View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606_low_5 (Length: 258)
Name: NF4606_low_5
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 19268071 - 19268252
Alignment:
| Q |
24 |
tcctaggcagccactgtgaatgtt--gagagccaatccttaaatgatatc--gtcacagacgagacgacattaataaaagatagcaaaaaattaaagtta |
119 |
Q |
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| T |
19268071 |
tcctaggcagccactgcaaatgttttgagaaccaatccttaaatgatatctcgtcacagacgagacgacattaataaaagatagcacaaaattaaagtta |
19268170 |
T |
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| Q |
120 |
acagttgaacatcaaaatcatca----taagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt |
197 |
Q |
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| T |
19268171 |
acagttgaacatcaaaaccatcataattaagcagtagaattcaaaccctataaagcaatcaaagcttattttcaagcaattt |
19268252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 19268279 - 19268307
Alignment:
| Q |
224 |
ggaccaacatgatcaaggagaataatcta |
252 |
Q |
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| T |
19268279 |
ggaccaacatgatcaaggagaataatcta |
19268307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 1588468 - 1588389
Alignment:
| Q |
118 |
taacagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt |
197 |
Q |
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| T |
1588468 |
taacagttgaaaatcaaaatcatcataagcagtagaattcagaccccataaagcaattaaagcttatcttcaagcaattt |
1588389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 1588956 - 1588841
Alignment:
| Q |
6 |
gttggcaaaggccaatactcctaggcagccactgtgaatgtt--gagagccaatccttaaatgatatcgtcacagacgagacgacattaataaaagatag |
103 |
Q |
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|||||||||||| || |||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
1588956 |
gttggcaaaggctaaaactcctcggcagccactgcgaatgttttgagaaccaatccttaaatgatatcgtcactgacgaaacgacattaataaaa-atag |
1588858 |
T |
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| Q |
104 |
caaaaaattaaagttaa |
120 |
Q |
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||||||||||||||||| |
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| T |
1588857 |
caaaaaattaaagttaa |
1588841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 1588362 - 1588334
Alignment:
| Q |
224 |
ggaccaacatgatcaaggagaataatcta |
252 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1588362 |
ggaccaacatgatcaaggagaataatcta |
1588334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 8152933 - 8152870
Alignment:
| Q |
121 |
cagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttat |
184 |
Q |
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||||||||||||||||||||||||||||||| |||| || | |||||||| ||| ||||||||| |
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| T |
8152933 |
cagttgaacatcaaaatcatcataagcagtataattaaacctccataaagtaatcaaagcttat |
8152870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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