View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607-Insertion-3 (Length: 1150)
Name: NF4607-Insertion-3
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607-Insertion-3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 832; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 8 - 867
Target Start/End: Original strand, 7766622 - 7767481
Alignment:
| Q |
8 |
cttctcttgttgtttaaacaaaacctatcaaatttttcactcaataaattcatctcttcaaaaccctaaccctaaccttctgattctttgaactaaatct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7766622 |
cttctcttgttgtttaaacaaaacctatcaaatttttcactcaataaattcatctcttcaaaaccctaaccctaaccttccgattctttgaactaaatct |
7766721 |
T |
|
| Q |
108 |
tctaaaacctatcaaaacctcttcgaaaccctaaccttctcattctttttcatcaaaaagatacttcctttcaattatctcctttgaaaccgttaacaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7766722 |
tctaaaacctatcaaaacctcttcgaaaccctaaccttctcattctttttcatcaaaaggatacttcctttcaattatctcctttgaaaccgttaacaga |
7766821 |
T |
|
| Q |
208 |
ggagatgattaacggaggtgatcagccggaggggttgaatcttgatgagtgtcggccaagtacttcatcgccggtaggatggataccggctggacttgcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7766822 |
ggagatgattaacggaggtgatcagccggaggggttgaatcttgatgagtgtcggccaagtatttcatcgccggtaggatggataccggctggacttgcc |
7766921 |
T |
|
| Q |
308 |
aaccttggtaacacatgctttctcaattcgatcatgcaatgcttcattcatacggtgcctctagtcgaaggtctttttacgtgcagccatgcttctaatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7766922 |
aaccttggtaacacatgctttctcaattcgatcatgcaatgcttcattcatacggtgcctctagtcgaaggtctttttacgtgcagccatgcttctaatg |
7767021 |
T |
|
| Q |
408 |
atggtcacaatggatactgtgttatctgctctttccactaccagatgcaactttccttgcgttatactggaagagttatctcccctatgatcattgtgga |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7767022 |
atggtcacaatggatactgtgttatctgctctttccactaccagatgcaactttccttgcgttatactggaagagttatctcccctaagatcattgtgga |
7767121 |
T |
|
| Q |
508 |
aaatttgaatcatttttcttcgatgtttcgaagatatcaacaagaggatgcccatgagtttatgcaatgtgtattggataaacttgattcaagtttttta |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7767122 |
aaatttgaatcatttttcttcgatgtttcgaagatatcaacaagaggatgcccatgagtttatgcaatgtgtattggataaacttgattcatgtttttta |
7767221 |
T |
|
| Q |
608 |
gatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767222 |
gatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtc |
7767321 |
T |
|
| Q |
708 |
gctcttctgacactaatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaaga |
807 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767322 |
gctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaaga |
7767421 |
T |
|
| Q |
808 |
tattgatgtgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
867 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767422 |
tattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
7767481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 192 - 864
Target Start/End: Original strand, 7772941 - 7773613
Alignment:
| Q |
192 |
tgaaaccgttaacagaggagatgattaacggaggtgatcagccggaggggttgaatcttgatgagtgtcggccaagtacttcatcgccggtaggatggat |
291 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||| ||||||||||||| || |||| ||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
7772941 |
tgaaacagttaacagaggagaggattaacagaggcgatcagccggaggcgtctgatctcgatgagtgtcggccaagtatttcatcgcgggtaggatggat |
7773040 |
T |
|
| Q |
292 |
accggctggacttgccaaccttggtaacacatgctttctcaattcgatcatgcaatgcttcattcatacggtgcctctagtcgaaggtctttttacgtgc |
391 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
7773041 |
accggctggacttgctaaccttggtaacacatgctttctcaattcaatcatgcaatgcttcaatcatacagtgcctctagtcgaaggtcttttttcgtgc |
7773140 |
T |
|
| Q |
392 |
agccatgcttctaatgatggtcacaatggatactgtgttatctgctctttccactaccagatgcaactttccttgcgttatactggaagagttatctccc |
491 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7773141 |
agccatgcttgtaatgatggtcacaatggatattgtgttatctgcgctttccgctaccagatgcaacgttccttgcgttatactggaagagttatctccc |
7773240 |
T |
|
| Q |
492 |
ctatgatcattgtggaaaatttgaatcatttttcttcgatgtttcgaagatatcaacaagaggatgcccatgagtttatgcaatgtgtattggataaact |
591 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
7773241 |
ctatgatcattgtggaaaatttgaatcacttttcttcgatgtttcgaagatatctacaagaggatgctcatgagtttatgcaatgtgtatttgataaact |
7773340 |
T |
|
| Q |
592 |
tgattcaagttttttagatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagtttttggaggcagtttggttagcaggcttcgg |
691 |
Q |
| |
|
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7773341 |
tgatttatgttttttagatttgaagaataatgatccaaaatttgagggcgataatattgtaaagaaagtttttggaggtagtttggttagcatgcttcgg |
7773440 |
T |
|
| Q |
692 |
tgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctt |
791 |
Q |
| |
|
||||| ||||||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
7773441 |
tgttgtaactgtggttgttcttctgacattaatgagccattgattgattttagtctagaaatagaaaatgtagatactctttcaagtgctttagaatctt |
7773540 |
T |
|
| Q |
792 |
tcactacggtggaagatattgatgtgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaaca |
864 |
Q |
| |
|
|||||| ||||||| | ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7773541 |
tcactatggtggaacacattgacgcgaagtttaaatgcgagggctgcaacgaagaagtgtctatggagaaaca |
7773613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 171 - 867
Target Start/End: Original strand, 7777737 - 7778451
Alignment:
| Q |
171 |
cttcctttcaattatctcctttgaaaccgttaacagaggagatgattaacggaggtgatcagccggaggggttgaatcttgatgagtgtcggccaagtac |
270 |
Q |
| |
|
||||| |||||| |||||| |||||||||||| |||||||| |||||||| ||||||||| | ||||| |||| |||| ||||| ||||| ||||||| |
|
|
| T |
7777737 |
cttccattcaatcctctcctctgaaaccgttaatagaggagaggattaacgaaggtgatcaactggaggcgttggatctcgatgattgtcgtccaagtat |
7777836 |
T |
|
| Q |
271 |
ttcatcgccggt------------------aggatggataccggctggacttgccaaccttggtaacacatgctttctcaattcgatcatgcaatgcttc |
352 |
Q |
| |
|
||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7777837 |
ttcctcgcgggttttacccgtgcagccggaaggatggataccggctggactcgccaaccttggtaacacatgctttctcaattcgatcatgcaatgcttc |
7777936 |
T |
|
| Q |
353 |
attcatacggtgcctctagtcgaaggtctttttacgtgcagccatgcttctaatgatggtcacaatggatactgtgttatctgctctttccactaccaga |
452 |
Q |
| |
|
| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
7777937 |
actcatacagtgcctctagtcgaaggtcttttttcgtgcagccatgcttgtaatgatggtcacaatggatattgtgttatctgcgctttccgctaccaga |
7778036 |
T |
|
| Q |
453 |
tgcaactttccttgcgttatactggaagagttatctcccctatgatcattgtggaaaatttgaatcatttttcttcgatgtttcgaagatatcaacaaga |
552 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
7778037 |
tgcaacgttccttgcgttatactggaagagttatctcccctatgatcattgtggaaaatttgaatcacttttcttcgatgtttcgaagatatcggcaaga |
7778136 |
T |
|
| Q |
553 |
ggatgcccatgagtttatgcaatgtgtattggataaacttgattcaagttttttagatttgaagaagaatgatccaaaatttgagggcgataatatcgta |
652 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
7778137 |
ggatgcacatgagtttatgcaatgtgtattggataaacttgattcatgttttttagaattgaagaaaaacgatccaaaatttgagggcgataatattgta |
7778236 |
T |
|
| Q |
653 |
aagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctagaaa |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7778237 |
aagaaagtttttggaggcagtttggttagcaggcttcggtgttgtaactgtggtcgatcttccgacactaatgagccatcgattgatttgagtctagaaa |
7778336 |
T |
|
| Q |
753 |
tagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgtgaagtttaaatgcgagggctgcaacgaagaagtttc |
852 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
7778337 |
tagaaaatgcagatactctttcaagtgctttagattctttcacaacggtagaagatattgatgcaaagtttaaatgtgagggctgcaatgaagaagtttc |
7778436 |
T |
|
| Q |
853 |
tatggagaaacagct |
867 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7778437 |
tatggagaaacagct |
7778451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 7777575 - 7777679
Alignment:
| Q |
171 |
cttcctttcaattatctcctttgaaaccgttaacagaggagatgattaacggaggtgatcagccggaggggttgaatcttgatgagtgtcggccaagtac |
270 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||||| |||||| ||||||||||| || |||| |||| || | |||||||||| ||||||| |
|
|
| T |
7777575 |
cttccgttcaatcctctcctttgaaacctttaacagaggagaggattaatggaggtgatcatcctgaggcgttggatttcgatgagtgtcatccaagtat |
7777674 |
T |
|
| Q |
271 |
ttcat |
275 |
Q |
| |
|
||||| |
|
|
| T |
7777675 |
ttcat |
7777679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 7777355 - 7777389
Alignment:
| Q |
124 |
acctcttcgaaaccctaaccttctcattctttttc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7777355 |
acctcttcgaaaccctaaccttctcattctttttc |
7777389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 950
Target Start/End: Original strand, 7767513 - 7767597
Alignment:
| Q |
872 |
