View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4606_low_2 (Length: 432)

Name: NF4606_low_2
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4606_low_2
NF4606_low_2
[»] chr6 (10 HSPs)
chr6 (90-416)||(3711714-3712039)
chr6 (5-74)||(34396131-34396200)
chr6 (6-58)||(31741457-31741509)
chr6 (19-69)||(7720486-7720536)
chr6 (9-59)||(15126294-15126344)
chr6 (8-59)||(3230957-3231008)
chr6 (19-74)||(9438364-9438419)
chr6 (2-56)||(5288341-5288395)
chr6 (9-74)||(22389728-22389793)
chr6 (18-74)||(6530182-6530238)
[»] chr5 (10 HSPs)
chr5 (90-416)||(27878882-27879207)
chr5 (2-59)||(9408943-9409000)
chr5 (9-74)||(13754058-13754123)
chr5 (9-69)||(33729830-33729890)
chr5 (6-49)||(7645105-7645148)
chr5 (4-69)||(6561945-6562010)
chr5 (5-74)||(29096286-29096355)
chr5 (9-69)||(9963468-9963528)
chr5 (22-74)||(15978655-15978707)
chr5 (19-59)||(30403812-30403852)
[»] chr4 (14 HSPs)
chr4 (20-74)||(49280647-49280701)
chr4 (2-56)||(32885733-32885787)
chr4 (2-56)||(35451117-35451171)
chr4 (2-59)||(12856229-12856286)
chr4 (19-58)||(22478734-22478773)
chr4 (19-74)||(30152176-30152231)
chr4 (9-59)||(15638738-15638788)
chr4 (19-69)||(28221290-28221340)
chr4 (9-71)||(39992887-39992949)
chr4 (5-74)||(17859826-17859895)
chr4 (2-47)||(51077912-51077957)
chr4 (18-74)||(9084820-9084876)
chr4 (9-69)||(11039919-11039979)
chr4 (5-69)||(35332971-35333035)
[»] chr8 (12 HSPs)
chr8 (8-74)||(24074557-24074623)
chr8 (19-74)||(15042343-15042398)
chr8 (5-56)||(36359714-36359765)
chr8 (2-56)||(13702348-13702402)
chr8 (2-56)||(26703886-26703940)
chr8 (2-56)||(33570425-33570479)
chr8 (2-56)||(43468701-43468755)
chr8 (5-46)||(14352820-14352861)
chr8 (4-74)||(40249856-40249928)
chr8 (21-74)||(43874955-43875008)
chr8 (20-56)||(37154577-37154613)
chr8 (9-73)||(39484349-39484413)
[»] chr2 (8 HSPs)
chr2 (2-56)||(2114431-2114485)
chr2 (2-56)||(44721700-44721754)
chr2 (9-74)||(18386790-18386855)
chr2 (9-74)||(34018048-34018113)
chr2 (5-74)||(41195920-41195989)
chr2 (9-74)||(22538591-22538656)
chr2 (18-74)||(14483635-14483691)
chr2 (9-45)||(32943391-32943427)
[»] chr1 (7 HSPs)
chr1 (8-58)||(6014512-6014562)
chr1 (19-74)||(19793588-19793643)
chr1 (19-74)||(35593825-35593880)
chr1 (19-74)||(37733817-37733872)
chr1 (19-74)||(46116152-46116207)
chr1 (9-74)||(47939177-47939242)
chr1 (6-74)||(48110578-48110646)
[»] chr3 (15 HSPs)
chr3 (3-56)||(35477777-35477830)
chr3 (5-58)||(45713528-45713581)
chr3 (2-59)||(49019228-49019285)
chr3 (3-58)||(4072727-4072782)
chr3 (5-56)||(14271923-14271974)
chr3 (31-74)||(30157076-30157119)
chr3 (2-48)||(9167275-9167321)
chr3 (2-56)||(13616070-13616124)
chr3 (6-56)||(48173335-48173385)
chr3 (2-56)||(54983701-54983755)
chr3 (10-55)||(8959502-8959547)
chr3 (19-68)||(24537889-24537938)
chr3 (6-59)||(55195854-55195907)
chr3 (7-58)||(7923808-7923860)
chr3 (2-74)||(43566774-43566846)
[»] chr7 (6 HSPs)
chr7 (22-74)||(25086928-25086980)
chr7 (19-74)||(29658250-29658305)
chr7 (9-56)||(35368448-35368495)
chr7 (19-56)||(45198094-45198131)
chr7 (19-59)||(8214172-8214212)
chr7 (19-59)||(44843753-44843793)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 90 - 416
Target Start/End: Complemental strand, 3712039 - 3711714
Alignment:
Q  90 gggatggatggctgctattttgtcgtatttccatgaaaac--tttgtccacnnnnnnngtaaattaacaacataattaagccactggtatatgaaaatcg 187  Q
    ||||||||||||||||||||||| ||||||||||| | ||  |||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  3712039 gggatggatggctgctattttgttgtatttccatgtataccatttgtccacttttt--gtaaattaacaacataattaagccactggtatatgaaaatcg 3711942  T
Q  188 tctctgagaaagaaaaaataaaagtatgaattgcaacaaaaagtttaaacaagactaatacaataatggtaannnnnnnnnnacgcacaagtacaatttt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||          ||||||||||||||||||    
T  3711941 tctctgagaaagaaaaaataaaagtatgaattgcaacaaaaagtttaaataagactaacacaataatggtaattttgtttt-acgcacaagtacaatttt 3711843  T
Q  288 tgatgaaaaataatagtatattgtagtatttatatgacgatgaataaactgctaagaaaaacatgccaaatatctttcccgcaaaatattcttttaaaaa 387  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3711842 tgatgaaaaataatagtatattgtagtatttatgtgacgatgaataaactgctaagaaaaacatgccaaatatctttccctcaaaatatccttttaaaaa 3711743  T
Q  388 acattgtcacaaacacgtaacataattag 416  Q
    |||||||||||||||||||||||||||||    
T  3711742 acattgtcacaaacacgtaacataattag 3711714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 34396131 - 34396200
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||||| | ||||||||  ||||||||||||||||||||| ||||||||| |||| |||| ||||    
T  34396131 cggagttcgaactccggacaccctatttattcaccttataaggtgaattctaaccaatagactacctgac 34396200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 31741509 - 31741457
