View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607-Insertion-21 (Length: 972)

Name: NF4607-Insertion-21
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607-Insertion-21
NF4607-Insertion-21
[»] chr7 (3 HSPs)
chr7 (8-972)||(36724460-36725426)
chr7 (40-556)||(716721-717242)
chr7 (55-283)||(711791-712018)
[»] chr8 (1 HSPs)
chr8 (51-461)||(14540018-14540433)
[»] chr5 (6 HSPs)
chr5 (579-895)||(8266464-8266782)
chr5 (703-790)||(29713826-29713912)
chr5 (30-120)||(8267003-8267093)
chr5 (368-416)||(12715536-12715584)
chr5 (368-416)||(12776767-12776815)
chr5 (200-253)||(29984959-29985012)
[»] chr2 (3 HSPs)
chr2 (183-516)||(36473498-36473831)
chr2 (39-97)||(36473917-36473975)
chr2 (374-483)||(29094663-29094772)
[»] chr1 (2 HSPs)
chr1 (460-501)||(12226075-12226116)
chr1 (405-486)||(33314474-33314555)


Alignment Details
Target: chr7 (Bit Score: 795; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 8 - 972
Target Start/End: Original strand, 36724460 - 36725426
Alignment:
8 aaagtctcgttcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggct 107  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36724460 aaagtctcatgcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggct 36724559  T
108 ggctttttccatcgaattatttcctagctgtttagattcggctagtttagggtaacgggagctccatgaccactgcagataatttgagccaatctccaat 207  Q
    ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
36724560 ggcgttttacatcgaattatttcctggctgtttagattcggctagtttagggtaacgggagctccatgaccactgcagataatttgagccgatctccaat 36724659  T
208 cctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcctctatttcataaactccataaaact 307  Q
     |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
36724660 tctcaagaagatgcgttgctcgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcctctctttcataaactccataaaact 36724759  T
308 gtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaattctatcaattttgt 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36724760 gtggtaaagagtttactttggctcgggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaattctatcaattttgt 36724859  T
408 cccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcatcctcataattacttccacatattacacaatcaat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
36724860 cccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatgccatcctcataattacttccacatattacacaatcaat 36724959  T
508 tggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaacaacg--acacacgccaaacaagattttttattttaggtggaactttgagt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||    
36724960 tggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacagcaacgacacacacgccaaacaagattttttattttaggtggaactttgagt 36725059  T
606 ttccaaactagattccaatgatctggtaaatgcaaatgggtgttattagcaatttcattaacacatattctataggcactctgcaccgagtacttgccat 705  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||    
36725060 ttccaaactagattccaatgatccagtaaatgcaaataggtgttattagcaatttcattaacacatattctataggcacactgcactgagtactttccat 36725159  T
706 tcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtattcaagatcagctggaccgtgttttgatnnnnnnngattataa 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
36725160 tcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtattcaagatcagctggaccgtgttttgat-aaaaaagattataa 36725258  T
806 attaaaggagaattccataccttggaggattgatcaagaatatcctttaccttcatatgagctaaagacgcgtaaataagactatcagttgtnnnnnnnn 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||            
36725259 attaaaggagaattccataccttggaggattgatcaagaatatcctttaccttcacatgagctaaagacgcgtaaataagactatcagttgt-agaaaaa 36725357  T
906 cattccctcatttagccatgacatgccaaacaacgggatattcaca-ctctt-ctattctccatctcgc 972  Q
    ||| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
36725358 catcccatcatttagccatgacatgccaaacaacgggatattcacacctcttcctattctccatctcgc 36725426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 40 - 556
Target Start/End: Complemental strand, 717242 - 716721
Alignment:
40 caattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtt 139  Q
    ||||||| || ||||||||||| ||||||||||||||||| |||  ||| |||||||||  ||| | ||| ||||||||  ||  | ||||||| ||| |    
717242 caattcccaccttgttcatagccgaagaaaatgaggcatcgataaagcacttgtaacggctgagtgttggatttttccactgatctgtttcctaactgct 717143  T
140 tagattcggctagtttagggtaacgggagctccatgaccac-tgcagataatttgagccaatctccaatcctc-aagaagatgcgttacacgttcaacca 237  Q
    ||||| || || ||||  | ||||  | |||||  |||||| || | |||||||||||  |||||||||| || |||||| || | | | ||||||||||    
717142 tagatccgactggtttctgttaacaagcgctccgcgaccacctgga-ataatttgagctgatctccaatcttccaagaaggtgtgatgctcgttcaacca 717044  T
