View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607-Insertion-13 (Length: 361)

Name: NF4607-Insertion-13
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607-Insertion-13
NF4607-Insertion-13
[»] chr5 (17 HSPs)
chr5 (7-254)||(8806122-8806370)
chr5 (23-256)||(3654740-3654974)
chr5 (26-232)||(38915540-38915747)
chr5 (12-232)||(29789603-29789824)
chr5 (157-232)||(23318485-23318560)
chr5 (88-228)||(23151541-23151681)
chr5 (18-230)||(5121015-5121230)
chr5 (97-232)||(13820691-13820826)
chr5 (36-133)||(20891318-20891416)
chr5 (12-127)||(37134786-37134902)
chr5 (27-189)||(43171272-43171435)
chr5 (54-127)||(23319701-23319775)
chr5 (7-112)||(6769310-6769414)
chr5 (115-212)||(29150502-29150599)
chr5 (280-329)||(8806027-8806076)
chr5 (51-171)||(13826101-13826224)
chr5 (12-72)||(38491095-38491156)
[»] chr3 (17 HSPs)
chr3 (7-229)||(30190997-30191221)
chr3 (12-204)||(29713864-29714053)
chr3 (26-193)||(1424765-1424933)
chr3 (28-232)||(12893124-12893330)
chr3 (119-231)||(11830316-11830428)
chr3 (88-221)||(10992911-10993044)
chr3 (12-193)||(47185023-47185205)
chr3 (89-192)||(3917989-3918092)
chr3 (7-112)||(16876821-16876927)
chr3 (116-214)||(44663183-44663281)
chr3 (7-111)||(40145516-40145621)
chr3 (54-94)||(4127624-4127664)
chr3 (51-122)||(1698517-1698588)
chr3 (12-73)||(23044880-23044942)
chr3 (303-350)||(47185419-47185468)
chr3 (162-203)||(46947640-46947681)
chr3 (12-95)||(53472179-53472263)
[»] chr8 (13 HSPs)
chr8 (7-219)||(11648592-11648805)
chr8 (12-132)||(9382150-9382271)
chr8 (8-219)||(24190187-24190395)
chr8 (149-245)||(23232079-23232175)
chr8 (7-133)||(28374489-28374616)
chr8 (12-203)||(9137593-9137780)
chr8 (9-103)||(23232178-23232274)
chr8 (143-231)||(24682815-24682904)
chr8 (152-232)||(961163-961243)
chr8 (12-78)||(11994691-11994758)
chr8 (12-72)||(28509309-28509370)
chr8 (18-105)||(32073322-32073413)
chr8 (302-347)||(11648101-11648148)
[»] chr2 (19 HSPs)
chr2 (58-254)||(31548966-31549162)
chr2 (12-232)||(19091009-19091229)
chr2 (7-232)||(13597700-13597926)
chr2 (18-193)||(25621502-25621678)
chr2 (7-133)||(30386906-30387033)
chr2 (18-190)||(14904088-14904261)
chr2 (53-232)||(6883100-6883278)
chr2 (18-213)||(11199129-11199325)
chr2 (51-116)||(9057496-9057561)
chr2 (51-133)||(10023008-10023090)
chr2 (144-229)||(43673105-43673191)
chr2 (12-72)||(7880344-7880405)
chr2 (18-73)||(29303231-29303287)
chr2 (55-133)||(38566131-38566206)
chr2 (152-203)||(38422792-38422843)
chr2 (12-73)||(19678077-19678139)
chr2 (96-214)||(24484616-24484734)
chr2 (280-347)||(31548851-31548920)
chr2 (23-71)||(25416047-25416096)
[»] chr4 (16 HSPs)
chr4 (7-225)||(41509027-41509245)
chr4 (7-231)||(10373196-10373423)
chr4 (12-219)||(1843000-1843204)
chr4 (12-133)||(10142201-10142323)
chr4 (18-219)||(9921694-9921891)
chr4 (12-213)||(52459074-52459276)
chr4 (12-213)||(52460331-52460533)
chr4 (7-133)||(21320065-21320192)
chr4 (12-192)||(24611216-24611397)
chr4 (157-232)||(25201197-25201272)
chr4 (51-116)||(29282952-29283017)
chr4 (12-94)||(42512194-42512277)
chr4 (89-171)||(3665324-3665406)
chr4 (141-219)||(9896383-9896460)
chr4 (54-126)||(25201111-25201183)
chr4 (150-203)||(6830670-6830723)
[»] chr1 (10 HSPs)
chr1 (23-232)||(5509680-5509890)
chr1 (7-203)||(24185519-24185716)
chr1 (7-133)||(47559476-47559602)
chr1 (12-192)||(5209545-5209726)
chr1 (12-193)||(12027845-12028027)
chr1 (56-133)||(47397450-47397528)
chr1 (12-105)||(9023271-9023365)
chr1 (12-49)||(36296751-36296788)
chr1 (12-49)||(42722286-42722323)
chr1 (113-213)||(44310547-44310647)
[»] chr7 (15 HSPs)
chr7 (7-202)||(40934101-40934297)
chr7 (51-225)||(9420553-9420727)
chr7 (9-232)||(45445899-45446117)
chr7 (23-232)||(21863668-21863877)
chr7 (7-133)||(28460165-28460294)
chr7 (13-101)||(39038847-39038936)
chr7 (23-228)||(5770939-5771141)
chr7 (8-102)||(8604552-8604647)
chr7 (7-112)||(35118193-35118299)
chr7 (152-231)||(39038750-39038829)
chr7 (12-73)||(8069629-8069691)
chr7 (7-104)||(43179378-43179476)
chr7 (12-73)||(48238508-48238570)
chr7 (13-73)||(6189387-6189448)
chr7 (12-49)||(48636751-48636788)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-232)||(98176-98385)
[»] scaffold0263 (1 HSPs)
scaffold0263 (8-232)||(18424-18649)
[»] scaffold1364 (1 HSPs)
scaffold1364 (73-232)||(968-1127)
[»] scaffold1266 (1 HSPs)
scaffold1266 (12-232)||(1371-1592)
[»] chr6 (8 HSPs)
chr6 (56-228)||(22524816-22524988)
chr6 (12-193)||(11680721-11680903)
chr6 (55-133)||(19108034-19108112)
chr6 (291-329)||(15603786-15603824)
chr6 (12-72)||(33516611-33516672)
chr6 (23-171)||(26817425-26817575)
chr6 (304-361)||(1831209-1831268)
chr6 (302-330)||(11680480-11680508)
[»] scaffold0160 (1 HSPs)
scaffold0160 (23-171)||(25187-25336)
[»] scaffold0178 (1 HSPs)
scaffold0178 (12-99)||(2387-2475)
[»] scaffold0116 (1 HSPs)
scaffold0116 (12-217)||(40874-41076)
[»] scaffold0137 (1 HSPs)
scaffold0137 (89-192)||(21299-21402)
[»] scaffold0552 (1 HSPs)
scaffold0552 (150-203)||(10171-10224)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 8806370 - 8806122
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| ||||||||| |  |  || ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  8806370 attttataacaaaacaaattatattttagttgaaaatgagtatagtaaagaaattaattttaatcttgtctttcaaaggtttcaaaaatttaaattatat 8806271  T
Q  106 aattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaacca 205  Q
     ||||| ||||||||||||||| |||||  |||| ||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |     
T  8806270 cattatagtaatgtcaactttcttgaattgattaaaaggattgcaaaattgaatttgataatacaaaatcatgtgagacgcattcatgatcatgaaatcg 8806171  T
Q  206 atttgagacgcatttaggatcatgtgggtctattgttctcgggtgctaa 254  Q
    || ||||||||||||||||||| ||||  ||||||||||| || |||||    
T  8806170 atgtgagacgcatttaggatcacgtggacctattgttctcaggcgctaa 8806122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 3654740 - 3654974
Alignment:
Q  23 aattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtca 121  Q
    |||||||||||| |||||||||| |||  |||||||| ||||||||||||||||||| |||||||  ||||||||||||||||| || || |||||||||    
T  3654740 aattatattttagttgaaaatggacctactagagaaactaattttaatcttgtctttcaaaggttcaaaaaaattaaattatatcatcatagtaatgtca 3654839  T
Q  122 actttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcattta 221  Q
    |||||| |||||  |||| |  |||| ||||||||||||||| |||||||||| |||  ||||||||| |||||||||||||  || |||||| ||||||    
T  3654840 actttcttgaattgattaaagagattgcaaaattaaatttgagaatgcaaaatcatgcaagacgcatttatgatcatgaaactgatatgagacacattta 3654939  T
Q  222 ggatcatgtgggtctattgttctcgggtgctaata 256  Q
    | ||||||||   || |||||||| ||||| ||||    
T  3654940 gaatcatgtgaccctgttgttctcaggtgccaata 3654974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 38915747 - 38915540
Alignment:
Q  26 tatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaact 124  Q
    ||||||||| |||||||| |||||  ||||||||||| | ||||| |||||||| ||||||| ||||||||||||||||||  |||| ||||||||||||    
T  38915747 tatattttagttgaaaataggcctactagagaaattagtcttaatgttgtctttcaaaggttccaaaaaattaaattatatcgttatagtaatgtcaact 38915648  T
Q  125 ttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttagga 224  Q
    |||  ||||  || | ||||||| ||||||| ||||||||||||| |||| ||| || |||||||||||||||| ||||  || || |||||||||||||    
T  38915647 ttctagaattgataaaaaggattgcaaaattgaatttgataatgctaaatcatgcgatacgcattcatgatcattaaactgatgtgggacgcatttagga 38915548  T
Q  225 tcatgtgg 232  Q
    ||||||||    
T  38915547 tcatgtgg 38915540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 29789603 - 29789824
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||| ||||||| ||||||||||| ||  ||||||||||||| |||||||||| ||| |||| |||||||||| |||||||||| | ||    
T  29789603 ataacaaaacaaattctattttagttgaaaatgggtctactagagaaattaatcttaatcttgtttttcaaagatttcaaaaaaataaattatatcaata 29789702  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttg 210  Q
    | |||| |||||||||| |||||  ||||  ||| || || |||| ||| |||||||| || || ||| ||||| ||||||||||||||| ||| || ||    
T  29789703 tagtaacgtcaactttcatgaattgattaagagggttgcacaattgaatatgataatgtaagatcatgcgagacacattcatgatcatgagaccgatgtg 29789802  T
Q  211 agacgcatttaggatcatgtgg 232  Q
    |||||||||| |||||||||||    
T  29789803 agacgcatttgggatcatgtgg 29789824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 23318560 - 23318485
Alignment:
Q  157 aatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgg 232  Q