Alignment:
Q  6 ggagttcgaatttcggacacctcatttattcaccttataaggtggattctaac 58  Q
    ||||||||||||||||||| | ||||||||||||||||||| || ||||||||    
T  31741509 ggagttcgaatttcggacatcccatttattcaccttataagatgaattctaac 31741457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 7720536 - 7720486
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    |||||||| || |||||||||||||||||||||||||| ||| ||||||||    
T  7720536 cggacaccccacttattcaccttataaggtggattctagccgctaggctac 7720486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 15126294 - 15126344
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    ||||||| | |||||||| |||||||||||||||||||||| |||||||||    
T  15126294 gttcgaactccggacaccccatttattcaccttataaggtgaattctaacc 15126344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 3231008 - 3230957
Alignment:
Q  8 agttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    |||||||||||| |||||| ||||||||||||||| |||||| |||| ||||    
T  3231008 agttcgaatttcagacaccccatttattcaccttaaaaggtgaattccaacc 3230957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 9438364 - 9438419
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || | ||||||||||||||||| |||||||||  |||||||||||||    
T  9438364 cggacaccccactcattcaccttataaggtgaattctaaccactaggctacttgac 9438419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 5288395 - 5288341
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| || |||| | ||||||||||| ||||||||||||||||||| ||||||    
T  5288395 ggtcggggtccgaactccggacacctcaattattcaccttataaggtgaattcta 5288341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 22389793 - 22389728
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||  |||||||| || ||||||||||||||||||| |||||| ||| ||| |||| ||||    
T  22389793 gttcgaatcccggacaccccacttattcaccttataaggtgaattctagccgctagactacctgac 22389728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6530238 - 6530182
Alignment:
Q  18 tcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||| || ||||||||||||||||||| |||||| ||  ||| |||||||||    
T  6530238 tcggacaccccacttattcaccttataaggtgaattctagccactagactacttgac 6530182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 90 - 416
Target Start/End: Complemental strand, 27879207 - 27878882
Alignment:
Q  90 gggatggatggctgctattttgtcgtatttccatgaaaac--tttgtccacnnnnnnngtaaattaacaacataattaagccactggtatatgaaaatcg 187  Q
    ||||||||||||||||||||||  ||||||||||| | ||  |||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  27879207 gggatggatggctgctattttgctgtatttccatgtataccctttgtccacttttt--gtaaattaacaacataattaagccactggtatatgaaaatcg 27879110  T
Q  188 tctctgagaaagaaaaaa-taaaagtatgaattgcaacaaaaagtttaaacaagactaatacaataatggtaannnnnnnnnnacgcacaagtacaattt 286  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||          ||| |||||||||||||    
T  27879109 tctctgagaaagaaaaaaataaaagtatgaattgcaacaaaaagtttaaacaagactaacacaataatggtaattttttttt-acgaacaagtacaattt 27879011  T
Q  287 ttgatgaaaaataatagtatattgtagtatttatatgacgatgaataaactgctaagaaaaacatgccaaatatctttcccgcaaaatattcttttaaaa 386  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  27879010 ttgatgaaaa-taatagtatattgtagtatttatgtgatgatgaataaactgctaagaaaaacatgccaaatatctttccctcaaaatatccttttaaaa 27878912  T
Q  387 aacattgtcacaaacacgtaacataattag 416  Q
    ||||||||||||||||||||||||||||||    
T  27878911 aacattgtcacaaacacgtaacataattag 27878882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 9409000 - 9408943
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    ||||||||||||||   ||||||||||||||||||| |||||||| || |||||||||    
T  9409000 ggtcggagttcgaaccccggacacctcatttattcaacttataagatgaattctaacc 9408943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 13754058 - 13754123
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||  ||||||||| |||||||||| ||||||||||| |||||||| | |||||||| ||||    
T  13754058 gttcgaacgtcggacaccccatttattcatcttataaggtgaattctaactgctaggctacctgac 13754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 33729830 - 33729890
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    |||||||| || |||||| || ||||||||||||||||||| |||||||||  ||||||||    
T  33729830 gttcgaatctcagacaccccacttattcaccttataaggtgaattctaaccactaggctac 33729890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 7645148 - 7645105
Alignment:
Q  6 ggagttcgaatttcggacacctcatttattcaccttataaggtg 49  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||    
T  7645148 ggagttcaaattttggacacctcacttattcaccttataaggtg 7645105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6561945 - 6562010