238 cctgcatatttgtttcgttcctttgctggcaaagtttcaagttcct-ctatttcataaactccataaaactgtggtaaagagtttactttggctcaggct 336  Q
    ||||||| |||||||| ||| |||||   ||||||||||||||||| || || |||||||||||||||| ||| | |||||||| ||||||||||  ||     
717043 cctgcatgtttgtttcattcttttgccaccaaagtttcaagttccttctcttccataaactccataaaaatgttgcaaagagttcactttggctcgagcc 716944  T
337 aagctggtgtaaaagggtaaagacaaccacgtccatattataattttggcgtagaatt---ctatcaattttgtcccataaatacacatcatgccaaacc 433  Q
    ||||||||| | |||||||||||| ||||| || ||||||||||||| ||| ||||||   ||| |||||||||||||||||| |||||||  |||||||    
716943 aagctggtgcagaagggtaaagaccaccacatctatattataattttcgcgaagaattatactaccaattttgtcccataaattcacatcactccaaacc 716844  T
434 tgcacaacattaggacactcgagaagaacatgaatatcatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactactta 533  Q
      |||||||||||||||||||||||||||||||||    ||||||||||||||| |||| ||||||||||| ||||||||||||||| || ||||| |||    
716843 aacacaacattaggacactcgagaagaacatgaatgatttcctcataattactttcacacattacacaatctattggacaatgaacctatctactaatta 716744  T
534 ggcgtgctcatgtatgaaaacaa 556  Q
    || ||||||||||  ||||||||    
716743 ggtgtgctcatgttggaaaacaa 716721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 55 - 283
Target Start/End: Complemental strand, 712018 - 711791
Alignment:
55 tcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtt 154  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||   ||| | ||||||||||||  ||| ||||||||| || ||| ||| |   | |||    
712018 tcatagctgaagaaaatgagg-atcactattgcacttgtaacgtctgagtgttggctttttccacggaactatttcctaactattttgatccaattggtt 711920  T
155 tagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcg 254  Q
    |  | ||||||| |||||| |||  |  |||||||||||| ||  | || ||||||| ||||| ||| || | ||||||||||||||||| |||||||||    
711919 tctgttaacgggtgctccacgactgcctcagataatttgacccggtatctaatcctcgagaaggtgcattgctcgttcaaccacctgcatgtttgtttcg 711820  T
255 ttcctttgctggcaaagtttcaagttcct 283  Q
    ||| ||||||| ||| |||||||||||||    
711819 ttcttttgctgccaaggtttcaagttcct 711791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 51 - 461
Target Start/End: Complemental strand, 14540433 - 14540018
Alignment:
51 ttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggct 150  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| |   ||| |||||||||| ||| | || | || |||  ||||||||||  || |    
14540433 ttgttcatatatgaagaaaatgaggcatcgatattgcatttgtaatgcctgagtgctggcttttcccacccaactgttacctgactgtttagatctggtt 14540334  T
151 agtttagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgt 250  Q
     |||   | | ||||  | |||  |||||| | | |||||||||||| ||||||||||||||||||| || ||| | |||||| |||||||| |||||||    
14540333 ggttcctgatgacggacgttccgcgaccaccgaaaataatttgagccgatctccaatcctcaagaaggtgtgttgctcgttcacccacctgcgtatttgt 14540234  T
251 ttcgttcctttgctggcaaagtttcaagttcct-ctatttcataaactccataaaactgtggtaaagagttt---actttggctcaggctaagctggtgt 346  Q
    || |||| ||||||| ||||||||| ||||  | |  || |||||||||||||||||| ||| ||||||||    ||||| |||||| ||||||||||||    
14540233 tttgttcttttgctgccaaagtttccagttatttcccttccataaactccataaaactatggcaaagagttgttcacttttgctcagactaagctggtgt 14540134  T
347 aaaagggtaaagacaaccacgtccatattataattttggcgtagaattctatcaa-ttttgtcccataaatacacatcatgccaaacctgcacaacatta 445  Q
    | |||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||| |||| || || || |||||||||||||| ||||| ||||    
14540133 agaagggtaaagaccaccacgtccatattataattttgacgaagaattctatcaatttttttcccgtagattcatatcatgccaaacctacacaatatta 14540034  T
446 ggacactcgagaagaa 461  Q
    ||||||||||||||||    
14540033 ggacactcgagaagaa 14540018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 4e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 579 - 895
Target Start/End: Complemental strand, 8266782 - 8266464
Alignment:
579 ttttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaatgggtgttattagcaatttcattaacacatattctat 678  Q
    |||||||| |||||| | ||||||||||||||||||| ||| ||| ||  ||||| ||||||||| |  ||||||||||||||| | |||||||||||||    
8266782 ttttttatcttaggtaggactttgagtttccaaactaaatttcaacgacatggtatatgcaaatgagaattattagcaatttcacttacacatattctat 8266683  T
679 aggcactctgcaccgagtacttgccattcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtattcaagatcagctgga 778  Q
    |||||||   |||||| || || |||||||||| ||| |||||||||||||||||| |||| ||||| || ||||||| | |||||||| ||||| |||     
8266682 aggcactacacaccgaatagttaccattctttt-cagccttccaaatcaacttatcttcattaaccagagattgtaaatgtgtattcaaaatcagttggg 8266584  T
779 ccgtgttttgatnnnnnnngattataaattaaaggagaattccataccttggaggattgatcaagaatatc--cttt-accttcatatgagctaaagacg 875  Q
      || |||||||       |||| ||||||||| ||| |||||||||| |||||||||| | ||| |||||  |||| ||||||| |||||| ||||| |    