    |||||||||||||||||| ||| |||| |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  23318560 aatttgataatgcaaaatcatgcgagatgcattcattatcatgaaactaatgtgagacgcatttaggatcatgtgg 23318485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 23151541 - 23151681
Alignment:
Q  88 caaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgca 187  Q
    ||||||| |||||||||| | ||  |||||||||| |||| |||||  |||  ||||||| ||||||| ||||||||| ||||| || ||| |||| |||    
T  23151541 caaaaaaataaattatatcaatactgtaatgtcaaatttcttgaattgattgaaaggattgcaaaattgaatttgatattgcaagatcatgcgagatgca 23151640  T
Q  188 ttcatgatcatgaaaccaatttgagacgcatttaggatcat 228  Q
    ||||||||||||||||| || | ||||||||| | ||||||    
T  23151641 ttcatgatcatgaaaccgatgtaagacgcattcatgatcat 23151681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 5121230 - 5121015
Alignment:
Q  18 aaactaattatattttacttgaaaatgggcctt-tagagaaatta--attttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggt 114  Q
    |||| |||| ||||||| ||||||||  ||||  |||||||||||  || |||||||||||||| |||||||  |||||| |||||||||| | ||| ||    
T  5121230 aaacaaattttattttaattgaaaattagcctactagagaaattataatcttaatcttgtctttcaaaggttctaaaaaaataaattatatcaatatagt 5121131  T
Q  115 aatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaa-attatgtgagacgcattcatgatcatgaaaccaatttgaga 213  Q
     |||||||||||| |||||   ||  ||||||| || |||| |||||||||||||||| || |||  |||| |||| |||||| ||||    || |||||    
T  5121130 gatgtcaactttcttgaattgtttgaaaggattgcataattgaatttgataatgcaaagatcatgcaagacacatt-atgatcctgaactagatgtgaga 5121032  T
Q  214 cgcatttaggatcatgt 230  Q
    |||||||||||||||||    
T  5121031 cgcatttaggatcatgt 5121015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 13820826 - 13820691
Alignment:
Q  97 aaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatc 196  Q
    ||||||||| | ||| ||||||||||||||| | |||  |||| ||||||| || |||| ||||||||| ||||| || |||  ||||||||||| | ||    
T  13820826 aaattatatcaatatagtaatgtcaactttcttaaattgattaaaaggattgcataattgaatttgatagtgcaacatcatgcaagacgcattcacgttc 13820727  T
Q  197 atgaaaccaatttgagacgcatttaggatcatgtgg 232  Q
    |||||||| || |||| ||||||| |||||| ||||    
T  13820726 atgaaaccgatgtgaggcgcatttgggatcacgtgg 13820691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 20891416 - 20891318
Alignment:
Q  36 ttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaat 133  Q
    |||||||||||||| |||||||||||||| ||||| |||||||| |||| || | ||||| |||||||||| | ||| | ||||||||||||| |||||    
T  20891416 ttgaaaatgggcctattagagaaattaatcttaattttgtctttcaaagattcccaaaaaataaattatattaatatagaaatgtcaactttcttgaat 20891318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 37134786 - 37134902
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||| ||||||||   |||  |||| | ||||||||| ||||||||||| ||||||||| ||||| |||||||||| | ||    
T  37134786 ataacaaaacaaattatattttagttgaaaatacacctactagaaatattaattttgatcttgtctttcaaaggtttcgaaaaaataaattatatcaata 37134885  T
Q  111 tggtaatgtcaactttc 127  Q
    | |||||||||| ||||    
T  37134886 tagtaatgtcaattttc 37134902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 43171435 - 43171272
Alignment:
Q  27 atattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactt 125  Q
    |||||||| |||||||||| |||  ||||||||||||| ||||| || | ||| ||||||| ||||||| ||||||| || | ||| |||||||||||||    
T  43171435 atattttagttgaaaatggacctactagagaaattaatcttaattttttttttcaaaggttccaaaaaaataaattacatcaatatagtaatgtcaactt 43171336  T
Q  126 tcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcatt 189  Q
    || | |||  ||   || |||| || | |||||||||||||||||| || ||| ||||| ||||    
T  43171335 tctttaattgatcgaaatgattgcatagttaaatttgataatgcaagatcatgcgagacacatt 43171272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 23319775 - 23319701
Alignment:
Q  54 agaaattaattttaatcttgtcttttaaaggtttcaaaaaa-ttaaattatataattatggtaatgtcaactttc 127  Q
    |||||||||| ||||| |||||||| || |||||||||||| ||||||||||| | ||| |||||||||||||||    
T  23319775 agaaattaatcttaattttgtctttcaagggtttcaaaaaaattaaattatatcaatatagtaatgtcaactttc 23319701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 6769414 - 6769310
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatata 106  Q
    |||||||||| |||| |||||||||||| || |||||  ||||    |||||||||||||||| |||||||| |||  || ||||||||||||||||||     
T  6769414 attttataacaaaacaaattatattttagttaaaaataagcctact-agaaattaattttaatgttgtctttgaaattttccaaaaaattaaattatatc 6769316  T
Q  107 attatg 112  Q
    ||||||    
T  6769315 attatg 6769310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 29150502 - 29150599
Alignment:
Q  115 aatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgag 212  Q
    ||||||||||||| |||||  |||  || |||| || |||| || |||||||||||| || ||||| |||||||||||||| ||||||||||| ||||    
T  29150502 aatgtcaactttcttgaattgattgaaaagattgcataattgaagttgataatgcaatatcatgtgtgacgcattcatgattatgaaaccaatatgag 29150599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 8806076 - 8806027
Alignment:
Q  280 tgagacgcgtttagtaatgtaaacttttttggtgttattattcttaggtg 329  Q
    |||||||| ||||||||||| ||||||||| ||||||||| |||||||||    
T  8806076 tgagacgcatttagtaatgtcaactttttttgtgttattactcttaggtg 8806027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 13826224 - 13826101
Alignment:
Q  51 tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaat---taaattatataattatggtaatgtcaactttcgtgaataaattataaggatt 147  Q
    |||| |||||||| |||||||||||| | |||  || ||||||||   |||||||||| | ||| ||||||||||||||| |||||  ||   |||||||    
T  13826224 tagataaattaatcttaatcttgtctctcaaaaattccaaaaaataaataaattatatcaatatagtaatgtcaactttcttgaattgatcgaaaggatt 13826125  T
Q  148 acaaaattaaatttgataatgcaa 171  Q
     || |||| |||||||||||||||    
T  13826124 tcataattgaatttgataatgcaa 13826101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 38491095 - 38491156
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatctt 72  Q
    ||||| |||| |||||||||||| ||||||||||||||  |||| |||||||| ||||||||    
T  38491095 ataacaaaacaaattatattttagttgaaaatgggcctactagataaattaatcttaatctt 38491156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 30191221 - 30190997
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaa-ttaaattata 104  Q
    |||||||||| |||  |||||||||||| |||||||| |||||  ||||||||||||| ||||| |||||||| ||| ||| ||||||| ||||||||||    
T  30191221 attttataacaaaagaaattatattttagttgaaaataggcctactagagaaattaatcttaatgttgtctttcaaatgttccaaaaaaattaaattata 30191122  T
Q  105 taattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaacc 204  Q
    ||||||| ||||||||||||||| |||||  |||| ||||||| ||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||     
T  30191121 taattatagtaatgtcaactttcttgaattgattaaaaggattgcaaaattgaatttgataatgctaaatcatgcgagacgcattcatgatcatgaaact 30191022  T
Q  205 aatttgagacgcatttaggatcatg 229  Q
     || |||||||||||||||||||||    
T  30191021 gatgtgagacgcatttaggatcatg 30190997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 29713864 - 29714053
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattat 111  Q
    ||||| |||| |||||||||||| ||||||||| ||||     ||||||||| ||||||||||||||  | |||| ||||||| |||||||||| | |||    
T  29713864 ataacaaaacaaattatattttagttgaaaatgagcctac---gaaattaatcttaatcttgtctttctatggttccaaaaaaataaattatatcaatat 29713960  T
Q  112 ggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaacc 204  Q
     |||||||||| |||| |||||  |||  ||||||| ||||||| ||||| ||| ||||| || |||||||||||||||||||||||||||||    
T  29713961 tgtaatgtcaaatttcttgaattgattgaaaggattgcaaaattgaatttaatattgcaagatcatgtgagacgcattcatgatcatgaaacc 29714053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 1424765 - 1424933
Alignment:
Q  26 tatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaact 124  Q
    ||||||||| |||||||| |||||  ||||||||||||| ||||| |||||| | ||||||| ||||||||||||||||||  |||| ||||||||||||    
T  1424765 tatattttagttgaaaataggcctactagagaaattaatcttaatgttgtctatcaaaggttccaaaaaattaaattatatcgttatagtaatgtcaact 1424864  T
Q  125 ttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatg 193  Q
    |||  ||||  || | ||||||| ||||||| ||||||||||||| |||| ||| || |||||||||||    
T  1424865 ttctagaattgataaaaaggattgcaaaattgaatttgataatgctaaatcatgcgatacgcattcatg 1424933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 12893124 - 12893330
Alignment:
Q  28 tattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaat-taaattatataattatggtaatgtcaactt 125  Q
    ||||||| |||||||||| |||  |||||||||||||||||||||| ||||| |||  || |||||||  |||||||||| |  || |||||||||||||    