Alignment:
Q  4 tcggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    |||||||||||| | || ||||| ||  |||||||||||||||||| |||||||||  ||||||||    
T  6561945 tcggagttcgaactccgaacaccccacatattcaccttataaggtgaattctaaccactaggctac 6562010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 29096355 - 29096286
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||||||   |||||||| || ||||||||||||||||||| |||||| ||  |||||||| ||||    
T  29096355 cggagttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactaggctacctgac 29096286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 9963468 - 9963528
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    ||||||| ||||||| || || ||||||||||||||| ||| |||||||||  ||||||||    
T  9963468 gttcgaacttcggaccccccacttattcaccttataaagtgaattctaaccactaggctac 9963528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 15978707 - 15978655
Alignment:
Q  22 acacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||| || ||||||||||||||||||| ||| |||||  |||||||||||||    
T  15978707 acaccccacttattcaccttataaggtgaattttaaccactaggctacttgac 15978655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 30403812 - 30403852
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaacc 59  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  30403812 cggacaccccacttattcaccttataaggtgaattctaacc 30403852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 49280701 - 49280647
Alignment:
Q  20 ggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||||| ||||||||||||||||||| |||||||||  |||||||||||||    
T  49280701 ggacacctcacttattcaccttataaggtgaattctaaccactaggctacttgac 49280647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 32885733 - 32885787
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||| ||||||    
T  32885733 ggtcggagttcgaacctcggacaccccacttattcaccttataaggtgaattcta 32885787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 35451171 - 35451117
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||||||||||| | ||||||||||| |||||||||||||||| || ||||||    
T  35451171 ggtcggagttcgaactacggacacctcacttattcaccttataagatgaattcta 35451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 12856229 - 12856286
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    ||||||||||||||   |||||||| || ||||||||||||||||||| |||||||||    
T  12856229 ggtcggagttcgaaccccggacaccccacttattcaccttataaggtgaattctaacc 12856286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 22478773 - 22478734
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaac 58  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  22478773 cggacaccccatttattcaccttataaggtgaattctaac 22478734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 30152176 - 30152231
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||| || ||||||||| ||||    
T  30152176 cggacaccccacttattcaccttataaggtgaattctagccaataggctacctgac 30152231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 15638738 - 15638788
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    ||||||||| ||||||||  ||||||||| ||||||||||| |||||||||    
T  15638738 gttcgaattccggacaccctatttattcatcttataaggtgaattctaacc 15638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28221340 - 28221290
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    |||||||| || ||||||||||||||||||| |||||||||  ||||||||    
T  28221340 cggacaccccacttattcaccttataaggtgaattctaaccactaggctac 28221290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 39992887 - 39992949
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctactt 71  Q
    |||||||||  ||||||| || ||||||||||||||||||| |||||| ||  ||||||||||    
T  39992887 gttcgaattctggacaccccacttattcaccttataaggtgaattctagccactaggctactt 39992949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 17859826 - 17859895
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||||||   || |||||||| ||||||||||||||||||| |||||| ||  |||||||| ||||    
T  17859826 cggagttcgaaccccgaacacctcacttattcaccttataaggtgaattctagccactaggctacctgac 17859895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 51077912 - 51077957
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataagg 47  Q
    ||||||||||||||| ||| ||||| || |||||||||||||||||    
T  51077912 ggtcggagttcgaatctcgaacaccccacttattcaccttataagg 51077957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 9084820 - 9084876
Alignment:
Q  18 tcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||| || ||||||| ||||||||||  ||||||||  ||||||||||||||    
T  9084820 tcggacaccccacttattcatcttataaggtaaattctaacatataggctacttgac 9084876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 11039979 - 11039919
