View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607-Insertion-10 (Length: 224)
Name: NF4607-Insertion-10
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 50878529 - 50878745
Alignment:
| Q |
7 |
agcattctccaattgaagaatattgtaacgattacataaaataatgaagaagaaatattgtttacatttgatatgtgaccaattaagaacaacccaaacc |
106 |
Q |
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| T |
50878529 |
agcattctccaattgaagaatattgtaacgattacataaaataatgaagaataaatattttttacatttgatatgtgaccaattaagaacaacccaaacc |
50878628 |
T |
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| Q |
107 |
cccaccacgatgagtgtgggtggaagacgttttgtcaattttagaaaaattaaagttaaacctaaataaattaatttagaatttgcttggtaattaattt |
206 |
Q |
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| T |
50878629 |
cccaccacgatgagtgtgggtgggagacgttttgtcaattttagaaaaattaaagttaaacctaaataaattaatttagaatttgcttggtaattaagtt |
50878728 |
T |
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| Q |
207 |
aacaaacttaaaagcat |
223 |
Q |
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| T |
50878729 |
aacaaacttaaaagcat |
50878745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 36787077 - 36787296
Alignment:
| Q |
7 |
agcattctccaattgaagaatattgtaacgattacataaaataatgaagaagaaatattgtttacatttgatatgtg------accaattaagaacaacc |
100 |
Q |
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| T |
36787077 |
agcattctctaaccgaagaatactgtaacaattacacaaaataatgaagaataaatattatt-acatttgatatttgtgtttgaccaattaagaacaacc |
36787175 |
T |
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| Q |
101 |
caaacccccaccacgatgagtgtgggtggaagacgtt-ttgtcaattttagaaaaattaaagttaaacctaaataaattaatttagaatttgcttggtaa |
199 |
Q |
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| T |
36787176 |
caaaccctcggta--atgagtgtggctgggagacgttgttgtcaattttagaaaaattaaggttaaacctaaatgaattga-ttagagtttacttggtga |
36787272 |
T |
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| Q |
200 |
ttaatttaacaaacttaaaagcat |
223 |
Q |
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|||| ||||| || |||||||||| |
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| T |
36787273 |
ttaagttaacgaatttaaaagcat |
36787296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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