T  12893124 tattttagttgaaaatggacctactagagaaattaattttaatcttatctttcaaatattccaaaaaaaataaattatatcaacatagtaatgtcaactt 12893223  T
Q  126 tcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggat 225  Q
    || |||||  |||| ||||||| || |||| ||||||||||||||| ||  ||  | ||||||||||||| |||||||| || |||||| ||||| ||||    
T  12893224 tcttgaattgattaaaaggattgcataattgaatttgataatgcaagatcttgcaaaacgcattcatgattatgaaaccgatgtgagacacatttgggat 12893323  T
Q  226 catgtgg 232  Q
    |||||||    
T  12893324 catgtgg 12893330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 11830428 - 11830316
Alignment:
Q  119 tcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcat 218  Q
    ||||||||| |||||  |||| ||||||| ||||||| ||||||||||||| ||||  |||||||| ||||||||||||||||||  || ||||||||||    
T  11830428 tcaactttcttgaattgattaaaaggattgcaaaattgaatttgataatgctaaatcttgtgagacacattcatgatcatgaaactgatgtgagacgcat 11830329  T
Q  219 ttaggatcatgtg 231  Q
    |||||||||||||    
T  11830328 ttaggatcatgtg 11830316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 10993044 - 10992911
Alignment:
Q  88 caaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgca 187  Q
    ||||||| |||||||||| | ||| ||||||||||||||| |||||  |||  ||||||| ||||||| ||||||||| ||||| || ||| ||||||||    
T  10993044 caaaaaaataaattatatcaatattgtaatgtcaactttcttgaattgattgaaaggattgcaaaattgaatttgatattgcaagatcatgcgagacgca 10992945  T
Q  188 ttcatgatcatgaaaccaatttgagacgcattta 221  Q
    |||| |||||||||||| || ||| |||||||||    
T  10992944 ttcaagatcatgaaaccgatgtgaaacgcattta 10992911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 47185023 - 47185205
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||| |||||||||| ||   ||||||||||||| |||||||||||||| ||||||| |||||||  |||||| || | ||    
T  47185023 ataacaaaacaaattatattttagttgaaaatggacccactagagaaattaatcttaatcttgtctttcaaaggttccaaaaaaacaaattacatcaata 47185122  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatg 193  Q
    |  |||||||||||||| |||||  |||  || |||| || | || ||||||||| | |||||| ||||||||| ||||||||    
T  47185123 taataatgtcaactttcttgaattgattgaaatgattgcatagttgaatttgatagtacaaaatcatgtgagacacattcatg 47185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 3918092 - 3917989
Alignment:
Q  89 aaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcat 188  Q
    ||||||||||||||||| | ||| ||||||||||||||| |||||  |||  ||| |||  | |||| ||||||||||||||| || ||| |||||||||    
T  3918092 aaaaaattaaattatatcaatatagtaatgtcaactttcttgaattgattgaaagaattgaataattgaatttgataatgcaagatcatgcgagacgcat 3917993  T
Q  189 tcat 192  Q
    ||||    
T  3917992 tcat 3917989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 16876927 - 16876821
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| ||| |||||||| ||||||||  | |   ||||||||||||| ||||| |||||||| ||| ||| ||||||||||||||||||    
T  16876927 attttataacaaaacaaataatattttagttgaaaataagtcaactagagaaattaatcttaatgttgtctttaaaatgttgcaaaaaattaaattatat 16876828  T
Q  106 aattatg 112  Q
     ||||||    
T  16876827 cattatg 16876821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 44663281 - 44663183
Alignment:
Q  116 atgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagac 214  Q
    ||||||| |||| |||||  |||  ||||||| ||||||||||||||||| ||||| || ||| |||||| |||||| ||||||||||| || ||||||    
T  44663281 atgtcaaatttcttgaattgattgaaaggattgcaaaattaaatttgatattgcaagatcatgcgagacgtattcattatcatgaaaccgatgtgagac 44663183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 40145516 - 40145621
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| || |||||  | ||  |||| |||||||| ||||| |||| ||||||| ||| |||| |||||||||||||    
T  40145516 attttataacaaaacaaattatattttagttcaaaataagtctaatagaaaaattaatcttaatgttgttttttaaatgttccaaagaattaaattatat 40145615  T
Q  106 aattat 111  Q
     |||||    
T  40145616 cattat 40145621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 4127624 - 4127664
Alignment:
Q  54 agaaattaattttaatcttgtcttttaaaggtttcaaaaaa 94  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  4127624 agaaattaatcttaatcttgtctttcaaaggtttcaaaaaa 4127664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 1698517 - 1698588
Alignment:
Q  51 tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaa 122  Q
    |||| |||||||| |||||||||||||| |||| || ||| ||| |||||||||| | ||| ||||||||||    
T  1698517 tagataaattaatcttaatcttgtctttgaaagattccaagaaaataaattatatcaatatagtaatgtcaa 1698588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 23044942 - 23044880
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttg 73  Q
    ||||| |||| |||||||||||| ||||||||||||||  | ||||||||||| |||||||||    
T  23044942 ataacaaaacaaattatattttagttgaaaatgggcctactggagaaattaatcttaatcttg 23044880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 47185419 - 47185468
Alignment:
Q  303 cttttttggtgttattattcttaggtgt--aaattgcagtctacttcaca 350  Q
    ||||| ||||||||||||||||||||||  ||||| ||||||||||||||    
T  47185419 cttttctggtgttattattcttaggtgtcaaaatttcagtctacttcaca 47185468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 46947640 - 46947681
Alignment:
Q  162 gataatgcaaaattatgtgagacgcattcatgatcatgaaac 203  Q
    |||||||||| || |||||||||||||||||||||| |||||    
T  46947640 gataatgcaagatcatgtgagacgcattcatgatcaagaaac 46947681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 53472179 - 53472263
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaat 95  Q
    ||||| |||| |||||||||||| ||||||||| ||||  || | |||||||| |||||| ||| ||| ||||||| ||||||||    
T  53472179 ataacaaaacaaattatattttagttgaaaatgagcctactacataaattaatcttaatcatgtatttcaaaggttccaaaaaat 53472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 11648805 - 11648592
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggc-ctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| |||||||||| | | |||||||||||||| | |||||||||||| ||||||| |||| |||||||||||||    
T  11648805 attttataacaaaacaaattatattttagttgaaaatggactcattagagaaattaatctcaatcttgtctttcaaaggttccaaataattaaattatat 11648706  T
Q  106 aattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaacca 205  Q
     |||||  ||| || ||||||| |||||  |||| || |||| ||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||     
T  11648705 cattatactaaggttaactttcttgaattgattaaaatgattgcaaaattgaatttgataatgcaaaatcatgcgagacacattcatgatcatgaaaccg 11648606  T
Q  206 atttgagacgcatt 219  Q
    || |||||||||||    
T  11648605 atgtgagacgcatt 11648592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 9382271 - 9382150
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||| || | ||    
T  9382271 ataacaaaacaaattatattttagttgaaaatggacctattagaaaaattaattttaatcttttctttcaaaggttccaaaaaattaaattacatcaata 9382172  T
Q  111 tggtaatgtcaactttcgtgaa 132  Q
    | ||||||||||||||| ||||    
T  9382171 tagtaatgtcaactttcttgaa 9382150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 24190395 - 24190187
Alignment:
Q  8 ttttataaccaaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataa 107  Q
    ||||||||| |||| |||||||||||| ||||||||| | ||     ||| ||||| ||||| ||||||||  | |||||||||||| |||||||||| |    
T  24190395 ttttataacaaaacaaattatattttagttgaaaatgagtctac---gaagttaatcttaattttgtctttctatggtttcaaaaaaataaattatatca 24190299  T
Q  108 ttatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaat 207  Q
     ||| ||||||||||||||  |||||  |||  ||||||| ||||||| ||| ||||| ||||| || ||  |||||||||||| ||||||||| || ||    
T  24190298 atattgtaatgtcaacttttttgaatggattgaaaggattgcaaaattgaatatgatattgcaagatcatacgagacgcattcaagatcatgaatccgat 24190199  T
Q  208 ttgagacgcatt 219  Q
     |||||| ||||    
T  24190198 gtgagacacatt 24190187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 23232175 - 23232079
Alignment:
Q  149 caaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgggtctattgttctc 245  Q
    ||||||| |||||||||||||| ||| |||||| || ||||||||||||| ||||| || ||||||||||||||||||||||||  ||||| |||||    
T  23232175 caaaattgaatttgataatgcagaatcatgtgaaacacattcatgatcataaaaccgatgtgagacgcatttaggatcatgtggccctattcttctc 23232079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 28374616 - 28374489
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    ||||||||||||||  |||||||||||| ||||||||| |  |  ||||||||||||| |||||||||| ||||||| |||  |||||||||||||||||    
T  28374616 attttataaccaaataaattatattttagttgaaaatgagtttactagagaaattaatcttaatcttgttttttaaatgttcaaaaaaattaaattatat 28374517  T
Q  106 aattatggtaatgtcaactttcgtgaat 133  Q
     | ||| ||||| ||||||||| |||||    
