View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607-Insertion-16 (Length: 456)
Name: NF4607-Insertion-16
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607-Insertion-16 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 32592712 - 32592967
Alignment:
| Q |
8 |
caacatgcattgaaggtgtaagagaacaagtagaagaaagaaattaatattgttattcaaaatggaaatgatattagtttcttccgtcagtttgtccact |
107 |
Q |
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| T |
32592712 |
caacatgcattcaaggtgtaagagaacaagtagaagaa-gaaattaatattgttattcaaaatggaaatgatattagtttcttccgtcagtttgtccact |
32592810 |
T |
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| Q |
108 |
agacgaatggattgaatataatagctgcctttatcattatgatgctatgttttaatattattttggcnnnnnnnnnnnnnatgtttgtcactttgtggca |
207 |
Q |
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| T |
32592811 |
agatgaatggattgaatataatagctgcctttatcattatgatgctatgtttttatattattttggcttttttattttttatgtttgtcattttgtggca |
32592910 |
T |
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| Q |
208 |
aaacaatagaatcttcagtaacgtatatatactttttatgtcatgtaaagagtgaca |
264 |
Q |
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| T |
32592911 |
aaacaatagaatcttcattaacgtatatatactttttatgtcatgtaaagagtgaca |
32592967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 32592998 - 32593127
Alignment:
| Q |
272 |
acttattagcaagccatttgggttggtttgatgatgatgatgatttcagtccttgaaagtgtataatttgttctcaaagttttaagtttgattctctaca |
371 |
Q |
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| T |
32592998 |
acttattcccaagccatttgggtttgtttgatgatgatgat---ttcagtccttgaaagtgtat---ttgttctcaaagttttaagttcgattctctaca |
32593091 |
T |
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| Q |
372 |
atgtcaattttaatgggatagtttagtttattagaa |
407 |
Q |
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| T |
32593092 |
atgtcaatttcaatgggatagtttagtttattagaa |
32593127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 32602878 - 32602963
Alignment:
| Q |
49 |
aattaatattgttattcaaaatggaaatgatattagtttcttccgtcagtttgtccactagacgaatggattgaatataatagctg |
134 |
Q |
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| T |
32602878 |
aattaatattgttattcaaaatggaaatgatattttgttcttccgtcagtttgtccactagatgaatgaattgaatataatagctg |
32602963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 32603046 - 32603085
Alignment:
| Q |
225 |
gtaacgtatatatactttttatgtcatgtaaagagtgaca |
264 |
Q |
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| T |
32603046 |
gtaacatatatatactttttatgtgatgtaaagagtgaca |
32603085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 32602995 - 32603029
Alignment:
| Q |
140 |
atcattatgatgctatgttttaatattattttggc |
174 |
Q |
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| T |
32602995 |
atcattatgatgctatgtttttatattattttggc |
32603029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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