View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-8 (Length: 659)
Name: NF4606-Insertion-8
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-8 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 121 - 659
Target Start/End: Original strand, 47075054 - 47075592
Alignment:
| Q |
121 |
gccatatgaggaacagctgaaacagttacttttatgcataaccggaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccac |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075054 |
gccacatgaggaacagctgaaacagttacttttatgcataaccggaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccac |
47075153 |
T |
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| Q |
221 |
acccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatgacttcccaagga |
320 |
Q |
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| T |
47075154 |
acccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatgacttcccaagga |
47075253 |
T |
|
| Q |
321 |
acaagattattcacctctcccgcaacaaggcacttataagcccaaccagagagaataatctcctcaggttccaacacattaacatctaggtttcttctgc |
420 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075254 |
acaagattattcacctgtcccgcaacaaggcacttataagcccaaccagagagaagaatctcctcaggttccaacacattaacatctaggtttcttctgc |
47075353 |
T |
|
| Q |
421 |
aacataaaatttcaaacaacattattccatagctataaacatcttccttaagtgatattggcacgttcatgttccattctggagccatgtagccccgtgt |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075354 |
aacataaaatttcaaacaacattattccatagctataaacatctgccttaagtgatattggcacgttcatgttccattctggagccatgtagccccgtgt |
47075453 |
T |
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| Q |
521 |
ccctctaacaaccgtgaaagttctggtttggtccggcattaaaagttttgcaagaccaaaatcagatatcttggcagtccaaaactcatccatcaaaatg |
620 |
Q |
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| T |
47075454 |
ccctctaacaaccgtgaaagttctggtttggtccggcattaaaagttttgcaagaccaaaatcggatatcttggcagtccaaaactcatccatcaaaatg |
47075553 |
T |
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| Q |
621 |
ttttgaggctttatgtcacaatgaatgattggtgcctca |
659 |
Q |
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| T |
47075554 |
ttttgaggctttatgtcacaatgaatgattggtgcctca |
47075592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 165 - 652
Target Start/End: Complemental strand, 47069232 - 47068745
Alignment:
| Q |
165 |
gaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccacacccttcatcgttggcctgagaaaagggtcatcttggatacacc |
264 |
Q |
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|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47069232 |
gaatttggacacggaggaattgctatatcagtaatcccttctaacatcaacaccacacccttcattgttggcctgagaaaagggtcatcttggatacacc |
47069133 |
T |
|
| Q |
265 |
aaagtgccactttaaccatattttccatgacattattatcaatgacttcccaaggaacaagattattcacctctcccgcaacaaggcacttataagccca |
364 |
Q |
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| T |
47069132 |
aaagtgccaccttaaccatattttccatgacatttttatcaatggcttctgaaggaacaagcttgtttacgtctcctgcaataaagcacttataagtcca |
47069033 |
T |
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| Q |
365 |
accagagagaataatctcctcaggttccaacacattaacatctaggtttcttctgcaacataaaatttcaaacaacattattccatagctataaacatct |
464 |
Q |
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| T |
47069032 |
accagcaagaagaatctcctcaggttccaacacattaacatctaggtttcttctgcaacataagatttccaacagcactattccatagctataaacatct |
47068933 |
T |
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| Q |
465 |
tccttaagtgatattggcacgttcatgttccattctggagccatgtagccccgtgtccctctaacaaccgtgaaagttctggtttggtccggcattaaaa |
564 |
Q |
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|| | |||||||| ||||||| ||||||| || || |||||||| || | ||||||||| || | |||||| |||||||||||||| |||||||||| |
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| T |
47068932 |
gttttcactgatattgccacgttcttgttccactccggggccatgtaccctcttgtccctctgaccatcgtgaatgttctggtttggtctggcattaaaa |
47068833 |
T |
|
| Q |
565 |
gttttgcaagaccaaaatcagatatcttggcagtccaaaactcatccatcaaaatgttttgaggctttatgtcacaatgaatgattgg |
652 |
Q |
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| T |
47068832 |
gttttgcaagcccaaaatcagatatcttggcagtccaaaacttatccatcaaaatgttttgaggctttaagtcgcaatgaatgattgg |
47068745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 210 - 421
Target Start/End: Original strand, 47086723 - 47086931
Alignment:
| Q |
210 |
atcaacaccacacccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatga |
309 |
Q |
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| T |
47086723 |
atcaacaacacacccttcattgttggcctgagaaaaggttc---ttggacacatcaaagggtcaccttaaccatattttccatgacattattatcaataa |
47086819 |
T |
|
| Q |
310 |
cttcccaaggaacaagattattcacctctcccgcaacaaggcacttataagcccaaccagagagaataatctcctcaggttccaacacattaacatctag |
409 |
Q |
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|||||||||| ||||| ||||| | || || ||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47086820 |
cttcccaagggacaagcttatttagcttgcctgcaacaatgtaaatataagcccaaccagagagaagaatctcctcaggttccaacacattaacatctag |
47086919 |
T |
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| Q |
410 |
gtttcttctgca |
421 |
Q |
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|||||||||||| |
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| T |
47086920 |
gtttcttctgca |
47086931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 47074940 - 47074989
Alignment:
| Q |
7 |
aataactacattcattttttgcctgcttccttattttagacacaacagag |
56 |
Q |
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| T |
47074940 |
aataactacattcattttttgcctgcttccttattttagacacagcagag |
47074989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 47086556 - 47086596
Alignment:
| Q |
207 |
aacatcaacaccacacccttcatcgttggcctgagaaaagg |
247 |
Q |
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| T |
47086556 |
aacatcaacaacacacccttcattgttggcctgagaaaagg |
47086596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 649
Target Start/End: Complemental strand, 3035814 - 3035783
Alignment:
| Q |
618 |
atgttttgaggctttatgtcacaatgaatgat |
649 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3035814 |
atgttttgaggctttatgtcacaatgaatgat |
3035783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 621 - 649
Target Start/End: Complemental strand, 4107456 - 4107428
Alignment:
| Q |
621 |
ttttgaggctttatgtcacaatgaatgat |
649 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4107456 |
ttttgaggctttatgtcacaatgaatgat |
4107428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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