ttccacttgaagaggttt-agacagatggggtttttgt--gaaaga-tgac-agcatatcgatttccagatgcaa-tggacatgc |
950 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
7767513 |
ttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgc |
7767597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 950
Target Start/End: Original strand, 7773648 - 7773732
Alignment:
| Q |
872 |
ttccacttgaagaggttt-agacagatggggtttttgt--gaaaga-tgac-agcatatcgatttccagatgcaa-tggacatgc |
950 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
7773648 |
ttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgc |
7773732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 7777316 - 7777374
Alignment:
| Q |
20 |
tttaaacaaaacctatcaaatttttcactcaataaattcatctcttcaaaaccctaacc |
78 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || || |||| |||||| ||||||||||| |
|
|
| T |
7777316 |
tttaaataaaacctatcaaaattttcacttaagaatttcacctcttcgaaaccctaacc |
7777374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 685 - 867
Target Start/End: Complemental strand, 12753863 - 12753681
Alignment:
| Q |
685 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
784 |
Q |
| |
|
|||||||||||| |||||| | |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
12753863 |
gcttcggtgttgtaactgtagccgctcttccatcactaatgagccgttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattg |
12753764 |
T |
|
| Q |
785 |
gattctttcactacggtggaagatattgatgtgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
867 |
Q |
| |
|
|| |||||||| | ||||||| | ||||||| ||| ||||||| ||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
12753763 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagct |
12753681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 685 - 867
Target Start/End: Complemental strand, 12816823 - 12816641
Alignment:
| Q |
685 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
784 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
12816823 |
gcttcggtgttgtaactgtagccgctcttccatcactaatgagcagttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattg |
12816724 |
T |
|
| Q |
785 |
gattctttcactacggtggaagatattgatgtgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
867 |
Q |
| |
|
|| |||||||| | ||||||| | ||||||| ||| ||||||| ||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
12816723 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagct |
12816641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 12754788 - 12754672
Alignment:
| Q |
296 |
gctggacttgccaaccttggtaacacatgctttctcaattcgatcatgcaatgcttcattcatacggtgcctctagtcgaaggtctttttacgtgcagcc |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||| ||||| || |||||| || | || ||| |
|
|
| T |
12754788 |
gctgggcttgccaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttttgagctgcc |
12754689 |
T |
|
| Q |
396 |
atgcttctaatgatggt |
412 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
12754688 |
attctcctaatgatggt |
12754672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 12817750 - 12817634
Alignment:
| Q |
296 |
gctggacttgccaaccttggtaacacatgctttctcaattcgatcatgcaatgcttcattcatacggtgcctctagtcgaaggtctttttacgtgcagcc |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||| ||||| || |||||| || | || ||| |
|
|
| T |
12817750 |
gctgggcttgccaaccttggtaacacatgctttctcaattcaattatgcaatgcttcacgcataccgtgcccctagttgagggtcttcttttgagctgcc |
12817651 |
T |
|
| Q |
396 |
atgcttctaatgatggt |
412 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
12817650 |
attctcctaatgatggt |
12817634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 537 - 594
Target Start/End: Complemental strand, 12754080 - 12754023
Alignment:
| Q |
537 |
gaagatatcaacaagaggatgcccatgagtttatgcaatgtgtattggataaacttga |
594 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
12754080 |
gaagacatcagcaagaggatgcacatgagtttatgcagtgtgcattggataaacttga |
12754023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 537 - 594
Target Start/End: Complemental strand, 12817040 - 12816983
Alignment:
| Q |
537 |
gaagatatcaacaagaggatgcccatgagtttatgcaatgtgtattggataaacttga |
594 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
12817040 |
gaagacatcagcaagaggatgcacatgagtttatgcagtgtgcattggataaacttga |
12816983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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