View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607-Insertion-15 (Length: 375)

Name: NF4607-Insertion-15

Description: NF4607

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4607-Insertion-15

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 136; E-Value: 5e-71

Query Start/End: Original strand, 159 - 375

Target Start/End: Complemental strand, 29142697 - 29142483

Alignment:

Q	159	tctaaacaagtttttagcatggacatatggtaattgtagttcagttaaaaatatattctttattagtagattttttattctagttacgctttatattttc	258	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|
T	29142697	tctaaacaagtttttagcatggacatatgttaattgtagttcagttaaaagtatattctttattagtagattttttattctagttatacttcatattttc	29142598	T

Q	259	ttgataaaaaccctcaaaatcaaaatatttaacggtgaaacacaaaata-tctttaaggaacattcttgtaaacttacataaactaagtttgtgtgaaca	357	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29142597	ttgataacaaccctcaaaattaaaatatttaacggtgaaatccaaaatattcttggcgtaacattctcgtaaacttacataaattaagtttgtgtgaac-	29142499	T

Q	358	atatacttgaacttagtt	375	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29142498	--atacttgaacttagtt	29142483	T

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Target: chr8; HSP #2

Raw Score: 82; E-Value: 1e-38

Query Start/End: Original strand, 10 - 97

Target Start/End: Complemental strand, 29142846 - 29142759

Alignment:

Q	10	tgtgatcatcaataattggcaggttcaacactatcatcataataataatgkgaagtcattgttatcctatctatcaccccatatactt	97	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29142846	tgtgatcaccaataattggcaggttcaacactatcatcataataataatgtgaagtcattgttatcctatctatcaccccatatactt	29142759	T

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