8266583 aagtattttgataaaaaaagattgtaaattaaatgagcattccataccctggaggattgtttaaggatatcatctttcaccttcacatgagcgaaagatg 8266484  T
876 cgtaaataagactatcagtt 895  Q
    |||||||| | |||||||||    
8266483 cgtaaatagggctatcagtt 8266464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 703 - 790
Target Start/End: Complemental strand, 29713912 - 29713826
Alignment:
703 cattcttttccagtcttccaaatcaacttatcctcatcaaccaaaggttgtaaaggagtattcaagatcagctggaccgtgttttgat 790  Q
    |||||||||| || |||||||||||||||||| || |||||||||  |||||||||||||||||| || |||||  ||||||| ||||    
29713912 cattcttttc-agccttccaaatcaacttatcttcctcaaccaaattttgtaaaggagtattcaatataagctgagccgtgttatgat 29713826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 8267093 - 8267003
Alignment:
30 atacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatc 120  Q
    ||||||||  ||||||||||| |||||   | ||||||||| || |||||||||||||||||||||||||||   |||||||||| |||||    
8267093 atacacatcccaattcctactatgttcggggatgaagaaaacgaagcatcaatattgcatttgtaacggtcggttgctggcttttcccatc 8267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 12715536 - 12715584
Alignment:
368 tccatattataattttggcgtagaattctatcaattttgtcccataaat 416  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
12715536 tccatattataatttttgcgaagagttctatcaattgtgtcccataaat 12715584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 12776767 - 12776815
Alignment:
368 tccatattataattttggcgtagaattctatcaattttgtcccataaat 416  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
12776767 tccatattataatttttgcgaagagttctatcaattgtgtcccataaat 12776815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 29985012 - 29984959
Alignment:
200 tctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttc 253  Q
    |||||| || ||||||||||| ||  |||||||||| |||||||||||||||||    
29985012 tctccattcatcaagaagatgtgtagcacgttcaacaacctgcatatttgtttc 29984959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 183 - 516
Target Start/End: Complemental strand, 36473831 - 36473498
Alignment:
183 cagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcc 282  Q
    ||||||||||||||| || |  |||| | ||||| ||| ||| | |||||||||||||||||||| ||||| ||| |||| || ||||| ||||| |||     
36473831 cagataatttgagccgattttaaatctttaagaaaatgtgttgctcgttcaaccacctgcatattcgtttcattcttttgttgccaaagcttcaaattca 36473732  T
283 t-ctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataatt 381  Q
    | || ||||| ||||||||||||||  | | ||| |||| |||||||||     |||| || || || || | ||| |  ||| | ||||||||||||||    
36473731 ttctctttcaaaaactccataaaacactagcaaaaagttcactttggctagcagtaagttgttgcaagagagaaaa-atgaccgcatccatattataatt 36473633  T
382 ttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcatcctcataa 481  Q
    |||| | || | |||||||||  | ||||| ||||  |||||| ||||||||||||||||||||||||| || | ||  |||||||||  ||||||||||    
36473632 ttggtgaagtactctatcaatactttcccacaaatttacatcacgccaaacctgcacaacattaggacattccaaaaacacatgaatactatcctcataa 36473533  T
482 ttacttccacatattacacaatcaattggacaatg 516  Q
    ||||| | |||||| |||||||   ||||||||||    
36473532 ttactacgacatatgacacaatatgttggacaatg 36473498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 36473975 - 36473917
Alignment:
39 tcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacg 97  Q
    |||||||||||||||||||||| |||||| || ||||||||||| ||||||||| ||||    
36473975 tcaattcctactttgttcatagatgaagagaacgaggcatcaatgttgcatttgcaacg 36473917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 483
Target Start/End: Original strand, 29094663 - 29094772
Alignment:
374 ttataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcat 473  Q
    |||||||||||||| | ||  ||||  |||||||||||||||| ||||||||||||  |||| ||||| |||| ||| || | |||||| |||||||  |    
29094663 ttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttagaacattcaataagaacgtgaatattgt 29094762  T
474 cctcataatt 483  Q
    | ||||||||    
29094763 cttcataatt 29094772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 501
Target Start/End: Complemental strand, 12226116 - 12226075
Alignment:
460 aacatgaatatcatcctcataattacttccacatattacaca 501  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||    
12226116 aacatgaatgtcatcctcataattatttccacaaattacaca 12226075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 486
Target Start/End: Complemental strand, 33314555 - 33314474
Alignment:
405 tgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcatcctcataattact 486  Q
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33314555 tgtcccacatattcacattacgccacacctgaacaactttaggacattctacaagaacatgaatactatcctcataattact 33314474  T

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