T  28374516 caatatagtaatttcaactttcttgaat 28374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 9137593 - 9137780
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattat 111  Q
    ||||| |||| |||||||||||| ||||||||| |||| |  |    ||||| ||||||||||||||  ||||||  |||||| | |||||||| | |||    
T  9137593 ataacaaaacaaattatattttagttgaaaatgagcctatgta----ttaatcttaatcttgtctttctaaggttcaaaaaaaattaattatatcaatat 9137688  T
Q  112 ggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac 203  Q
      |||||||||  ||| |||||  |||  ||||||| ||||||| ||||| ||| || || || ||| ||||||||||||||||||||||||    
T  9137689 tataatgtcaaaattcttgaattgattgaaaggatttcaaaattgaatttaatattgtaagatcatgcgagacgcattcatgatcatgaaac 9137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 23232274 - 23232178
Alignment:
Q  9 tttataaccaaactaa-ttatattttacttgaaaatgggcctttaga-gaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattat 103  Q
    |||||||||||| ||| |||||||||| ||||||||| ||||   || |||||||||||||||||| ||||| ||| ||| ||||||||||||||||    
T  23232274 tttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttttctttcaaatgttccaaaaaattaaattat 23232178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 24682815 - 24682904
Alignment:
Q  143 ggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac-caatttgagacgcatttaggatcatgtg 231  Q
    ||||| || |||| ||||||||||||||| || |||  |||| |||||||||||||||||| | || ||| | |||||||||||||||||    
T  24682815 ggattgcagaattgaatttgataatgcaagatgatgcaagacacattcatgatcatgaaacacgatgtgacatgcatttaggatcatgtg 24682904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 961243 - 961163
Alignment:
Q  152 aattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgg 232  Q
    |||| ||||||||||| ||| | |||||| ||||||||  ||||||||||||| || ||||| |||| ||||| |||||||    
T  961243 aattgaatttgataatacaagaatatgtgggacgcatttgtgatcatgaaaccgatgtgagatgcatgtaggaccatgtgg 961163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 11994758 - 11994691
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttt 78  Q
    ||||| |||| ||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||| ||||    
T  11994758 ataacaaaacgaataatattttacttgaaaatgggcctattagaaaaattaatcttaatattgccttt 11994691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 28509309 - 28509370
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatctt 72  Q
    ||||| |||| |||||||||||| ||||||||||||||  |||| |||||||| ||||||||    
T  28509309 ataacaaaacaaattatattttagttgaaaatgggcctactagaaaaattaatcttaatctt 28509370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 32073322 - 32073413
Alignment:
Q  18 aaactaattatattttacttgaaaatgggcct---ttagagaaattaattttaatcttgtcttttaaaggtttcaaaa-aattaaattatat 105  Q
    |||| |||||||||||| |||||||||| |     |||||||||||||| ||||||||||| || ||||||| ||||| || ||||||||||    
T  32073322 aaacgaattatattttagttgaaaatggacacatattagagaaattaatcttaatcttgtcgttcaaaggttccaaaataaataaattatat 32073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 11648148 - 11648101
Alignment:
Q  302 acttttttggtgttattattcttaggtg--taaattgcagtctacttc 347  Q
    ||||||||||||||||||||||||||||   ||||| |||||||||||    
T  11648148 acttttttggtgttattattcttaggtgctaaaatttcagtctacttc 11648101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 31549162 - 31548966
Alignment:
Q  58 attaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaa 157  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||| ||||||||||||||  |||||  |||| || |||| ||||||| |    
T  31549162 attaattttaatcttgtttttcaaaggttccaaaaaattaaattatatcattatagtaatgtcaacttttttgaattgattaaaaagattgcaaaattga 31549063  T
Q  158 atttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgggtctattgttctcgggtgctaa 254  Q
    ||||||||||||| ||| ||| || || ||||| ||||||||||||| || | |||||||||||||||||||||   ||||||||||||||||||||    
T  31549062 atttgataatgcacaatcatgcgaaacacattcgtgatcatgaaaccgatgtaagacgcatttaggatcatgtgtccctattgttctcgggtgctaa 31548966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 19091229 - 19091009
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||| ||||||||||||||  ||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||| | ||    
T  19091229 ataacaaaacaaattatattttagttgaaaatgggcctactagagaaattaatcttaatcttatctttcaaaggtttcaaaaaat-aaattatatcaata 19091131  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttg 210  Q
    | |||||||||| |||| |||||  |||  |||||||  |||||| ||||||||||||||| || ||| ||| |||||||| | |||||||||| ||  |    
T  19091130 tagtaatgtcaaatttcatgaattgattgaaaggattgaaaaattgaatttgataatgcaagatcatgcgagtcgcattcacgttcatgaaaccgatgcg 19091031  T
Q  211 agacgcatttaggatcatgtgg 232  Q
    ||||||||||||||||||||||    
T  19091030 agacgcatttaggatcatgtgg 19091009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 13597926 - 13597700
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctttagag-aaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| |||||||||  |||    || |||||||| ||||||||||| |||||||| | ||||||||| ||||||||    
T  13597926 attttataacaaaacaaattatattttagttgaaaatgaacctactaagcaaattaatattaatcttgtcatttaaaggatccaaaaaatttaattatat 13597827  T
Q  106 aattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaacca 205  Q
     ||||| ||||| ||| ||||  | |||  |||| ||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||      
T  13597826 gattatagtaatttcatcttttttaaattgattaaaaggattgcaaaattaaatttgataatgcaaaatcatgcgagacacattcatgatcatgaaactg 13597727  T
Q  206 atttgagacgcatttaggatcatgtgg 232  Q
    || |||||||||||||||| |||||||    
T  13597726 atgtgagacgcatttaggaacatgtgg 13597700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 25621502 - 25621678
Alignment:
Q  18 aaactaattatattttacttgaaaatgggccttta-gagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaa 116  Q
    |||| |||||||||||| |||||||||| |||  | || |||||||| |||||||||||||||||||||||||||||| ||||||||||||  || ||||    
T  25621502 aaacaaattatattttagttgaaaatggacctacaagataaattaatcttaatcttgtcttttaaaggtttcaaaaaaataaattatataaaaatagtaa 25621601  T
Q  117 tgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatg 193  Q
    ||||||||||| |||||  |||  ||| ||| || | || ||||||||||||||| || ||| ||||| ||||||||    
T  25621602 tgtcaactttcttgaattgattgaaagaattgcatagttgaatttgataatgcaagatcatgcgagacacattcatg 25621678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 30386906 - 30387033
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| || ||||||||| |  |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30386906 attttataacaaaacaaattatattttagttaaaaatgggcttactagataaattaatcttaatcttgtcttttaaaggttccaaaaaattaaattatat 30387005  T
Q  106 aattatggtaatgtcaactttcgtgaat 133  Q
     | ||| ||||||||||||||| |||||    
T  30387006 caatatagtaatgtcaactttcttgaat 30387033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 14904088 - 14904261
Alignment:
Q  18 aaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaa 116  Q
    |||| |||||||||||| |||||||| | |||  |||| ||||||||||||||||||||||| ||||||| ||||||| ||||||| || | ||| ||||    
T  14904088 aaacaaattatattttagttgaaaatagacctactagaaaaattaattttaatcttgtctttcaaaggttacaaaaaaataaattacatcaatatagtaa 14904187  T
Q  117 tgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattc 190  Q
    ||||||||||| |||||  |||  ||||||| ||   || ||||||||||||||| || ||| ||||| |||||    
T  14904188 tgtcaactttcttgaattgattgaaaggattgcatggttgaatttgataatgcaagatcatgcgagacacattc 14904261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 6883100 - 6883278
Alignment:
Q  53 gagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaa 152  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| |||||| ||   ||| ||||||||||||||| |||||  |||  |||||||  | |    
T  6883100 gagaaattaatcttaatcttgttttttaaaggttccaaaaaat-aaattacatcgatatagtaatgtcaactttcttgaattgattgaaaggattctaga 6883198  T
Q  153 attaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgg 232  Q
    ||| |||||||| ||| || || | ||||||| ||||| |||||||||||||||| ||| ||  ||||  ||||||||||    
T  6883199 attgaatttgattatggaagatcacgtgagacacattcttgatcatgaaaccaatgtgaaacatatttgagatcatgtgg 6883278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 11199325 - 11199129
Alignment:
Q  18 aaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaa 116  Q
    |||| |||| ||||||| |||||||||||| |  ||||||||||||| |||||||||| ||| |||| |||||||||| ||||| |||| | ||| ||||    
T  11199325 aaacaaattctattttagttgaaaatgggcatactagagaaattaatcttaatcttgtttttcaaagatttcaaaaaaataaatcatatcaatatagtaa 11199226  T
Q  117 tgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgaga 213  Q
