View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4606-Insertion-7 (Length: 729)

Name: NF4606-Insertion-7
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4606-Insertion-7
NF4606-Insertion-7
[»] chr1 (11 HSPs)
chr1 (8-673)||(51453870-51454518)
chr1 (11-386)||(51478322-51478697)
chr1 (26-182)||(51474326-51474482)
chr1 (676-729)||(14427349-14427402)
chr1 (676-729)||(44112679-44112732)
chr1 (676-729)||(48119630-48119683)
chr1 (676-720)||(35003296-35003340)
chr1 (676-726)||(35000161-35000211)
chr1 (676-729)||(38113240-38113293)
chr1 (676-729)||(41065155-41065208)
chr1 (676-729)||(45427790-45427843)
[»] chr6 (7 HSPs)
chr6 (11-231)||(18078871-18079091)
chr6 (11-386)||(18076829-18077186)
chr6 (265-383)||(18078747-18078865)
chr6 (674-719)||(27441542-27441587)
chr6 (676-729)||(33253915-33253968)
chr6 (676-720)||(33242405-33242449)
chr6 (674-720)||(24204041-24204087)
[»] chr5 (6 HSPs)
chr5 (49-129)||(43159816-43159896)
chr5 (309-403)||(42431626-42431718)
chr5 (309-386)||(42433365-42433442)
chr5 (676-717)||(30622775-30622816)
chr5 (676-729)||(32473439-32473492)
chr5 (83-136)||(43159692-43159745)
[»] chr8 (2 HSPs)
chr8 (676-729)||(34304790-34304843)
chr8 (676-729)||(35181518-35181571)
[»] chr4 (9 HSPs)
chr4 (676-729)||(32728359-32728412)
chr4 (676-729)||(49229709-49229762)
chr4 (676-729)||(55272421-55272474)
chr4 (674-729)||(3756291-3756346)
chr4 (676-729)||(17619197-17619250)
chr4 (676-720)||(711962-712006)
chr4 (676-720)||(960924-960968)
chr4 (676-720)||(46827760-46827804)
chr4 (680-729)||(48435624-48435673)
[»] chr2 (12 HSPs)
chr2 (676-729)||(18491707-18491760)
chr2 (673-729)||(11825699-11825755)
chr2 (665-729)||(41282019-41282083)
chr2 (676-729)||(966879-966932)
chr2 (676-729)||(43114559-43114612)
chr2 (674-729)||(4299465-4299520)
chr2 (674-729)||(6518514-6518568)
chr2 (676-719)||(16803970-16804013)
chr2 (676-719)||(16843252-16843295)
chr2 (676-729)||(12415505-12415558)
chr2 (676-729)||(12427565-12427618)
chr2 (680-729)||(34895786-34895835)
[»] scaffold0003 (1 HSPs)
scaffold0003 (674-719)||(45774-45819)
[»] chr3 (6 HSPs)
chr3 (676-729)||(9434126-9434179)
chr3 (676-729)||(10457937-10457990)
chr3 (676-720)||(4190319-4190363)
chr3 (676-729)||(34791831-34791884)
chr3 (676-729)||(51757595-51757648)
chr3 (676-729)||(52628022-52628075)
[»] chr7 (6 HSPs)
chr7 (676-720)||(27535285-27535329)
chr7 (676-708)||(33384872-33384904)
chr7 (676-719)||(31408688-31408731)
chr7 (674-720)||(43343678-43343724)
chr7 (674-720)||(44416988-44417034)
chr7 (676-729)||(40236921-40236974)
[»] scaffold0100 (1 HSPs)
scaffold0100 (676-729)||(35501-35554)


Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Complemental strand, 51454518 - 51453870
Alignment:
Q  8 aatgaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgttttt 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454518 aatgaatccctagctgcaatgtcatcaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgttttt 51454419  T
Q  108 ctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454418 ctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccac 51454319  T
Q  208 gtcaccatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51454318 gtcaccatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttcttgatgatcatgatcaggaatgggttcatctgaatcagggagg 51454219  T
Q  308 gtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtttttc 407  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51454218 gtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgccattgaaatttcgaatgcagagaatggagtttttgtttttc 51454119  T
Q  408 agggatttgattaattagtttaacatagaatagaggatgaaaatggcgaggtgaaggaaccctagctatggagcatgcattgcatttgggtttgtttact 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454118 agggatttgattaattagtttaacatagaatagaggatgaaaatggcgaggtgaaggaaccctagctatggagcatgcattgcatttgggtttgtttact 51454019  T
Q  508 tctactgctactgctgaaaatggcgaggtggagaaacctgaacgttgagaatggttgttacttgtattaggcatcgcatcagcgtggtatagtgtaagga 607  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||                ||||    
T  51454018 tctactgctactgctgaaaatggcgaggtggagaaaactgaacgttgagaatgtttgttacttgtattaggcatcgcatc----------------agga 51453935  T
Q  608 gtggggtccataaaaccgattctaaaatagcaataagtcataacttgctcattaaggttttttccg 673  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51453934 gt-gggtccataaaaccgattctaaaatagcaataagtcataacttgctcattaaggttttttccg 51453870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 51478697 - 51478322
Alignment:
Q  11 gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc 110  Q
    |||||| ||||||| |||  | || ||||||| ||||| ||||||||| || ||| | |||||||||||||||  ||||||| |||| |||||||| |||    
T  51478697 gaatccttagctgccatgctatcagcttcaacagaaccatcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgttttcctc 51478598  T
Q  111 gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc 210  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  51478597 gatcaggaacagattcttcagctacttccaccacgtcatcacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagcttgtgccacatc 51478498  T
Q  211 accatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtg 310  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || |||| ||||    
T  51478497 accatcctccaacggtaccatttccgcgccaacattggcagtgggttgtgtttctcgatgatcatgatcaggaatgggttcatctgggtccgggacggtg 51478398  T
Q  311 agtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag 386  Q
