View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-9 (Length: 613)
Name: NF4606-Insertion-9
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 7 - 613
Target Start/End: Original strand, 7902075 - 7902681
Alignment:
| Q |
7 |
acaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccaggaccactatt |
106 |
Q |
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| T |
7902075 |
acaatgatgtggaagagattgaaaagcaagggaacaaattggggttgccaccaaatatgtcagatgcacatacgatcaatggaaaaccaggaccactatt |
7902174 |
T |
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| Q |
107 |
tccttgttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtaca |
206 |
Q |
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| T |
7902175 |
tccttgttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtaca |
7902274 |
T |
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| Q |
207 |
aatacaaaatatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtaga |
306 |
Q |
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| T |
7902275 |
aatacaaaatatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtaga |
7902374 |
T |
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| Q |
307 |
acaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgat |
406 |
Q |
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| T |
7902375 |
acaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgat |
7902474 |
T |
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| Q |
407 |
gctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtact |
506 |
Q |
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| T |
7902475 |
gctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtact |
7902574 |
T |
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| Q |
507 |
ttgtggccaccaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaagacatcccaaacactgtccaacc |
606 |
Q |
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| T |
7902575 |
ttgtggccaccaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaagacatcccaaacactgtccaacc |
7902674 |
T |
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| Q |
607 |
catcctt |
613 |
Q |
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| T |
7902675 |
catcctt |
7902681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 277 - 474
Target Start/End: Original strand, 7892072 - 7892269
Alignment:
| Q |
277 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
376 |
Q |
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| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
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| Q |
377 |
ggtcacaacatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttct |
474 |
Q |
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| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatgcagtttacacaaaaccattcacaacacaatccattctaattggtcctggtcaaaccacaaatgttct |
7892269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 7891756 - 7891880
Alignment:
| Q |
6 |
cacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccaggaccactat |
105 |
Q |
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| T |
7891756 |
cacaaagatgtggaagagatagtaaaccaagggaaccaaatggggttgccaccaaatatgtcggatgcacatacgatcaatgggaagccaggaccactct |
7891855 |
T |
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| Q |
106 |
ttccttgttctgagaagcgtaagaa |
130 |
Q |
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| T |
7891856 |
ttccttgttccgagaaacgtaagaa |
7891880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 31214054 - 31214165
Alignment:
| Q |
7 |
acaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccaggaccactatt |
106 |
Q |
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| T |
31214054 |
acaatgatgtggaagagattgaaaatcaaggaaacaatatggggttgtcaccaaatatgtcagatgcacatacgatcaatggaaaaccaggaccgctatt |
31214153 |
T |
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| Q |
107 |
tccttgttctga |
118 |
Q |
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| T |
31214154 |
tccttgttctga |
31214165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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