    |||||| |||| || ||  |||  |||||||  | |||| ||||||||||| ||| || |||||| || || |||| || |||||||| || |||||    
T  11199225 tgtcaattttcttgtattgattgaaaggattgtagaattgaatttgataattcaagatcatgtgaaacacactcatcattatgaaaccgatgtgaga 11199129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 9057496 - 9057561
Alignment:
Q  51 tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaa 116  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||| ||||||||||    
T  9057496 tagagaaattaatcttaatattgtctttcaaaggttccaaaaaattaaattatatcattatggtaa 9057561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 10023008 - 10023090
Alignment:
Q  51 tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaat 133  Q
    ||||||||||||| |||||| |||||||||||||||||||||||  |||||||||   |||  |||||||||||||| |||||    
T  10023008 tagagaaattaatcttaatcatgtcttttaaaggtttcaaaaaaacaaattatatctatataataatgtcaactttcttgaat 10023090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 43673191 - 43673105
Alignment:
Q  144 gattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac-caatttgagacgcatttaggatcatg 229  Q
    |||||||||||| ||||||||||||||| || |||| |||| ||||| |||||||||||| |||| |||||| |||||| |||||||    
T  43673191 gattacaaaattgaatttgataatgcaagatcatgtaagacacattcttgatcatgaaacacaatgtgagacacatttacgatcatg 43673105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 7880405 - 7880344
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatctt 72  Q
    ||||| |||| |||||||||||| ||||||||||||||  ||||||||||||| ||||||||    
T  7880405 ataacaaaacaaattatattttagttgaaaatgggcctactagagaaattaatcttaatctt 7880344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29303231 - 29303287
Alignment:
Q  18 aaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttg 73  Q
    |||| |||||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  29303231 aaacaaattatattttagttgaaaatgggcctactagagaaattaatcttaatcttg 29303287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 38566206 - 38566131
Alignment:
Q  55 gaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaat 133  Q
    ||||||||| ||||||||||||||  |||||||||||||   ||||||||| | ||| |||||||||| |||| |||||    
T  38566206 gaaattaatcttaatcttgtctttctaaggtttcaaaaa---aaattatatcaatattgtaatgtcaaatttcttgaat 38566131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 38422843 - 38422792
Alignment:
Q  152 aattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac 203  Q
    |||| ||||||||||||||| || ||||||||| ||||||||||| ||||||    
T  38422843 aattgaatttgataatgcaagatcatgtgagacacattcatgatcgtgaaac 38422792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 19678077 - 19678139
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttg 73  Q
    ||||| |||| |||||||||||| ||||||||||| ||  ||||||||||||| |||||||||    
T  19678077 ataacaaaacaaattatattttagttgaaaatgggtctactagagaaattaatcttaatcttg 19678139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 24484616 - 24484734
Alignment:
Q  96 taaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgat 195  Q
    |||||||||| | ||| |||||||||| |||| |||||   ||  ||| ||| ||||||| ||||||||| ||||| || | | ||||||||||||| ||    
T  24484616 taaattatatcaatattgtaatgtcaaatttcttgaattggttgaaagcattgcaaaattgaatttgatattgcaagatcaagcgagacgcattcataat 24484715  T
Q  196 catgaaaccaatttgagac 214  Q
     |||||||| || ||||||    
T  24484716 aatgaaaccgatgtgagac 24484734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 31548920 - 31548851
Alignment:
Q  280 tgagacgcgtttagtaatgtaaacttttttggtgttattattcttaggtg--taaattgcagtctacttc 347  Q
    |||||||  ||||||||||| ||||||||| |||||||||||||| ||||   ||||| |||||||||||    
T  31548920 tgagacgaatttagtaatgtcaactttttttgtgttattattctttggtggtaaaatttcagtctacttc 31548851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 25416096 - 25416047
Alignment:
Q  23 aattatattttacttgaaaatgggcct-ttagagaaattaattttaatct 71  Q
    |||||||||||| |||||||||| ||| |||||||||||||| |||||||    
T  25416096 aattatattttagttgaaaatggacctattagagaaattaatcttaatct 25416047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 41509245 - 41509027
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| ||||||||  |||| |||||||||||||| |||||  | | ||| ||||||| ||||||||||||||||||    
T  41509245 attttataactaaacaaattatattttagttgaaaatctgcctattagagaaattaatcttaatggtctttttcaaaggttccaaaaaattaaattatat 41509146  T
Q  106 aattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaacca 205  Q
     || || ||||||||||||||| ||||| | ||| || |||||||||||| |||||||||||| ||||| ||| |||||   |||| ||||||||||||     
T  41509145 cataatagtaatgtcaactttcttgaatta-ttaaaatgattacaaaattgaatttgataatggaaaatcatgcgagacatgttcacgatcatgaaaccg 41509047  T
Q  206 atttgagacgcatttaggat 225  Q
    || |||||||||||||||||    
T  41509046 atatgagacgcatttaggat 41509027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 10373423 - 10373196
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaa-ttaaattata 104  Q
    |||||||||  |||| |||||||||||| |||||||||| |||  |||| |||||||||||||||||||| ||||||| || ||||||| ||||||||||    
T  10373423 attttataataaaacaaattatattttagttgaaaatggacctactagaaaaattaattttaatcttgtcatttaaagcttccaaaaaaattaaattata 10373324  T
Q  105 taattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatc-atgaaac 203  Q
    | |||||  |||||||||||||| |||||  |||  ||||||| ||||||| ||||| |||||||||||| ||| |||||| ||||||||||  ||||||    
T  10373323 tcattataataatgtcaactttcttgaattgatttaaaggattgcaaaattgaatttaataatgcaaaatcatgcgagacgtattcatgatcgttgaaac 10373224  T
Q  204 caatttgagacgcatttaggatcatgtg 231  Q
      || ||||| ||||||||||| |||||    
T  10373223 tgatatgagatgcatttaggataatgtg 10373196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 1843204 - 1843000
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattat 111  Q
    ||||| |||| |||||||||||  ||||||||| |||| |   ||||||||| ||||||||||||||  |||||| ||||||| |||||||||||| |||    
T  1843204 ataacaaaacaaattatatttttgttgaaaatgagcctat---gaaattaatcttaatcttgtctttctaaggttccaaaaaaataaattatataaatat 1843108  T
Q  112 ggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttga 211  Q
     ||||||||||||||| |||||  |||  || || | ||||||| ||| ||||| ||||| || ||| |||||||||||| |||||||||| | || |||    
T  1843107 tgtaatgtcaactttcttgaattgattgaaaagactgcaaaattgaatatgatattgcaagatcatgcgagacgcattcaagatcatgaaatcgatgtga 1843008  T
Q  212 gacgcatt 219  Q
    ||| ||||    
T  1843007 gacacatt 1843000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 10142201 - 10142323
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||||||||||||||| ||  ||||||||||||| |||||||| ||||||||||||| ||||||| ||||||| || | ||    
T  10142201 ataacaaaacaaattatattttacttgaaaatgggtctactagagaaattaatcttaatcttatcttttaaaggttgcaaaaaaataaattacatcaata 10142300  T
Q  111 tggtaatgtcaactttcgtgaat 133  Q
    | ||||||||||||||| |||||    
T  10142301 tagtaatgtcaactttcttgaat 10142323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 9921891 - 9921694
Alignment:
Q  18 aaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaat 117  Q
    |||| |||||||||||| ||||||||| |||| |   ||||||||| ||||||||||||||  |||||||||||| | |||||||||| | ||| |||||    
T  9921891 aaacaaattatattttagttgaaaatgagcctat---gaaattaatcttaatcttgtctttctaaggtttcaaaataataaattatatcaatattgtaat 9921795  T
Q  118 gtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgca 217  Q
    || ||||||  |||||  |||  ||||||| ||||||| ||| ||||| ||||| || ||| |||||  ||||| |||||||||||| || |||||||||    
T  9921794 gtaaacttt-ttgaattgatttaaaggatttcaaaattgaatatgatattgcaagatcatgcgagacatattcaagatcatgaaaccgatgtgagacgca 9921696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 52459074 - 52459276
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggccttt-agagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||| ||||||| ||||||||||||||   |||||||||||  |||||||||||||| |||| || ||||||| |||||||||| | ||    
T  52459074 ataacaaaacaaattctattttagttgaaaatgggcctaccagagaaattaaccttaatcttgtctttcaaagattccaaaaaaataaattatatcaata 52459173  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttg 210  Q
      ||||||||||||||| ||| |  ||   ||||||| || |||| ||||||||||||||| || |||||| || |||| || || ||||||||||| ||    
T  52459174 cagtaatgtcaactttcttgactttatagaaaggattgcagaattgaatttgataatgcaagatcatgtgaaacacatttatcattatgaaaccaatgtg 52459273  T
Q  211 aga 213  Q
    |||    
T  52459274 aga 52459276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 52460331 - 52460533
