttttgattgaataccataaaatttacttatattttataaaagtcttgattgaata 3634278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 656 - 718
Target Start/End: Original strand, 42677321 - 42677383
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||||| ||||    
T  42677321 gattgtattgattttgtggaattttaaaagactttatttaaaagacttttcacaattaggatt 42677383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 33475563 - 33475486
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||  |||||||||||| |||||| ||||||  |||||||| |||||||||    
T  33475563 aaaagactttgttggattgtattgattttgtgaaattttaaaagactttttttgaaagac--tttacaatcaagattctt 33475486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 37042533 - 37042586
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||| | ||||||||||||||| | |||||| ||||||||    
T  37042533 attgaataccacaaaattaatttagattttataaaaatcttgattgaataccac 37042586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 687
Target Start/End: Original strand, 47912584 - 47912629
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagac 687  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||    
T  47912584 aaaagactttgttggattgtattgattttgtgggattttaaaagac 47912629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 33474638 - 33474583
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaata 207  Q
    |||||||||||||||||||| ||||| |||||||  |||||||| |||||| ||||    
T  33474638 gtcttgattgaataccacaagatttatttagattccataaaagtcttgattcaata 33474583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 46037314 - 46037381
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccaccaaacttt 219  Q
    |||||||||||||| ||||| ||||  ||| ||||||||||||| |||||| |||| ||| |||||||    
T  46037314 gtcttgattgaatatcacaagatttgtttacattttataaaagtcttgattgaatatcactaaacttt 46037381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 41060100 - 41060038
Alignment:
Q  157 gattgaataccacaaaatttacttagattttataaaagttttgattaaataccaccaaacttt 219  Q
    ||||||||||||||| ||||| ||| |||| |||||| | |||||| |||||||| |||||||    
T  41060100 gattgaataccacaagatttatttatatttaataaaaatcttgattgaataccacaaaacttt 41060038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 42678008 - 42678118
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||| | |||| |||  | | | |||| |||||||||||    | |||| |||| ||| ||||||||||||||||  || |||||    
T  42678008 ttttaactaaaaagtctcataaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatc 42678107  T
Q  112 ttaattgaata 122  Q
    |||||||||||    
T  42678108 ttaattgaata 42678118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 12253355 - 12253412
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatacc 209  Q
    ||||||||||||||||| || ||||| |||||||  |||||||| |||||| ||||||    
T  12253355 gtcttgattgaataccataagatttatttagattccataaaagtcttgattcaatacc 12253412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 703
Target Start/End: Original strand, 34114601 - 34114662
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactt 703  Q
    |||||||||||   ||||||||| ||||||  |||||||||||||| || ||||||||||||    
T  34114601 aaaagactttgtgtgattgtattgattttgaaggattttaaaagactttgtttaaaagactt 34114662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 37042416 - 37042509
Alignment:
Q  50 gaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatcttaattgaataataatggatttcgttgtattt 143  Q
    ||||||||| |||||| | || |||| |||| || |||| | ||||||||||   |||||||||||||||||| ||  ||||||||||| ||||    
T  37042416 gaattcatttaaatctatgtatttttgaataccatgagataatttataagttgtgagaaatcttaattgaatactaccggatttcgttgcattt 37042509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 56397714 - 56397602
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||  |||||||||||||| || ||||||| |||||||||| ||||||    
T  56397714 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacatgttataagttcttagaaa 56397615  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  56397614 tcttaattgaata 56397602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 42315170 - 42315058
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||||||||||||||||||| |||||| ||| || | |||||| |||| |||||  |||||||||||||| || |||||||||||||||||  ||||||    
T  42315170 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattgaaatccgtctaattttcaataccacgagacattttataagtttttagaaa 42315071  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  42315070 tcttaattgaata 42315058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 7820975 - 7820896
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||    
T  7820975 aaaagactttgttggattgtattgattttgtaggattttaaaagactttttttgaaagactttttacaatcaagattctt 7820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 8583061 - 8583140
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  8583061 aaaagactttgttggattgtattgattttgtgggattttaaaagattttttttgaaagactttttacaatcaagattctt 8583140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 643 - 721
Target Start/End: Original strand, 42217508 - 42217586
Alignment:
Q  643 aaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    |||||||||| | ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| || |||||||||    
T  42217508 aaagactttgttggattgtattgattttgtgggattttaaaagactttttttaaaatactttttacgatcaagattctt 42217586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 642 - 718
Target Start/End: Complemental strand, 42315908 - 42315832
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||| ||||||    
