View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-6 (Length: 780)
Name: NF4606-Insertion-6
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-6 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 553 - 780
Target Start/End: Complemental strand, 10102203 - 10101978
Alignment:
| Q |
553 |
aaaataaaataagtttctttaataattaatttatgagtttgtttaaaagatatttcttgtcaataaattgtcaatcacagttctcacttcccattcatcc |
652 |
Q |
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| T |
10102203 |
aaaaaaaaaaaaatttcgttaataattaatttatgagtttctttaaaagatatttcttgtcaataaattgtcaatcacagctctcactttccattcatcc |
10102104 |
T |
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| Q |
653 |
atccctcctctcttctctgttgttcatcttcactgccaaacactaaactaactattatgttaatgaaataacataagaaacactctcaaaagacatccaa |
752 |
Q |
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| T |
10102103 |
atccctcctctcttctctgttgttcatcttcactgccaaacact--actaactattatgttaatgaaataacataagaaacactctcaaaaaacatccaa |
10102006 |
T |
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| Q |
753 |
atgcttgtaaacattctcacacaagttc |
780 |
Q |
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| T |
10102005 |
atgcttgtaaacattctgacacaagttc |
10101978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 10102385 - 10102277
Alignment:
| Q |
16 |
attggtaaacgaggttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaa |
115 |
Q |
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| T |
10102385 |
attggtaaacaaggttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaa |
10102286 |
T |
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| Q |
116 |
atgagagca |
124 |
Q |
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| T |
10102285 |
atgagagca |
10102277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 10080007 - 10079943
Alignment:
| Q |
539 |
atatcatagattataaaataaaataagtttctttaataattaatttatgagtttgtttaaaagat |
603 |
Q |
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| T |
10080007 |
atatcttaaattataaaataaaataagtttctttaataattaatttaatagtttcttttaaagat |
10079943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 603
Target Start/End: Complemental strand, 10084196 - 10084142
Alignment:
| Q |
549 |
ttataaaataaaataagtttctttaataattaatttatgagtttgtttaaaagat |
603 |
Q |
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| T |
10084196 |
ttataaaataaaataagtttctttaataattaatttaatagtttcttttaaagat |
10084142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 592
Target Start/End: Complemental strand, 10104074 - 10104035
Alignment:
| Q |
553 |
aaaataaaataagtttctttaataattaatttatgagttt |
592 |
Q |
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| T |
10104074 |
aaaataaaataagtttctttaataattaatttataagttt |
10104035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 499
Target Start/End: Complemental strand, 10080091 - 10080049
Alignment:
| Q |
457 |
agccattaaatccaacggttgtaccctctttggcgtgtgaagt |
499 |
Q |
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| T |
10080091 |
agccattaaatccaacggttgtaccctctttagcatgtgaagt |
10080049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 560
Target Start/End: Complemental strand, 10102250 - 10102218
Alignment:
| Q |
528 |
acctttgcttaatatcatagattataaaataaa |
560 |
Q |
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| T |
10102250 |
acctttgcttaatatcatagattataaaataaa |
10102218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 457 - 499
Target Start/End: Complemental strand, 10084287 - 10084245
Alignment:
| Q |
457 |
agccattaaatccaacggttgtaccctctttggcgtgtgaagt |
499 |
Q |
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| T |
10084287 |
agccattaaatccaacgggtgtaccctctttagcatgtgaagt |
10084245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 457 - 499
Target Start/End: Complemental strand, 10096745 - 10096704
Alignment:
| Q |
457 |
agccattaaatccaacggttgtaccctctttggcgtgtgaagt |
499 |
Q |
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| T |
10096745 |
agccattaaatccaacggttgta-cctctttggcatgtgaagt |
10096704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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