View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607-Insertion-2 (Length: 93)

Name: NF4607-Insertion-2
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607-Insertion-2
NF4607-Insertion-2
[»] chr4 (1 HSPs)
chr4 (7-93)||(36059531-36059617)
[»] chr2 (3 HSPs)
chr2 (7-93)||(28862654-28862740)
chr2 (7-93)||(28865503-28865589)
chr2 (31-67)||(28859353-28859389)
[»] chr1 (2 HSPs)
chr1 (15-85)||(15099548-15099618)
chr1 (15-85)||(15110783-15110853)
[»] chr5 (1 HSPs)
chr5 (15-85)||(18616831-18616901)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 36059531 - 36059617
Alignment:
Q  7 acccccaacaaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttgctgttgtg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36059531 acccccaacaaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttgctgttgtg 36059617  T

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Target: chr2 (Bit Score: 59; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 28862740 - 28862654
Alignment:
Q  7 acccccaacaaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttgctgttgtg 93  Q
    |||| ||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  28862740 accctcaacaaaagatttcagaccaaactactagcaggggtgatggtttctggaagggatgttgtgctgctatatgttgctgctgtg 28862654  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 28865503 - 28865589
Alignment:
Q  7 acccccaacaaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttgctgttgtg 93  Q
    |||| ||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  28865503 accctcaacaaaagatttcagaccaaactactagcaggggtgatggtttctggaagggatgttgtgctgctatatgttgctgctgtg 28865589  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 28859353 - 28859389
Alignment:
Q  31 aaaccactagcaggggtgatggtttctggaaaggatg 67  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28859353 aaacaactagcaggggtgatggtttctggaaaggatg 28859389  T

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Target: chr1 (Bit Score: 59; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 15099548 - 15099618
Alignment:
Q  15 caaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttg 85  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  15099548 caaaggattccagaccaaaccactaccagaggtgatggtttctggaagggatgttgtgctgctctatgttg 15099618  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 15110783 - 15110853
Alignment:
Q  15 caaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttg 85  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  15110783 caaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtgctgctctatgttg 15110853  T

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Target: chr5 (Bit Score: 55; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 18616901 - 18616831
Alignment:
Q  15 caaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttg 85  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  18616901 caaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtgctgctctatgttg 18616831  T

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