    ||| |||||||||||||||||||||| |||||| |||  |||||||||||||| ||||||||||||||||||||||    
T  51478397 agtatgactttgattttcactatatacgtgactatgtcattgttctcttcctcagccattgaaatttcaaatgcag 51478322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 51474482 - 51474326
Alignment:
Q  26 atgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagatt 125  Q
    |||||| || ||||||| |||||||||||||||    ||| | ||||||| | |||||||||||||| ||| | |||||||||||||||||||| | |||    
T  51474482 atgtcatcagcttcaacggaaccttcatcgtccgatgacaacaacaccactgctttggcgccaacatccatagtttgtttttctcgatcaggaacatatt 51474383  T
Q  126 cttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcag 182  Q
    ||||||||||| |  |||| ||||||| |||| | || ||||||||| | |||||||    
T  51474382 cttcagctgctgctgccacatcatcaccttcaccgtcattcaacgacactgtttcag 51474326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 14427349 - 14427402
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcat 14427402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 44112679 - 44112732
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  44112679 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 44112732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 48119630 - 48119683
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 48119683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Original strand, 35003296 - 35003340
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  35003296 aaaatgttacatgaacaccctttaatcatacaccctattgtacac 35003340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 726
Target Start/End: Complemental strand, 35000211 - 35000161
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatg 726  Q
    ||||||||||||||||| | ||||||||||||| |||||||| || |||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatg 35000161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 38113293 - 38113240
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||    
T  38113293 aaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcat 38113240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 41065155 - 41065208
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||  |||||||    
T  41065155 aaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcat 41065208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 45427843 - 45427790
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||| | | ||||||||||||| |||||||||||  |||||||    
T  45427843 aaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcat 45427790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 18079091 - 18078871
Alignment:
Q  11 gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc 110  Q
    |||||| ||||||| |||||| || ||||||| ||||||||||||||| || ||| |  || |||| ||||||||||||  | ||| |||||||||||||    
T  18079091 gaatccttagctgccatgtcatcagcttcaacagaaccttcatcgtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgtttttctc 18078992  T
Q  111 gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc 210  Q
    ||||||||  | |||||||| ||||| |  ||||||| |||| |||| | || |||||||| ||| ||| ||| |||||||||| |||| ||||||||||    
T  18078991 gatcaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtgccacgtc 18078892  T
Q  211 accatcctccaacggtaccgt 231  Q
    | || ||||||||||||||||    
T  18078891 atcaccctccaacggtaccgt 18078871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 18077186 - 18076829
Alignment:
Q  11 gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc 110  Q
    |||||| ||||| | |||||| || ||||||| ||||||||||||||   | ||| |  |||||| || ||||||||||||| ||| | |||||||||||    
T  18077186 gaatccttagcttccatgtcatcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctc 18077087  T
Q  111 gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc 210  Q
    || |||||| ||||||  |||||||| || |||| ||||||| |||| | || ||||||||||| | |||||  | |||| ||| ||| ||||||| |||    
T  18077086 gaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacgacgctgattcagaactaacatcgatagcatgtgccaagtc 18076987  T
Q  211 accatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtg 310  Q
    | |  ||||  ||||||||||||  |||||||||||   |||||| |||||||||||   |||||  ||     |||||        ||  ||||  |||    
T  18076986 atctccctctgacggtaccgtttgggcgccaacattcaaagtaggctgtgtttctcg---atcatcctc-----tgggt--------at--gggaccgtg 18076905  T
Q  311 agtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag 386  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||| ||||||| ||||||||    
T  18076904 agtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccatagaaatttgaaatgcag 18076829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 18078865 - 18078747
Alignment:
Q  265 tcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctcc 364  Q
    ||||||||||||||||||||||||||| |||   || ||||  |||||| ||||||||||||| ||| ||||||||||| ||  | ||||||| ||||||    
T  18078865 tcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttactgtatatgtgactatgacgctgttctcgtcctcc 18078766  T
Q  365 gccattgaaatttcaaatg 383  Q
    |||||||||||||||||||    
T  18078765 gccattgaaatttcaaatg 18078747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 719
Target Start/End: Original strand, 27441542 - 27441587
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtaca 719  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    
T  27441542 gaaaaatgttacatgaacaccctttaatcatacaccctattgtaca 27441587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 33253915 - 33253968
