View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607-Insertion-20 (Length: 701)
Name: NF4607-Insertion-20
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607-Insertion-20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 40662557 - 40662255
Alignment:
| Q |
7 |
acacacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggttcagtcccttttgcatgatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40662557 |
acacacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatttgtggttcagtcccttttgcatgatca |
40662458 |
T |
|
| Q |
107 |
tgaaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcctttgtttcaaagaatct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662457 |
tgaaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattctactttgaatataatgggaataaccgtttctctcctttgtttcaaagaatct |
40662358 |
T |
|
| Q |
207 |
ctgattgattaagaagattgctcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662357 |
ctgattgattaagaagattgctcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtgg |
40662258 |
T |
|
| Q |
307 |
tta |
309 |
Q |
| |
|
||| |
|
|
| T |
40662257 |
tta |
40662255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 415 - 559
Target Start/End: Complemental strand, 40675708 - 40675564
Alignment:
| Q |
415 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40675708 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
40675609 |
T |
|
| Q |
515 |
tggaaattatgcgctctacgtctatgcacagaaggccctccctcc |
559 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40675608 |
tggaaattacgcgctctacgtttatgcacagaaggccctccctcc |
40675564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 415 - 560
Target Start/End: Complemental strand, 40662152 - 40662007
Alignment:
| Q |
415 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40662152 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccagacttgattgttctcctcgttattggtgggttgctgttgacatttctcat |
40662053 |
T |
|
| Q |
515 |
tggaaattatgcgctctacgtctatgcacagaaggccctccctccc |
560 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40662052 |
tggaaattatgcggtctacgtctatgcacagaaggccctccctccc |
40662007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 40675996 - 40675797
Alignment:
| Q |
109 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcctttgtttcaaagaatctct |
208 |
Q |
| |
|
|||||||| ||||||||||| | || ||||||||||| || |||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
40675996 |
aaacaagttttgtgaattgtcgatcatcctgcaaatcagag-attctactttgaatataatgggaaaaaccacttctctcctttgtttcaaagtttctct |
40675898 |
T |
|
| Q |
209 |
gattgattaagaagattgctcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtt |
308 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40675897 |
ggttgattaagaagattgcacttgcacattgcagccattctttatctgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtt |
40675798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 600 - 701
Target Start/End: Complemental strand, 40661967 - 40661866
Alignment:
| Q |
600 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40661967 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
40661868 |
T |
|
| Q |
700 |
gt |
701 |
Q |
| |
|
|| |
|
|
| T |
40661867 |
gt |
40661866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 425 - 559
Target Start/End: Complemental strand, 40656866 - 40656732
Alignment:
| Q |
425 |
gggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcattggaaattat |
524 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
40656866 |
gggaaatatttagaaagctggatctcaagggttcaacccaggcttagtagttctcctggttattggtgggctgctgttgacattcctcattggaaattat |
40656767 |
T |
|
| Q |
525 |
gcgctctacgtctatgcacagaaggccctccctcc |
559 |
Q |
| |
|
||||| || || ||||||||||||||||||||||| |
|
|
| T |
40656766 |
gcgctttatgtttatgcacagaaggccctccctcc |
40656732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 600 - 701
Target Start/End: Complemental strand, 40675523 - 40675422
Alignment:
| Q |
600 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40675523 |
gagaggctgaagcaaggagtctctgcacctggagagtaaaggcattttactcaaatgttctgttgaatgtggattaccttgtactttttaaagaattctg |
40675424 |
T |
|
| Q |
700 |
gt |
701 |
Q |
| |
|
|| |
|
|
| T |
40675423 |
gt |
40675422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 600 - 688
Target Start/End: Complemental strand, 40656691 - 40656603
Alignment:
| Q |
600 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtacttttt |
688 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40656691 |
gagagactgaagcaaggagtctctgcacctggagagtaggggcaatgtactcaaatgttctacggaatgtggattaccttgtacttttt |
40656603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 40676114 - 40676029
Alignment:
| Q |
15 |
taaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggtt--cagtcccttttg |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||| |
|
|
| T |
40676114 |
taaggatcaaagatatgaatacacagaagatgctctagaaagtaaatagtgaaagaatcctgatttatggttcacagtcccttttg |
40676029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University