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggccttt-agagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||| ||||||| ||||||||||||||   |||||||||||  |||||||||||||| |||| || ||||||| |||||||||| | ||    
T  52460331 ataacaaaacaaattctattttagttgaaaatgggcctaccagagaaattaaccttaatcttgtctttcaaagattccaaaaaaataaattatatcaata 52460430  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttg 210  Q
      ||||||||||||||| ||| |  ||   ||||||| || |||| ||||||||||||||| || |||||| || |||| || || ||||||||||| ||    
T  52460431 cagtaatgtcaactttcttgactttatagaaaggattgcagaattgaatttgataatgcaagatcatgtgaaacacatttatcattatgaaaccaatgtg 52460530  T
Q  211 aga 213  Q
    |||    
T  52460531 aga 52460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 21320065 - 21320192
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| |||||||||||| |  |||| |||||||| |||||||| | ||| ||||||| |||||||||||||||||     
T  21320065 attttataacaaaacaaattatattttagttgaaaatgggcttactagataaattaatcttaatcttatttttcaaaggttccaaaaaattaaattatac 21320164  T
Q  106 aattatggtaatgtcaactttcgtgaat 133  Q
     | ||| ||||||||||||||| |||||    
T  21320165 caatatagtaatgtcaactttcttgaat 21320192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 24611397 - 24611216
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||| ||||||| |||||||| |||||  |||| |||||||  |||||||||||||| |||| || ||||||| |||||| ||| | ||    
T  24611397 ataacaaaacaaattctattttagttgaaaattggcctactagaaaaattaaccttaatcttgtctttcaaagattccaaaaaaataaattttattaata 24611298  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcat 192  Q
    | ||| ||||||||||| |||||  |||  | ||||| || |||| |||||||||||| || || |||||| || |||||||    
T  24611297 tagtattgtcaactttcttgaattgattgaagggattgcagaattgaatttgataatggaagatcatgtgacacacattcat 24611216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 25201197 - 25201272
Alignment:
Q  157 aatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgg 232  Q
    ||||||||||||||  || |||||||||||||||||||||||||||   || ||||||| ||||||||||||||||    
T  25201197 aatttgataatgcatgatcatgtgagacgcattcatgatcatgaaaatgatgtgagacgtatttaggatcatgtgg 25201272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 29283017 - 29282952
Alignment:
Q  51 tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaa 116  Q
    ||||||||||||| ||||| |||| ||| ||||||| |||||||||||||||||| ||||||||||    
T  29283017 tagagaaattaatcttaatattgtttttcaaaggttccaaaaaattaaattatatcattatggtaa 29282952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 42512277 - 42512194
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaa 94  Q
    ||||| |||| |||||||||||| |||||||||  |||  || |||||||||| |||||||||||||| |||||||||||||||    
T  42512277 ataacaaaacaaattatattttagttgaaaatgaacctactaaagaaattaatcttaatcttgtctttcaaaggtttcaaaaaa 42512194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 3665406 - 3665324
Alignment:
Q  89 aaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaa 171  Q
    |||||| |||||||||| | ||| ||||||||||||||| |||||  |||  ||||||| ||||||| |||||||||||||||    
T  3665406 aaaaaaataaattatatcaatatagtaatgtcaactttcttgaattgattgaaaggattgcaaaattgaatttgataatgcaa 3665324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 9896460 - 9896383
Alignment:
Q  141 aaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatt 219  Q
    ||||||| ||||||| ||||||||| ||||| || ||| |||||||||||||| |||||||||| || |||||||||||    
T  9896460 aaggattgcaaaattgaatttgatattgcaagat-atgcgagacgcattcatgttcatgaaaccgatgtgagacgcatt 9896383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 25201111 - 25201183
Alignment:
Q  54 agaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaacttt 126  Q
    |||| ||||| |||||||||||||| ||| ||| ||||||| |||||||||| | ||| ||||||||||||||    
T  25201111 agaatttaatcttaatcttgtctttcaaaagttccaaaaaaataaattatatcaatatagtaatgtcaacttt 25201183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 6830723 - 6830670
Alignment:
Q  150 aaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac 203  Q
    |||||| ||||||||||||||| || |||||||||||||| | |||||||||||    
T  6830723 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 6830670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 5509890 - 5509680
Alignment:
Q  23 aattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtca 121  Q
    |||| |||||||  |||||||| ||||  |||| |||||||| |||||||||||||| |||| || |||||| ||||||||||| | ||| |||||||||    
T  5509890 aattctattttagatgaaaatgtgcctactagataaattaatcttaatcttgtctttcaaagattccaaaaatttaaattatatcaatatagtaatgtca 5509791  T
Q  122 actttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcattta 221  Q
    |||||| |||||  |||| || |||| || |||| ||||||||||||||| || ||||||||||||||||| ||||||||||  || ||||||| ||||     
T  5509790 actttcttgaattgattaaaaagattgcagaattgaatttgataatgcaagatcatgtgagacgcattcataatcatgaaactgatgtgagacgtatttg 5509691  T
Q  222 ggatcatgtgg 232  Q
     ||||||||||    
T  5509690 agatcatgtgg 5509680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 24185716 - 24185519
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| ||||||||||| ||  |||  |||||||| |||||||||||||| | | ||| ||||||||||||||||||    
T  24185716 attttataacaaaacaaattatattttagttgaaaatgggtctactagcaaaattaatcttaatcttgtctttcagaagttccaaaaaattaaattatat 24185617  T
Q  106 aattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac 203  Q
     | ||| ||||||| ||||| | ||||| | ||| |||||||  |||||| ||||||||||| |||||| |||| | |||||||||||||||||||||    
T  24185616 caatatagtaatgtaaacttgcttgaattagttaaaaggattgtaaaattgaatttgataatacaaaatcatgtaaaacgcattcatgatcatgaaac 24185519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 47559602 - 47559476
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| || |||||| || |  ||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||    
T  47559602 attttataacaaaacaaattatattttagttaaaaatgtgcttactagagaaattaatcttaatattgtctttcaaag-tttcaaaaaattaaattatat 47559504  T
Q  106 aattatggtaatgtcaactttcgtgaat 133  Q
     | ||| ||||||||||||||| |||||    
T  47559503 caatatagtaatgtcaactttcttgaat 47559476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 5209726 - 5209545
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||| ||||||||   |||  || |||||||||| |||||||||| ||| ||||||||||||||| || |||| || | ||    
T  5209726 ataacaaaacaaattatattttagttgaaaatatacctactaaagaaattaatcttaatcttgtttttcaaaggtttcaaaaaaatatattacatcaata 5209627  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcat 192  Q
    | ||||||||||||||| |||||  |||  ||||||| ||   |  ||||||||||||||| || ||| ||||| |||||||    
T  5209626 tagtaatgtcaactttcttgaattgattgaaaggattgcatggtcgaatttgataatgcaagatcatgcgagacacattcat 5209545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 12027845 - 12028027
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| ||||| |||||| |||||||||| ||| |||||||||||||| ||||| |||||||| ||||| ||||||||| ||||||  ||   ||    
T  12027845 ataacaaaacaaattagattttagttgaaaatggacctattagagaaattaatcttaatattgtctttcaaagg-ttcaaaaaaataaattgcatcgata 12027943  T
Q  111 tggtaatgtcaactttcgtgaataaatt-ataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatg 193  Q
    | |||||| || ||||| | |||  ||| | ||| ||| || | |||||||||||||||||| |||||| ||||| ||||||||    
T  12027944 ttgtaatgccagctttcttcaattgattgaaaagaattgcatagttaaatttgataatgcaagattatgcgagacacattcatg 12028027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 47397528 - 47397450
Alignment:
Q  56 aaattaattttaatcttgtcttttaaaggtttc-aaaaaattaaattatataattatggtaatgtcaactttcgtgaat 133  Q
    |||||||| |||||||||||||| ||||||| | |||||| |||||||||| | ||| ||||||||||||||| |||||    
T  47397528 aaattaatcttaatcttgtctttcaaaggttccaaaaaaaataaattatatcaatatagtaatgtcaactttcttgaat 47397450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 9023271 - 9023365
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    ||||| |||| |||| ||||||| ||||||||| | ||  ||||||||||||    ||||||||||||||||| || ||||||| ||||||||||    
T  9023271 ataacaaaacaaattctattttagttgaaaatgagtctactagagaaattaaccaaaatcttgtcttttaaagattccaaaaaaataaattatat 9023365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 36296751 - 36296788
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct 49  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  36296751 ataaccaaacaaattatattttagttgaaaatgggcct 36296788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 42722286 - 42722323