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  |||||||    
T  33253915 aaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcat 33253968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Original strand, 33242405 - 33242449
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacac 33242449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 720
Target Start/End: Complemental strand, 24204087 - 24204041
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacac 24204041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 43159896 - 43159816
Alignment:
Q  49 ttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttc 129  Q
    |||||||||| |||||||| || ||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  43159896 ttcatcgtccgtcaacagcaactccaccgtattggcgccaacattcatagcttgtttttcttgatcaggaacagattcttc 43159816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 42431626 - 42431718
Alignment:
Q  309 tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtt 403  Q
    |||||||||||||||||||||| ||||||||| |  ||| |||||||||||||||||||||||||||||| |||| || |||  |||||||||||    
T  42431626 tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagggaa--gagtttttgtt 42431718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 42433442 - 42433365
Alignment:
Q  309 tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag 386  Q
    |||| ||||||||||||| ||| | |||||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  42433442 tgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatgcag 42433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 717
Target Start/End: Complemental strand, 30622816 - 30622775
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgta 717  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  30622816 aaaatgttacatgaacatcctttaatcatacaccctattgta 30622775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 32473492 - 32473439
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  |||||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcat 32473439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 43159745 - 43159692
Alignment:
Q  83 gcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgct 136  Q
    |||||||||||||| |||||||| ||| ||||||||| ||| ||||| ||||||    
T  43159745 gcgccaacattcatagcttgtttatcttgatcaggaacagactcttctgctgct 43159692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 34304790 - 34304843
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  34304790 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcat 34304843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 35181518 - 35181571
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 35181571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 32728359 - 32728412
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  32728359 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcat 32728412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 49229762 - 49229709
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||    
T  49229762 aaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcat 49229709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 55272474 - 55272421
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  55272474 aaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcat 55272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 674 - 729
Target Start/End: Complemental strand, 3756346 - 3756291
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  3756346 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 3756291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 17619250 - 17619197
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  17619250 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcat 17619197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Original strand, 711962 - 712006
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacac 712006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Complemental strand, 960968 - 960924
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  960968 aaaatgttacatgaacaccctttaatcatacactctattgtacac 960924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Complemental strand, 46827804 - 46827760
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  46827804 aaaatgttacatgaacaccctttaatcatacactctattgtacac 46827760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 729
Target Start/End: Complemental strand, 48435673 - 48435624
Alignment:
Q  680 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcat 48435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 18491707 - 18491760
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcat 18491760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 673 - 729
Target Start/End: Complemental strand, 11825755 - 11825699
Alignment:
Q  673 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  11825755 ggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 11825699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 729
Target Start/End: Complemental strand, 41282083 - 41282019
Alignment:
Q  665 ttttttccggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  41282083 ttttttcttgaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 41282019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 966932 - 966879
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 966879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 43114559 - 43114612