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    ||||||||  |||| ||| || ||||||||||||||||||| |||||||||  ||||||||    
T  11039979 gttcgaatcccggagaccgcacttattcaccttataaggtgaattctaaccattaggctac 11039919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35333035 - 35332971
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctac 69  Q
    ||||||||||| | || ||||| ||||||||||||||||||| || ||| |||||  ||||||||    
T  35333035 cggagttcgaactccgaacaccccatttattcaccttataagatgcattttaaccactaggctac 35332971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 24074557 - 24074623
Alignment:
Q  8 agttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||  |||||||||||| ||||||||||||||||||| |||||| ||  |||||||| ||||    
T  24074557 agttcgaacctcggacacctcacttattcaccttataaggtgaattctagccactaggctacctgac 24074623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 15042398 - 15042343
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||||||  || ||||||||||    
T  15042398 cggacaccccacttattcaccttataaggtgaattctaaccactacgctacttgac 15042343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 36359765 - 36359714
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||||||||  |||||||| || ||||||||||||||||||| ||||||    
T  36359765 cggagttcgaatcccggacaccccacttattcaccttataaggtgaattcta 36359714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 13702402 - 13702348
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| |||||||  || ||||||||| ||||||||||||||||||| ||||||    
T  13702402 ggtcggggttcgaacctcagacacctcacttattcaccttataaggtgaattcta 13702348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 26703940 - 26703886
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| ||||||||  || |||||||| ||||||||||||||||||| ||||||    
T  26703940 ggtcggggttcgaatcccgaacacctcacttattcaccttataaggtgaattcta 26703886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 33570479 - 33570425
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| |||||||  ||||||||| || ||||||||||||||||||| ||||||    
T  33570479 ggtcggggttcgaacctcggacaccccacttattcaccttataaggtgaattcta 33570425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 43468755 - 43468701
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| ||||||| | |||||||| || ||||||||||||||||||| ||||||    
T  43468755 ggtcggggttcgaactccggacaccccacttattcaccttataaggtgaattcta 43468701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 14352861 - 14352820
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataag 46  Q
    |||||||||||  || ||||||||||||||||||||||||||    
T  14352861 cggagttcgaacctcagacacctcatttattcaccttataag 14352820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 40249928 - 40249856
Alignment:
Q  4 tcggagttcgaatttcggacacctc--atttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||||||| | ||||||||||  | |||||||||||||||| || |||||||||  |||||||| ||||    
T  40249928 tcggagttcgaactccggacacctcccacttattcaccttataagatgaattctaaccactaggctacctgac 40249856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 43875008 - 43874955
Alignment:
Q  21 gacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||| || ||||||||||||||||||| ||||||||   |||||||||||||    
T  43875008 gacaccccacttattcaccttataaggtgaattctaacaactaggctacttgac 43874955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 37154577 - 37154613
Alignment:
Q  20 ggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  37154577 ggacaccccatttattcaccttataaggtgaattcta 37154613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 39484413 - 39484349
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttga 73  Q
    ||||||||  |||||||| || ||||||| ||||||||||| |||||||||  || |||||||||    
T  39484413 gttcgaatgccggacaccccacttattcatcttataaggtgaattctaaccactacgctacttga 39484349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 2114485 - 2114431
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| |||||||   ||||||||||||||||||||||||||||||| ||||||    
T  2114485 ggtcggggttcgaaccccggacacctcatttattcaccttataaggtgaattcta 2114431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 44721754 - 44721700
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| |||||||  ||||||||| |||||||||||||||||||||| ||||||    
T  44721754 ggtcggggttcgaacctcggacaccccatttattcaccttataaggtgaattcta 44721700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 18386855 - 18386790
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||| | |||||||| || |||||||||||||||| || |||||| ||| |||||||||||||    
