View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606_low_1 (Length: 547)
Name: NF4606_low_1
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 216 - 540
Target Start/End: Original strand, 1590267 - 1590592
Alignment:
| Q |
216 |
atgtcattgtaccatttgttgtctaagtttatgtcattcaacca-tatttatattagcctaattgttattgtttttgaggaaaatgtgaggggggaggag |
314 |
Q |
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| T |
1590267 |
atgtcattgtaccatttgttgtctaagtttatgtcattcatctaatatttatattagcctaattgttattgtttatgaggaaaatgtgagggcggaggag |
1590366 |
T |
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| Q |
315 |
aatagagggtgagaaacaatgaagacatgttgcaaagaagatccagttttgctactttgcaacttcagataaaatatcccaaactttttaggatgctctc |
414 |
Q |
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| T |
1590367 |
aatagagggtgagaaacaatgaagacatgttgcaaagaagatccagttttgcgactttgcaacttcagataaaatatcccagactttttaggatgctctc |
1590466 |
T |
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| Q |
415 |
aaataagtctcagatattatgaatatatttcaaaaatatctttgaatctgtaacaacaatgtttatcagtgcatatacaactaaccacttacactatcaa |
514 |
Q |
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| T |
1590467 |
aaataagtctcagatattatgaatatatttcaaaaatatctttgaatctgtaacaacaatgtttatcagtgcatatacaactaaccacttacagtatcaa |
1590566 |
T |
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| Q |
515 |
tttagtttctaacatcgatatcactt |
540 |
Q |
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| T |
1590567 |
tttagtttctaacatcgataacactt |
1590592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 258 - 396
Target Start/End: Complemental strand, 1589129 - 1588989
Alignment:
| Q |
258 |
catatttatatt-agcctaattgttattgtttttgaggaaaatgtgagggggg-aggagaatagagggtgagaaacaatgaagacatgttgcaaagaaga |
355 |
Q |
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| T |
1589129 |
catatttatatttagcctaattgttaatgtttgtgagaaaaatgtgagggggggaggagaatagagggtgagaaacaatgaagacatgtttcaaagaaga |
1589030 |
T |
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| Q |
356 |
tccagttttgctactttgcaacttcagataaaatatcccaa |
396 |
Q |
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| T |
1589029 |
cacagttttgggactttgcaacttcagataaactattccaa |
1588989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 19267604 - 19267820
Alignment:
| Q |
18 |
ttacaccggtgcaacttgctccaaatgaagaagaagatccataagatattgatcccatat--ccaaaagacgcatgcttttcagcaagtcctctttctct |
115 |
Q |
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| T |
19267604 |
ttacaccggtgcaacttgctccaa-tgaagaagaagatccataagatattgatcccatatatccaaaagacacatgcttttcagcaagtcctctttctct |
19267702 |
T |
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| Q |
116 |
tgttttattttgatgatagttaatgctttaaattcaccatcttcttctgttgttccatcaacagaatctattcctgaacctaccccccaaaaaatcaacc |
215 |
Q |
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| T |
19267703 |
tgttttattttgatgatagtga-tgttttaaattcaccatcttcttctgttgttccatcaacagaatctattcctgaaccta-cccttaaaaaatcaacc |
19267800 |
T |
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| Q |
216 |
atgtcattgtaccatttgtt |
235 |
Q |
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| T |
19267801 |
atgtcattgatccatttgtt |
19267820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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