T  42315908 aaaagactttgttggattgtattgattttgtgggattttaaaacactttttttgaaagactttttacaatcaagatt 42315832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 21128993 - 21129048
Alignment:
Q  438 tagagaatatctcctatagtttttgtttagatagcaacaaatcatatagttgactc 493  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21128993 tagagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactc 21129048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 21134901 - 21134956
Alignment:
Q  438 tagagaatatctcctatagtttttgtttagatagcaacaaatcatatagttgactc 493  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21134901 tagagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactc 21134956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 3434887 - 3434963
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||  |||||| |||||||||||||||| ||||||    
T  3434887 aaaagactttgttggattgtattgattttgtggaattttaaaagattttttttgaaagactttttacaatcaagatt 3434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 37370851 - 37370910
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  37370851 gtcttaattgaataccacaagatttatttatattttataaaagttttgattgaataccac 37370910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 44646981 - 44646782
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||| | | |||  |||  ||| | ||||||||||||||||    | |||| |||| ||| |||||||||| |||||  || |||||    
T  44646981 ttttaactaaaaagtcttataaaattcattctataaaagaattcattaaaatctgcagatttttgaataccaatagacattttaaaagttggtacaaatc 44646882  T
Q  112 ttaattgaataataatggatttcgttgtatttnnnnnnnngtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||||||||| ||  |||||| ||||| ||         ||||||||||||||||| || ||||| |||  |||||||||||| |||||| ||||||||    
T  44646881 ttaattgaatactatgggatttggttgtcttgaataaaaagtcttgattgaataccataagatttatttatgttttataaaagtcttgattgaataccac 44646782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 28100546 - 28100605
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||||||||||||||| || ||||| ||| ||||||||||||| |||||| ||||||||    
T  28100546 gtcttgattgaataccataagatttatttatattttataaaagtcttgattgaataccac 28100605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 37370702 - 37370833
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||| ||||||||| | |||| ||| |||| | |||| ||||||||||| || | |||| |||| | |  |||||||||||||||   |||||||    
T  37370702 ttttaactataaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaaggacattttataagttgtgagaaatc 37370801  T
Q  112 ttaattgaataataatggatttcgttgtattt 143  Q
    |||||||||||  ||   ||||||||||||||    
T  37370802 ttaattgaatagcaacaaatttcgttgtattt 37370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 38230892 - 38230833
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||  ||| ||||||||||||| |||||| ||||||||    
T  38230892 gtcttgattgaataccacaagatttgtttaaattttataaaagtcttgattgaataccac 38230833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 658 - 721
Target Start/End: Complemental strand, 44930623 - 44930560
Alignment:
Q  658 ttgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||| ||||| ||| |||||||||||| |||||| ||||||||| |||||| |||||||||    
T  44930623 ttgtattgattttatggaattttaaaagactttttttgaaagactttctacaatcaagattctt 44930560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 56399066 - 56398987
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| |  ||| |||| |||||||| |||||| ||| || |||||| |||||||||||||||| |||||||||    
T  56399066 aaaagactttgttgaattttattgattttgtgagatttttaaaaactttttttgaaagactttttacaatcaagattctt 56398987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 1848497 - 1848547
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaatac 208  Q
    |||||||||||||| ||||| ||| ||||||||||||| ||||||||||||    
T  1848497 attgaataccacaagatttatttatattttataaaagtcttgattaaatac 1848547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 724
Target Start/End: Complemental strand, 44647748 - 44647666
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaat 724  Q
    |||||||||||   |||||| || ||||||||||||||| | |||| || ||| |||||||||||||||| |||||| |||||    
T  44647748 aaaagactttgtgtgattgtgttgattttgtgggattttgatagactttattttaaagactttttacaatcaagatttttaat 44647666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 28100397 - 28100522
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||  | |||| ||| |||| | |||| ||| ||||||| |  | |||| ||||  || ||||||||||||||||   |||||||    
T  28100397 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatctattaatttttgaatactaaaagacattttataagttgtgagaaatc 28100496  T
Q  112 ttaattgaataataatggatttcgtt 137  Q
    |||||||||||  || ||||||||||    
T  28100497 ttaattgaatatcaacggatttcgtt 28100522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 28847066 - 28847125
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||| ||||| ||  |||| ||||||||||||||| ||||||||    
T  28847066 gtcttaattgaataccacaagatttattttcatttcataaaagttttgattgaataccac 28847125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 53272029 - 53271974
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaata 207  Q
    |||||||||||||||||||| ||||| ||| ||| ||||||||| |||||| ||||    
T  53272029 gtcttgattgaataccacaatatttatttatattatataaaagtcttgattgaata 53271974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 692
Target Start/End: Complemental strand, 7809024 - 7808974
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| ||||    
T  7809024 aaaagactttgttggattgtattgattttgtaggattttaaaagacttttt 7808974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 53594200 - 53594147