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct 49  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  42722286 ataaccaaacaaattatattttagttgaaaatgggcct 42722323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 44310547 - 44310647
Alignment:
Q  113 gtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgag 212  Q
    ||||||||||||||| |||||  |||  ||| ||| || |||| ||||||||||||||| || |||||| || ||||||| || || ||||| || ||||    
T  44310547 gtaatgtcaactttcttgaattgattgaaagaattgcataattgaatttgataatgcaagatcatgtgaaacacattcatcattataaaaccgatgtgag 44310646  T
Q  213 a 213  Q
    |    
T  44310647 a 44310647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 40934101 - 40934297
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||| ||||| |||||| ||||  |  | ||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  40934101 attttataacaaaacaaattatgttttagttgaaattgggtatactggagaaattaatcttaatcttgtctttcaaaggttacaaaaaatgaaattatat 40934200  T
Q  106 aattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaa 202  Q
     ||||| ||||||||||||||| | |||  |||| ||  ||| |||||||  ||||||||||||||||||||| |||| ||||| ||||||||||||    
T  40934201 cattatagtaatgtcaactttcttcaattgattaaaaaaatttcaaaattggatttgataatgcaaaattatgcgagatgcatttatgatcatgaaa 40934297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 9420553 - 9420727
Alignment:
Q  51 tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattaca 150  Q
    |||||||| |||| ||||||||||||||||||| || ||||||| |||||||||| | | | ||||||||||||||| |||||  |||| || |||| ||    
T  9420553 tagagaaaataatcttaatcttgtcttttaaagattccaaaaaaataaattatatcaatgtagtaatgtcaactttcttgaattgattaaaaagattgca 9420652  T
Q  151 aaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggat 225  Q
     |||| ||||| ||||||||| || ||| |||| |||||||||||||||||||| || ||||  |||||| ||||    
T  9420653 gaattgaatttaataatgcaagatcatgcgagaggcattcatgatcatgaaaccgatatgaggtgcatttgggat 9420727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 45446117 - 45445899
Alignment:
Q  9 tttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataa 107  Q
    |||||||  |||| |||||||||||| |||||||| |||||  |||||||||||||||||||||| ||||| ||||||| |||||||  ||||||||| |    
T  45446117 tttataagaaaacaaattatattttagttgaaaattggcctactagagaaattaattttaatcttttctttcaaaggttccaaaaaa-aaaattatatca 45446019  T
Q  108 ttatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaat 207  Q
     ||| ||||||| | |||||  |||| ||||| || ||||  | |||| ||||||||||||||| || ||| ||||||      ||||||||||||| ||    
T  45446018 atatagtaatgttagctttctcgaattaattaaaaagattgtagaattgaatttgataatgcaagatcatgcgagacg-----gtgatcatgaaaccgat 45445924  T
Q  208 ttgagacgcatttaggatcatgtgg 232  Q
     ||||||| ||||  ||||||||||    
T  45445923 gtgagacgtatttgagatcatgtgg 45445899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 21863668 - 21863877
Alignment:
Q  23 aattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtca 121  Q
    |||||||||||| |||||||||| ||   ||||||||||||| |||||| |||| || |||| || |||||||| ||||||||| | ||  |||||||||    
T  21863668 aattatattttagttgaaaatggaccaagtagagaaattaatcttaatcatgtccttcaaagattccaaaaaat-aaattatattaataaagtaatgtca 21863766  T
Q  122 actttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcattta 221  Q
    |||||  |||||  |||  || |||| ||||||| ||||||||||| ||| || ||| ||||| ||||| ||| ||||||| | || ||||||||||||     
T  21863767 acttttttgaattgattgaaatgattgcaaaattgaatttgataatccaagatcatgcgagacacattcttgaccatgaaatcgatgtgagacgcatttg 21863866  T
Q  222 ggatcatgtgg 232  Q
    | |||||||||    
T  21863867 gtatcatgtgg 21863877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 28460294 - 28460165
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttc--aaaaaattaaattat 103  Q
    ||||| |||| |||| ||| |||||||| |||||||||||| |  |||| |||||||||||||| |||||||||||||||| |  |||||||||||||||    
T  28460294 attttttaacaaaacaaatgatattttagttgaaaatgggcttactagaaaaattaattttaatattgtcttttaaaggttccaaaaaaaattaaattat 28460195  T
Q  104 ataattatggtaatgtcaactttcgtgaat 133  Q
    || | ||| | ||||||||||||| |||||    
T  28460194 atcaatatagcaatgtcaactttcttgaat 28460165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 39038936 - 39038847
Alignment:
Q  13 taaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaatt 101  Q
    |||| |||| |||||||||||| || |||||||||||  |||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  39038936 taacaaaacaaattatattttagttaaaaatgggcctactagataaattaatcttaatcttgtctgttaaaggtttcaaaaaattaaatt 39038847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 5770939 - 5771141
Alignment:
Q  23 aattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaa 122  Q
    |||||||||||| ||||||||| ||||     ||||||||| ||||||||||||||  ||| || ||||| | |||||||||| | ||| ||||||||||    
T  5770939 aattatattttagttgaaaatgagcctac---gaaattaatattaatcttgtctttctaagtttccaaaagagtaaattatatcaatattgtaatgtcaa 5771035  T
Q  123 ctttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttag 222  Q
     |||| |||||  |||  ||||||| ||||| | |||||  || ||||| || ||| || | |||||||||||||||||||  || ||||| ||||| |     
T  5771036 atttcttgaattgattgaaaggattgcaaaaatgaatttagtattgcaagatcatgcgacatgcattcatgatcatgaaactgatgtgagatgcattcat 5771135  T
Q  223 gatcat 228  Q
    ||||||    
T  5771136 gatcat 5771141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 8604647 - 8604552
Alignment:
Q  8 ttttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaatta 102  Q
    ||||||||| |||  |||||||||||| |||||||| | |||  |||| || ||||| |||||||||||||| ||||||| |||||||||||||||    
T  8604647 ttttataactaaataaattatattttatttgaaaattgacctactagataagttaatcttaatcttgtctttcaaaggttccaaaaaattaaatta 8604552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 35118299 - 35118193
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatat 105  Q
    |||||||||| |||| |||||||||||| ||||||||  ||||  || | |||||||| | ||| |||||||| ||||||| |||||||||||| |||||    
T  35118299 attttataacaaaacaaattatattttagttgaaaataagcctactaaaaaaattaatctgaatgttgtctttcaaaggttccaaaaaattaaactatat 35118200  T
Q  106 aattatg 112  Q
     ||||||    
T  35118199 cattatg 35118193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 39038829 - 39038750
Alignment:
Q  152 aattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtg 231  Q
    |||| ||||||||||||||| || ||| |||||  |||| ||||||||||||  || |||||| ||||||||||||||||    
T  39038829 aattgaatttgataatgcaagatcatgcgagacatattcttgatcatgaaactgatgtgagacacatttaggatcatgtg 39038750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 8069629 - 8069691
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttg 73  Q
    ||||| |||| |||||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  8069629 ataacaaaacaaattatattttagttgaaaatgggcctactagagaaattaatcttaatcttg 8069691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 43179476 - 43179378
Alignment:
Q  7 attttataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattata 104  Q
    |||||||||| |||| |||||||||||| || |||||| | || ||| | |||||||| |||||||| ||||| |||||||   |||||||||||||||    
T  43179476 attttataacaaaacaaattatattttagttaaaaatgagtctattaaaaaaattaatcttaatcttatctttcaaaggttctcaaaaattaaattata 43179378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 48238508 - 48238570
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttg 73  Q
    ||||| |||| |||||||||||| ||||||||||||||  ||||||||| ||| |||||||||    
T  48238508 ataacaaaacaaattatattttagttgaaaatgggcctactagagaaataaatcttaatcttg 48238570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 6189448 - 6189387
Alignment:
Q  13 taaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttg 73  Q
    |||| |||| |||||||||||| |||||||||||| |  ||||||||||||| |||||||||    
T  6189448 taacaaaacaaattatattttagttgaaaatgggcatactagagaaattaatcttaatcttg 6189387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 48636751 - 48636788
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct 49  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  48636751 ataaccaaacaaattatattttagttgaaaatgggcct 48636788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 98385 - 98176
Alignment:
Q  23 aattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtca 121  Q
    |||| ||||||| ||||||||| || |  ||||||||||||| |||||||||||||| |||| || ||||||| |||||||||| | |||  ||||||||    
T  98385 aattctattttagttgaaaatgagcatgctagagaaattaatcttaatcttgtctttcaaagattccaaaaaaataaattatatcaatatattaatgtca 98286  T
Q  122 actttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcattta 221  Q
    | |||| |||||  ||   ||||||| |||| || ||||||||||||||| || ||| ||| | ||||||| || |||||||| || ||||||||||||     