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcat 43114612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 729
Target Start/End: Complemental strand, 4299520 - 4299465
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||    
T  4299520 gaaaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcat 4299465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 729
Target Start/End: Complemental strand, 6518568 - 6518514
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  6518568 gaaaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcat 6518514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 719
Target Start/End: Original strand, 16803970 - 16804013
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtaca 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||    
T  16803970 aaaatgttacatgaacaccctttaatcatacaccctattgtaca 16804013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 719
Target Start/End: Original strand, 16843252 - 16843295
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtaca 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||    
T  16843252 aaaatgttacatgaacaccctttaatcatacaccctattgtaca 16843295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 12415558 - 12415505
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  |||||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcat 12415505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 12427618 - 12427565
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  |||||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcat 12427565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 729
Target Start/End: Complemental strand, 34895835 - 34895786
Alignment:
Q  680 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||    
T  34895835 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcat 34895786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 719
Target Start/End: Complemental strand, 45819 - 45774
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtaca 719  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    
T  45819 gaaaaatgttacatgaacaccctttaatcatacaccctattgtaca 45774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 9434126 - 9434179
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcat 9434179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 10457990 - 10457937
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||    
T  10457990 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcat 10457937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Complemental strand, 4190363 - 4190319
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacac 4190319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 34791831 - 34791884
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | |||||||||||||  ||||||| || ||||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcat 34791884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 51757595 - 51757648
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||| |||||| |||| | ||||||||||||| ||||||||||| ||||||||    
T  51757595 aaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcat 51757648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 52628075 - 52628022
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    |||||||||| |||||| | ||||||||||||  ||||||||||| ||||||||    
T  52628075 aaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcat 52628022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 720
Target Start/End: Complemental strand, 27535329 - 27535285
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  27535329 aaaatgttacatgaacaccctttaatcatacactctattgtacac 27535285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 708
Target Start/End: Original strand, 33384872 - 33384904
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacac 708  Q
    |||||||||||||||||||||||||||||||||    
T  33384872 aaaatgttacatgaacatcatttaatcatacac 33384904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 719
Target Start/End: Complemental strand, 31408731 - 31408688
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtaca 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||    
T  31408731 aaaatgttacatgaacaccctttaatcatacactctattgtaca 31408688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 720
Target Start/End: Complemental strand, 43343724 - 43343678
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||    
T  43343724 gaaaaatgttacatgaacatcatttatttctacaccctattgtacac 43343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 720
Target Start/End: Complemental strand, 44417034 - 44416988
Alignment:
Q  674 gaaaaatgttacatgaacatcatttaatcatacacactattgtacac 720  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacac 44416988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Original strand, 40236921 - 40236974
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    ||||||||||||||||| | ||||||||||||  |||||||||||  |||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcat 40236974  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 35554 - 35501
Alignment:
Q  676 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcat 729  Q
    |||||||||||| |||| |||||||||||||||  ||||||||||  |||||||    
T  35554 aaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcat 35501  T

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