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||| ||||| ||| ||||||||||| |||||||| ||| ||||    
T  53594200 attgaataccacaagatttatttatattttataaaatttttgattgaatgccac 53594147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 378504 - 378392
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||| ||||||||||| ||| |||||| ||| |||||| |||| ||||||||||| || ||||||||| ||| ||||||||||||||||||| ||||||    
T  378504 tatttcaactaaaaagtttcacacaatccattccatagaagaatccattaaaatctatcaaattttcaacatcgagagacattttataagttcttagaaa 378405  T
Q  110 tcttaattgaata 122  Q
    ||| |||||||||    
T  378404 tctcaattgaata 378392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 3604267 - 3604378
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    |||||||||||||| |||||| |||||| ||| |  | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||| || |||    
T  3604267 tattttaactaaaa-gtctcacacaatccattacgcaaatgaatccattaaaatctgtctaattttcaataccacgagacattttataagttcttaaaaa 3604365  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  3604366 tcttaattgaata 3604378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 10553762 - 10553683
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  10553762 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 10553683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 40411443 - 40411364
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  40411443 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 40411364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 11632746 - 11632825
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||| |||||||||    
T  11632746 aaaagactttgttggattgtattgattttgtgggattttaaaatactttttttgaaagactttttacaatcaagattctt 11632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 13949861 - 13949940
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||    
T  13949861 aaaagactttgttggattgtattgattttgtgggattataaaagactttttttgaaagactttttacaatcaagattctt 13949940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 3603520 - 3603596
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||  |||||| |||||||||||||||| ||||||    
T  3603520 aaaagactttgttggattgtattgattttgtggaattttaaaagattttttttgaaagactttttacaatcaagatt 3603596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 10553499 - 10553578
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| | |  |||| |||||||||||||||| |||||||||    
T  10553499 aaaagactttgttggattgtattgattttgtgggattttaaaaaaaaaattttgaaagactttttacaatcaagattctt 10553578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 27786472 - 27786342
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||| | |||| ||| |||| | |||| ||||||||||| || | |||| |||| | |  |||||||||||||||   |||||||    
T  27786472 ttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaatgacattttataagttgtgagaaatc 27786373  T
Q  112 ttaattgaataataatggatttcgttgtatt 142  Q
     |||||||||||| | |||||||||| ||||    
T  27786372 ataattgaataatgacggatttcgttatatt 27786342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 28594256 - 28594386
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||| | |||| |||  ||| | |||| ||||||||||| || | |||| |||| | | ||||||||||||||||   |||||||    
T  28594256 ttttaactaaaaagtctcacaaaatccattatataaaagaatccattaaaatctatcaatttttgaataccgaaagacattttataagttgtgagaaatc 28594355  T
Q  112 ttaattgaataataatggatttcgttgtatt 142  Q
     ||||||||||  || |||||||||||||||    
T  28594356 ctaattgaataccaacggatttcgttgtatt 28594386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 3604417 - 3604474
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatacc 209  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  3604417 gtcttgattgaataccacaagatttatttagatttcataaaagttttgattcaatacc 3604474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 39753555 - 39753488
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccaccaaacttt 219  Q
    |||||||||||||| ||||| ||||  ||| ||||||||||||| |||||| ||||||||||||||||    
T  39753555 gtcttgattgaatatcacaagatttttttatattttataaaagtcttgattgaataccaccaaacttt 39753488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 718
Target Start/End: Complemental strand, 39755333 - 39755291
Alignment:
Q  676 attttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  39755333 attttaaaagatattttttaaaagactttttacaattaagatt 39755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 726
Target Start/End: Original strand, 18677006 - 18677074
Alignment:
Q  657 attgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaatgc 726  Q
    |||||| | ||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||| ||||    
T  18677006 attgtagtgattttgtgggattttaaaa-acagtttttaaaagacttcttacaatcaagattcttgatgc 18677074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 26795476 - 26795535
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| ||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||||    
T  26795476 gtcttaattgaatactacaagatttatttatattttataaaagttttgattgaataccac 26795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 2276175 - 2276228
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  2276175 attgaataccacaagatttatttacattttataaaagtcttgattgaataccac 2276228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 26795603 - 26795656
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  26795603 attgaataccacaagatttatttatattttataaaagtcttgattgaataccac 26795656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 718
Target Start/End: Original strand, 26629605 - 26629648