T  98285 aatttcttgaattgatcgaaaggattgcaaatttgaatttgataatgcaagatcatgcgag-cacattcataattatgaaaccgatgtgagacgcatttg 98187  T
Q  222 ggatcatgtgg 232  Q
    |||||||||||    
T  98186 ggatcatgtgg 98176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 18649 - 18424
Alignment:
Q  8 ttttataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatata 106  Q
    ||||||||| |||| |||| ||||||| ||||||||| ||||  |||| || ||||| ||||||| |||||| |||| || ||||||| ||||||||||     
T  18649 ttttataacaaaacaaattttattttagttgaaaatgagcctactagaaaacttaatcttaatctagtctttcaaagattccaaaaaaataaattatatc 18550  T
Q  107 attatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaa 206  Q
    | ||| |||||||||| |||| |||||  |||  | ||||| || | || |||||||||||| || || ||| |||||  |||||| || |||||| | |    
T  18549 aatattgtaatgtcaaatttcttgaattgattcaatggattgcatatttgaatttgataatgaaagatcatgcgagacatattcataattatgaaatcga 18450  T
Q  207 tttgagacgcatttaggatcatgtgg 232  Q
    | |||||||||||| |||||||||||    
T  18449 tgtgagacgcatttgggatcatgtgg 18424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 968 - 1127
Alignment:
Q  73 gtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaa 172  Q
    |||||| |||| || ||||||| |||||||||| | ||| |||||||||| |||| |||||  |||  || |||| |||| || ||||||||||| |||     
T  968 gtctttcaaagattccaaaaaaataaattatatcaatatagtaatgtcaaatttcttgaattgattgaaatgattgcaaatttgaatttgataatacaag 1067  T
Q  173 attatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcatgtgg 232  Q
    || ||| ||||||||||||| || |||||||| || || ||||||||| |||||||||||    
T  1068 atcatgcgagacgcattcataattatgaaaccgatgtgggacgcatttgggatcatgtgg 1127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 1371 - 1592
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||| ||||||| ||||||||| ||||  |||| || ||||| ||||||| |||||| |||| || ||||| | |||||||||| | ||    
T  1371 ataacaaaacaaattctattttagttgaaaatgagcctactagaaaacttaatcttaatctagtctttcaaagattccaaaataataaattatatcaata 1470  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttg 210  Q
    | |||||||||| |||| |||||  |||  | ||||| || | || | ||| ||||||||| || ||| |||||| |||||| || || ||||| || ||    
T  1471 ttgtaatgtcaaatttcttgaattgattcaatggattgcatatttgactttaataatgcaagatcatgcgagacgtattcataattataaaaccgatgtg 1570  T
Q  211 agacgcatttaggatcatgtgg 232  Q
    |||||||||| |||||||||||    
T  1571 agacgcatttgggatcatgtgg 1592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 22524816 - 22524988
Alignment:
Q  56 aaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaatt 155  Q
    |||| ||| ||||||||||||||| |||||| ||||||| |||||||||| ||||| || ||| |||||||| |||||  |||  || ||||  ||||||    
T  22524816 aaatgaatcttaatcttgtctttttaaggttccaaaaaaataaattatatcattattgtgatgacaactttcttgaattgattgaaaagattgtaaaatt 22524915  T
Q  156 aaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttgagacgcatttaggatcat 228  Q
     | ||  | | |||||| |||| |||||| ||||||||||||||||||| || |||||| |||| | ||||||    
T  22524916 gacttcaacattgcaaatttatatgagacacattcatgatcatgaaaccgatgtgagacacattcatgatcat 22524988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 11680903 - 11680721
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataatta 110  Q
    ||||| |||| |||||||||||| |||||||||  |||  |||| |||||||| |||||||| ||||| |||||||||||| || ||||| | || | ||    
T  11680903 ataacaaaacaaattatattttagttgaaaatgaacctactagaaaaattaatcttaatcttatctttcaaaggtttcaaacaaataaatcacatcaata 11680804  T
Q  111 tggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatg 193  Q
    |  |||||||||||||| |||||  |||  ||||||| || | || ||||||||||||||| || |||  |||| ||||||||    
T  11680803 taataatgtcaactttcttgaattgattgaaaggattgcatagttgaatttgataatgcaagatcatgctagacacattcatg 11680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 19108034 - 19108112
Alignment:
Q  55 gaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtcaactttcgtgaat 133  Q
    ||||||||| |||||||| |||||  |||||||||||||| |||||||| | | ||| ||||||||||||||| |||||    
T  19108034 gaaattaatcttaatcttctctttgtaaggtttcaaaaaaataaattatttcaatattgtaatgtcaactttcttgaat 19108112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 15603824 - 15603786
Alignment:
Q  291 tagtaatgtaaacttttttggtgttattattcttaggtg 329  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  15603824 tagtaatgtaaagttttttggtgttattattcttaggtg 15603786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 33516672 - 33516611
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatctt 72  Q
    ||||| |||| |||||||||||| ||||||||||||||  ||||||||||||| ||||||||    
T  33516672 ataacaaaacaaattatattttagttgaaaatgggcctactagagaaattaatcttaatctt 33516611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 26817425 - 26817575
Alignment:
Q  23 aattatattttacttgaaaatgggcctt-tagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaa-attatataattatggtaatgtc 120  Q
    |||| ||||||| |||||||| ||| |  ||||||||||||| |||||||||||||| |||| || |||||||  ||  || ||| | ||| |||||||     
T  26817425 aattctattttagttgaaaataggcatactagagaaattaatcttaatcttgtctttcaaagattccaaaaaacaaattttttatcaatatagtaatgtt 26817524  T
Q  121 aactttcgtgaataaattataaggattacaaaattaaatttgataatgcaa 171  Q
    ||||||| |||||  |||  || |||| || |||| |||||||||||||||    
T  26817525 aactttcttgaattgattgaaatgattgcagaattgaatttgataatgcaa 26817575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 1831209 - 1831268
Alignment:
Q  304 ttttttggtgttattattcttaggtg--taaattgcagtctacttcacagatattattgt 361  Q
    ||||||||||||||||||||||| ||   ||||| ||||||||||| ||||| |||||||    
T  1831209 ttttttggtgttattattcttagatgctaaaatttcagtctacttcgcagatgttattgt 1831268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 11680508 - 11680480
Alignment:
Q  302 acttttttggtgttattattcttaggtgt 330  Q
    |||||||||||||||||||||||||||||    
T  11680508 acttttttggtgttattattcttaggtgt 11680480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 25187 - 25336
Alignment:
Q  23 aattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattatggtaatgtca 121  Q
    ||||| |||||| |||||||| ||| | |||||||| |||||  ||||||||||||| ||||||| || |||| |||||||||| | |||  ||||||||    
T  25187 aattaaattttagttgaaaattggcatattagagaagttaatcctaatcttgtctttcaaaggttccataaaaataaattatatcaatatattaatgtca 25286  T
Q  122 actttcgtgaataaattataaggattacaaaattaaatttgataatgcaa 171  Q
    |||||| ||||   |||  ||||||| || |||| |||||||||| ||||    
T  25287 actttcttgaaatgattgaaaggattgcataattgaatttgataaagcaa 25336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 2475 - 2387
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcct-ttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaa 99  Q
    ||||| |||| |||||||||||| |||||||||  ||| ||| |||||||||| |||||||||||||| |||| || ||||||| ||||    
T  2475 ataacaaaacaaattatattttagttgaaaatgaacctattatagaaattaatcttaatcttgtctttcaaagtttccaaaaaaataaa 2387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 40874 - 41076
Alignment:
Q  12 ataaccaaactaattatattttacttgaaaatgggcctttagagaaattaattttaatcttgtcttttaaaggtttcaaaaaattaaattatataattat 111  Q
    ||||| |||| |||||||||||| ||||||||| | ||  |   |||||||| ||||||||||||||  | ||||  |||| | |||||||||| | |||    
T  40874 ataacaaaacaaattatattttagttgaaaatgaggctaca---aaattaatcttaatcttgtctttctatggttaaaaaatactaaattatatcaatat 40970  T
Q  112 ggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaaccaatttga 211  Q
     |||||||||| |||| |||||   ||  ||| ||| ||||||| ||||||||| ||||| || | |  ||||||||| || || |||||||| || |||    
T  40971 tgtaatgtcaaatttcttgaattggttgaaagcattgcaaaattgaatttgatattgcaagatcaagcaagacgcatttataataatgaaaccgatgtga 41070  T
Q  212 gacgca 217  Q
    ||||||    
T  41071 gacgca 41076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 21402 - 21299
Alignment:
Q  89 aaaaaattaaattatataattatggtaatgtcaactttcgtgaataaattataaggattacaaaattaaatttgataatgcaaaattatgtgagacgcat 188  Q
    ||||||||||||||||| | |||  |||||| ||||||| |||||  |||  ||| |||  | |||| ||||||||||||||| || ||| |||||||||    
T  21402 aaaaaattaaattatatcaatatattaatgtgaactttcttgaattgattgaaagaattgaataattgaatttgataatgcaagatcatgcgagacgcat 21303  T
Q  189 tcat 192  Q
    ||||    
T  21302 tcat 21299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 10224 - 10171
Alignment:
Q  150 aaaattaaatttgataatgcaaaattatgtgagacgcattcatgatcatgaaac 203  Q
    |||||| ||||||||||||||| || |||||||||||||| | |||||| ||||    
T  10224 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcataaaac 10171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University