T  18386855 gttcgaactccggacaccccacttattcaccttataagatgaattctagccgctaggctacttgac 18386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 34018113 - 34018048
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||  ||||||||| || ||||||||||||||||||| |||||||||  |||||||| ||||    
T  34018113 gttcgaacctcggacaccccacttattcaccttataaggtgaattctaaccactaggctacctgac 34018048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 41195989 - 41195920
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||||||  || ||||||||||||||||||| |||||||| |||||| ||  |||||||| ||||    
T  41195989 cggagttcgaatcccgaacacctcatttattcacctaataaggtgaattctagccactaggctacctgac 41195920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 22538591 - 22538656
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||  || |||||||| ||||||||||||||||||| |||||| ||  |||||||| ||||    
T  22538591 gttcgaatcccgaacacctcacttattcaccttataaggtgaattctagccactaggctacctgac 22538656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 14483691 - 14483635
Alignment:
Q  18 tcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||| || ||||||| ||||||||||| ||||||||| |||| |||| ||||    
T  14483691 tcggacaccccacttattcatcttataaggtgaattctaaccaatagactacctgac 14483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 32943391 - 32943427
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataa 45  Q
    |||||||||||||||||| || |||||||||||||||    
T  32943391 gttcgaatttcggacaccccacttattcaccttataa 32943427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 6014562 - 6014512
Alignment:
Q  8 agttcgaatttcggacacctcatttattcaccttataaggtggattctaac 58  Q
    |||||||||| |||||||| || ||||||||||||||||||| ||||||||    
T  6014562 agttcgaattccggacaccccacttattcaccttataaggtgaattctaac 6014512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 19793588 - 19793643
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||||||  |||||||| ||||    
T  19793588 cggacaccccacttattcaccttataaggtgaattctaaccactaggctacctgac 19793643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 35593825 - 35593880
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||| ||| |||||||| ||||    
T  35593825 cggacaccccacttattcaccttataaggtgaattctagccgctaggctacctgac 35593880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 37733817 - 37733872
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||||||  |||||||| ||||    
T  37733817 cggacaccccacttattcaccttataaggtgaattctaaccactaggctacctgac 37733872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 46116207 - 46116152
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||||||  |||||||| ||||    
T  46116207 cggacaccccaattattcaccttataaggtgaattctaaccactaggctacctgac 46116152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 47939242 - 47939177
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||| | |||||||| || ||||||||||||| ||||| |||||||||  |||||||| ||||    
T  47939242 gttcgaactccggacaccccacttattcaccttattaggtgaattctaaccactaggctacctgac 47939177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 48110578 - 48110646
Alignment:
Q  6 ggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||||  |||||||||||| ||||||| ||||||||||| | |||| ||  |||||||| ||||    
T  48110578 ggagttcgaacctcggacacctcacttattcatcttataaggtgaaatctagccactaggctacctgac 48110646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 35477777 - 35477830
Alignment:
Q  3 gtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||||||||| | |||||||| || ||||||||||||||||||| ||||||    
T  35477777 gtcggagttcgaactccggacaccccacttattcaccttataaggtgaattcta 35477830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 45713528 - 45713581
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattctaac 58  Q
    ||||||||||| | |||||||| || ||||||||||||||||||| ||||||||    
T  45713528 cggagttcgaactccggacaccccacttattcaccttataaggtgaattctaac 45713581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 49019228 - 49019285
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    |||||| |||||||| || |||||| || ||||||||||||||||||| |||||||||    
T  49019228 ggtcggggttcgaatctcagacaccgcacttattcaccttataaggtgaattctaacc 49019285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 4072782 - 4072727
Alignment:
Q  3 gtcggagttcgaatttcggacacctcatttattcaccttataaggtggattctaac 58  Q
    ||||||||||||| |||||||||| |  ||||||||||||||||||| ||| ||||    
T  4072782 gtcggagttcgaacttcggacacccctcttattcaccttataaggtgaattttaac 4072727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 14271974 - 14271923
Alignment:
Q  5 cggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||||||||   ||||||||||||||||||| ||||||||||| ||||||    