Alignment:
Q  675 gattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||    
T  26629605 gattttaaaagacttgttttaaaagactttttacaatcaagatt 26629648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 26806540 - 26806599
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| ||||||||| |||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  26806540 gtcttaattgaatactacaagatttatttatattttataaaagtcttgattgaataccac 26806599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 31707413 - 31707358
Alignment:
Q  337 gaggaaactatagaccatttg-ttttaggctgtcatatttttgaaagtttatggag 391  Q
    ||||||||||||||||||||| |||| || ||||||||||||| ||| ||||||||    
T  31707413 gaggaaactatagaccatttgattttgggttgtcatatttttggaagcttatggag 31707358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 718
Target Start/End: Complemental strand, 10572305 - 10572243
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    |||| |||| ||| |||| ||| ||||||||| ||||||||||||||||||||| | ||||||    
T  10572305 gattctattgattctgtgagatattaaaagactttttttaaaagactttttacactcaagatt 10572243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 26806667 - 26806716
Alignment:
Q  158 attgaataccacaaaatttacttagattttataaaagttttgattaaata 207  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||| ||||    
T  26806667 attgaataccacaagatttatttatattttataaaagtcttgattgaata 26806716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 3109410 - 3109489
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  3109410 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaattaagattctt 3109489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 6475803 - 6475882
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  6475803 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 6475882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 29864812 - 29864888
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  29864812 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 29864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 709035 - 708976
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  709035 gtcttgattgaataccacaagatttatttacattttataaaagttttgattgaataccac 708976  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 7100284 - 7100225
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||  ||||||||||||||||| |||||| ||||||||    
T  7100284 gtcttgattgaataccacaagatttgtttagattttataaaagtcttgattgaataccac 7100225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 8794346 - 8794405
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||  ||||||||||||||||| |||||| ||||||||    
T  8794346 gtcttgattgaataccacaagatttgtttagattttataaaagtcttgattgaataccac 8794405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 4653418 - 4653365
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaa 205  Q
    ||||| |||||||||||||| ||||| ||| ||||||||||||| |||||||||    
T  4653418 gtcttaattgaataccacaagatttatttacattttataaaagtcttgattaaa 4653365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 5957246 - 5957187
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||| ||||  ||| ||||||||||||| |||||| ||||||||    
T  5957246 gtcttaattgaataccacaagatttgtttacattttataaaagtcttgattgaataccac 5957187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 33885 - 33964
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  33885 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 33964  T

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Target: scaffold0016 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 80853 - 80932
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  80853 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 80932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 14389448 - 14389370
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  14389448 aaaagactttgttggattgtattgattttgtgggattttaaaagac-ttttttaaaagactttttacaatcaagattctt 14389370  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 721
Target Start/End: Complemental strand, 52706414 - 52706335
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||    
T  52706414 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagattttttacaatcaagattctt 52706335  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 644 - 721
Target Start/End: Original strand, 26881878 - 26881955
Alignment:
Q  644 aagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 721  Q
    ||||||||| | ||||||||| |||||||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  26881878 aagactttgttggattgtattgattttgtgggattttaaaagattttttttgaaagactttttacaatcaagattctt 26881955  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 39758242 - 39758131
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||| ||||||||||||||| |||||| ||| |  | |||||| |||||||||||   || ||||||||| ||| ||||||||||||||||| ||||||    
T  39758242 tatttcaactaaaaagtctcacacaatccattccccaaatgaatccattaaaatctgcata-ttttcaataccaaaagacattttataagttcttagaaa 39758144  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  39758143 tcttaattgaata 39758131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 39763596 - 39763485
Alignment:
Q  10 tattttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaa 109  Q
    ||||| ||||||||||||||| |||||| ||| |  | |||||| |||||||||||   || ||||||||| ||| ||||||||||||||||| ||||||    
T  39763596 tatttcaactaaaaagtctcacacaatccattccccaaatgaatccattaaaatctgcata-ttttcaataccaaaagacattttataagttcttagaaa 39763498  T
Q  110 tcttaattgaata 122  Q
    |||||||||||||    
