View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607-Insertion-11 (Length: 349)
Name: NF4607-Insertion-11
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 41773839 - 41774048
Alignment:
| Q |
8 |
aattctacttgatgttacttaagtatgtcagcatgtcagaatcaattttacaactctataatcaattttgactattctcaaaatgaaaatgaacatacaa |
107 |
Q |
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| T |
41773839 |
aattctactcgatgttacttaagtatgtcagcatgtcagaatcaattttacaactctataatcaattttgactattctcaaaatgaaaatcaacatacaa |
41773938 |
T |
|
| Q |
108 |
aacgctttacttttctcgataaaggttttcatttgctggtttgcctttgtggccatagatgtgtagctatcatttgattgacgctaaattttcatcacga |
207 |
Q |
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| T |
41773939 |
tacactttacttttctcaataaaggttttcatttgctggtttgcctttgtggccatagatgcgtagctatcatttgattgacgctaaattttcatcacga |
41774038 |
T |
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| Q |
208 |
gtgcaaatga |
217 |
Q |
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| T |
41774039 |
gtgcaaatga |
41774048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 41774047 - 41774118
Alignment:
| Q |
261 |
gatttggatcctctcatacaatttctcttacgttgttggtgctgaactaatctcaaccattcagtccacatg |
332 |
Q |
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| T |
41774047 |
gatttggatcctctcatacaatttctcttacgttgttggtgctgaactaatctcaaccattcagtccacatg |
41774118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 39974087 - 39974051
Alignment:
| Q |
47 |
aatcaattttacaactctataatcaattttgactatt |
83 |
Q |
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| T |
39974087 |
aatcaattctacaactctataatcaattttgactatt |
39974051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 6996495 - 6996455
Alignment:
| Q |
39 |
catgtcagaatcaattttacaactctataatcaattttgac |
79 |
Q |
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| T |
6996495 |
catgtcagaatcaattttacatccctagaatcaattttgac |
6996455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 34417640 - 34417711
Alignment:
| Q |
260 |
ggatttggatcctctcatacaatttctcttacgttgttggtgctgaactaatctcaaccattcagtccacatg |
332 |
Q |
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| T |
34417640 |
ggatttggattctctcctaccatttcttttaagttgttggtgtt-acttaatctcaacgattcagtccacatg |
34417711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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