T  14271974 cggagttcgaaccccggacacctcatttattcatcttataaggtgaattcta 14271923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 30157076 - 30157119
Alignment:
Q  31 ttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    ||||||||||||||||||| |||||||||  |||||||||||||    
T  30157076 ttattcaccttataaggtgaattctaaccactaggctacttgac 30157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 9167321 - 9167275
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggt 48  Q
    |||||| ||||||| |||||||||| || ||||||||||||||||||    
T  9167321 ggtcggggttcgaacttcggacaccccagttattcaccttataaggt 9167275  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 13616124 - 13616070
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||||||||||  ||||||||| || ||||||| ||||||||||| ||||||    
T  13616124 ggtcggagttcgaacctcggacaccccacttattcatcttataaggtgaattcta 13616070  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 48173335 - 48173385
Alignment:
Q  6 ggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||||||   ||||||||||| ||||||||||||||||||| ||||||    
T  48173335 ggagttcgaaccccggacacctcacttattcaccttataaggtgaattcta 48173385  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 54983755 - 54983701
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||| |||||||   |||||||| |||||||||||||||||||||| ||||||    
T  54983755 ggtcggggttcgaaccccggacaccccatttattcaccttataaggtgaattcta 54983701  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 8959502 - 8959547
Alignment:
Q  10 ttcgaatttcggacacctcatttattcaccttataaggtggattct 55  Q
    ||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  8959502 ttcgaatctcggacacctcacttattcatcttataaggtgaattct 8959547  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24537889 - 24537938
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggcta 68  Q
    |||||||| || ||||||||||||||||||| |||||| ||| |||||||    
T  24537889 cggacaccccacttattcaccttataaggtgaattctagccgttaggcta 24537938  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 55195907 - 55195854
Alignment:
Q  6 ggagttcgaatttcggacacctcatttattcaccttataaggtggattctaacc 59  Q
    |||||||||| | || |||||||||||||||| ||||||||||| ||| |||||    
T  55195907 ggagttcgaactccgaacacctcatttattcatcttataaggtgaattataacc 55195854  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 7923860 - 7923808
Alignment:
Q  7 gagttcgaatttcggacacctcatttattcacctt-ataaggtggattctaac 58  Q
    |||||||||| ||| |||||||||||||||||||| | |||||| ||||||||    
T  7923860 gagttcgaatctcgcacacctcatttattcaccttaaaaaggtgaattctaac 7923808  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 43566846 - 43566774
Alignment:
Q  2 ggtcggagttcgaatttcggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||| |||||||  || |||||| || ||||||||||||||||||| |||||| ||  |||||||| ||||    
T  43566846 ggtcggggttcgaacctcagacaccccacttattcaccttataaggtgaattctagccactaggctacctgac 43566774  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 25086980 - 25086928
Alignment:
Q  22 acacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| ||||||||||||||||||| |||||||||| || ||||| ||||    
T  25086980 acacctcacttattcaccttataaggtgaattctaaccgctatgctacctgac 25086928  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 29658305 - 29658250
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaaccgataggctacttgac 74  Q
    |||||||| || ||||||||||||||||||| |||||| ||  |||||||||||||    
T  29658305 cggacaccccacttattcaccttataaggtgaattctagccactaggctacttgac 29658250  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 35368448 - 35368495
Alignment:
Q  9 gttcgaatttcggacacctcatttattcaccttataaggtggattcta 56  Q
    ||||||| | |||||||| |||||||||||||||||||||| ||||||    
T  35368448 gttcgaactccggacaccccatttattcaccttataaggtgaattcta 35368495  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 45198131 - 45198094
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattcta 56  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  45198131 cggacaccccatttattcaccttataaggtgaattcta 45198094  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 8214172 - 8214212
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaacc 59  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  8214172 cggacaccccacttattcaccttataaggtgaattctaacc 8214212  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 44843753 - 44843793
Alignment:
Q  19 cggacacctcatttattcaccttataaggtggattctaacc 59  Q
    |||||||| |||||||||| ||||||||||| |||||||||    
T  44843753 cggacaccccatttattcatcttataaggtgaattctaacc 44843793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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