T  39763497 tcttaattgaata 39763485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 656 - 721
Target Start/End: Complemental strand, 45535769 - 45535703
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagac-attttttaaaagactttttacaattaagattctt 721  Q
    ||||||||| ||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  45535769 gattgtattgattttgtgggattttaaaagacttttttttgaaagactttttacaatcaagattctt 45535703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 14555275 - 14555342
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccaccaaacttt 219  Q
    ||||| ||||||||||||||| |||  ||| ||||||||||||| |||||| ||||||||||||||||    
T  14555275 gtcttaattgaataccacaaattttttttatattttataaaagtcttgattgaataccaccaaacttt 14555342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 27198391 - 27198332
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    ||||| |||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  27198391 gtcttaattgaataccacaagatttatttatattttataaaagttttgattgaataccac 27198332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 48194710 - 48194651
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||  ||||||||||||||||| |||||| ||||||||    
T  48194710 gtcttgattgaataccacaagatttgtttagattttataaaagtcttgattgaataccac 48194651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 19007543 - 19007602
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||  ||| ||||||||||||| |||||| ||||||||    
T  19007543 gtcttgattgaataccacaagatttgtttacattttataaaagtcttgattgaataccac 19007602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 48203468 - 48203409
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaataccac 211  Q
    |||||||||||||||||||| ||||  ||| ||||||||||||| |||||| ||||||||    
T  48203468 gtcttgattgaataccacaagatttgtttatattttataaaagtcttgattgaataccac 48203409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 692
Target Start/End: Complemental strand, 39758909 - 39758859
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  39758909 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 39758859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 692
Target Start/End: Complemental strand, 39764263 - 39764213
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 692  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  39764263 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 39764213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 642 - 694
Target Start/End: Complemental strand, 45319501 - 45319449
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttttt 694  Q
    ||||||||||| | ||||||||| |||||| ||||||||||||||| ||||||    
T  45319501 aaaagactttgttggattgtattgattttgcgggattttaaaagacttttttt 45319449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 661 - 711
Target Start/End: Original strand, 28038414 - 28038464
Alignment:
Q  661 tattaattttgtgggattttaaaagacattttttaaaagactttttacaat 711  Q
    |||| ||||| | |||||||||||||| ||||||||| |||||||||||||    
T  28038414 tattgattttataggattttaaaagactttttttaaatgactttttacaat 28038464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 52179655 - 52179712
Alignment:
Q  152 gtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaatacc 209  Q
    ||||| |||||||||||||| ||||| ||| ||||||||||||| || ||| ||||||    
T  52179655 gtcttaattgaataccacaagatttatttatattttataaaagtctttattgaatacc 52179712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 20507 - 20583
Alignment:
Q  642 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 718  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  20507 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 20583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 11612 - 11807
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||  | |||| ||| |||| | |||| ||| ||||||  |  | |||| |||| ||| | ||||||||||||||   |||||||    
T  11612 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaatc 11711  T
Q  112 ttaattgaataataatggatttcgttgtatttnnnnnnnngtcttgattgaataccacaaaatttacttagattttataaaagttttgattaaata 207  Q
    |||||||||||  || ||||| ||||| |||         || |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||    
T  11712 ttaattgaataccaacggattccgttgcattgtaaaaaaagttttgattgaataccataaaatttacttatattttataaaagtcttgattgaata 11807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 723
Target Start/End: Original strand, 1012 - 1079
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaa 723  Q
    ||||||||| |||||||||||||||||||||| || ||||||| |||||| ||||||| |||| ||||    
T  1012 gattgtattgattttgtgggattttaaaagactttatttaaaaaacttttcacaattaggatttttaa 1079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 1700 - 1810
Alignment:
Q  12 ttttaactaaaaagtctcaaacaatctatttcatagatgaattcattaaaatctctctaattttcaatatcaagagacattttataagttcctagaaatc 111  Q
    ||||||||||||||||||| | |||| |||  | | | |||| |||||||||||    | |||| |||| ||| ||||||||||||||||  || |||||    
T  1700 ttttaactaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatc 1799  T
Q  112 ttaattgaata 122  Q
    |||||||||||    
T  1800 ttaattgaata 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 711
Target Start/End: Original strand, 15699 - 15754
Alignment:
Q  656 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaat 711  Q
    ||||||||| ||||| || ||||||||||||| || |||||||||||||| |||||    
T  15699 gattgtattgattttttgagattttaaaagactttatttaaaagacttttcacaat 15754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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