View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607-Insertion-5 (Length: 257)

Name: NF4607-Insertion-5
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607-Insertion-5
NF4607-Insertion-5
[»] chr5 (11 HSPs)
chr5 (8-257)||(258685-258936)
chr5 (67-116)||(30366678-30366728)
chr5 (58-89)||(20811511-20811542)
chr5 (58-89)||(20837866-20837897)
chr5 (59-103)||(12965247-12965292)
chr5 (58-98)||(27760132-27760173)
chr5 (58-106)||(39205662-39205711)
chr5 (62-105)||(1892089-1892133)
chr5 (60-111)||(15844518-15844570)
chr5 (58-90)||(33040120-33040152)
chr5 (58-90)||(33040527-33040559)
[»] chr3 (12 HSPs)
chr3 (58-103)||(31564004-31564050)
chr3 (65-103)||(41380787-41380826)
chr3 (58-103)||(22407442-22407488)
chr3 (58-103)||(22407649-22407695)
chr3 (58-103)||(44573696-44573742)
chr3 (58-103)||(44573993-44574039)
chr3 (59-103)||(3985831-3985876)
chr3 (58-90)||(10453718-10453750)
chr3 (58-90)||(14170014-14170046)
chr3 (58-90)||(27219386-27219418)
chr3 (58-90)||(34715470-34715502)
chr3 (58-90)||(38300298-38300330)
[»] chr2 (18 HSPs)
chr2 (67-116)||(11339678-11339727)
chr2 (58-106)||(11969109-11969158)
chr2 (57-103)||(93139-93186)
chr2 (58-116)||(33456018-33456077)
chr2 (58-103)||(884114-884160)
chr2 (67-116)||(3008425-3008475)
chr2 (58-103)||(3976472-3976518)
chr2 (58-103)||(21214202-21214248)
chr2 (58-103)||(42768335-42768381)
chr2 (58-103)||(43195841-43195887)
chr2 (59-103)||(901981-902026)
chr2 (57-90)||(25441752-25441785)
chr2 (67-116)||(4493129-4493180)
chr2 (68-103)||(14408056-14408092)
chr2 (58-90)||(19860094-19860126)
chr2 (58-90)||(21213900-21213932)
chr2 (60-103)||(25286261-25286305)
chr2 (58-90)||(30156265-30156297)
[»] chr1 (17 HSPs)
chr1 (58-106)||(2104258-2104307)
chr1 (59-105)||(36332170-36332217)
chr1 (58-103)||(19481393-19481439)
chr1 (58-103)||(20735579-20735625)
chr1 (59-103)||(463084-463129)
chr1 (59-103)||(11149424-11149469)
chr1 (67-111)||(19609178-19609223)
chr1 (67-111)||(19809951-19809996)
chr1 (58-102)||(38474340-38474385)
chr1 (58-90)||(2697346-2697378)
chr1 (58-90)||(17419844-17419876)
chr1 (58-90)||(19937058-19937090)
chr1 (58-90)||(20735812-20735844)
chr1 (58-90)||(31305768-31305800)
chr1 (58-90)||(35024475-35024507)
chr1 (58-90)||(36326963-36326995)
chr1 (58-90)||(45264719-45264751)
[»] chr8 (10 HSPs)
chr8 (57-116)||(30966070-30966130)
chr8 (57-111)||(45031369-45031424)
chr8 (58-103)||(18905913-18905959)
chr8 (58-103)||(21653861-21653907)
chr8 (58-103)||(32931458-32931504)
chr8 (58-103)||(34248134-34248180)
chr8 (58-103)||(34248416-34248462)
chr8 (58-103)||(36997223-36997269)
chr8 (58-102)||(36993949-36993994)
chr8 (67-111)||(45031160-45031205)
[»] chr4 (20 HSPs)
chr4 (67-105)||(48046423-48046462)
chr4 (58-103)||(21497684-21497730)
chr4 (58-103)||(21498244-21498290)
chr4 (58-103)||(29669364-29669410)
chr4 (58-103)||(35399258-35399304)
chr4 (58-103)||(35399417-35399463)
chr4 (58-103)||(43972412-43972458)
chr4 (58-103)||(45427253-45427299)
chr4 (58-103)||(52214672-52214718)
chr4 (58-103)||(53740239-53740285)
chr4 (58-102)||(15665210-15665255)
chr4 (59-103)||(36558467-36558512)
chr4 (59-103)||(41176764-41176809)
chr4 (58-106)||(52827230-52827279)
chr4 (58-90)||(991261-991293)
chr4 (58-90)||(18435941-18435973)
chr4 (58-90)||(27048423-27048455)
chr4 (58-90)||(28085751-28085783)
chr4 (58-90)||(29669693-29669725)
chr4 (58-90)||(29734618-29734650)
[»] chr7 (7 HSPs)
chr7 (58-103)||(1661192-1661238)
chr7 (58-103)||(1663605-1663651)
chr7 (58-103)||(7135244-7135290)
chr7 (58-103)||(43384281-43384327)
chr7 (58-90)||(28910089-28910121)
chr7 (58-90)||(37272060-37272092)
chr7 (58-90)||(43288589-43288621)
[»] chr6 (6 HSPs)
chr6 (58-103)||(1744843-1744889)
chr6 (58-103)||(8144074-8144120)
chr6 (58-103)||(10418339-10418385)
chr6 (58-103)||(24055110-24055156)
chr6 (60-103)||(10733439-10733483)
chr6 (58-90)||(19054550-19054582)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 258936 - 258685
Alignment:
Q  8 gttaagattgttaaaagttccacaatggatgagatatggtctgagttatgggcactccacaccttacaagccggttttgtaagttgagttaggcccaaac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  258936 gttaagattgttaaaagttccacaatggatgagatatggtctgagttaggggcactccacaccttacaagccggttttgtaagttgagttaggcccaaac 258837  T
Q  108 caaactctatgaaggatcacatcattgattggtggacagtgcatcaaaagttattgataatatttgaccaacaacttaattggac--nnnnnnnncttcc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  258836 caaactctatgaaggatcacatcattgattggtggacagtgcatcaaaagttattgataatatttgaccaacaacttaattggacatttttttttcttcc 258737  T
Q  206 aggtgccaacacccgagtgaaaactggttgtgtttatcatgtaaggacgtgc 257  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  258736 aggtgccaacacccgagtgaaaactggttgtgtttatcgtgtaaggacgtgc 258685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 30366678 - 30366728
Alignment:
Q  67 caccttacaagccggttttgtaag-ttgagttaggcccaaaccaaactcta 116  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  30366678 caccttacaagccggctttgtaaggttgagttaggcccaaaccaaattcta 30366728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 20811511 - 20811542
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa 89  Q
    ||||||||||||||||||||||||||||||||    
T  20811511 ggcactccacaccttacaagccggttttgtaa 20811542  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 20837866 - 20837897
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa 89  Q
    ||||||||||||||||||||||||||||||||    
T  20837866 ggcactccacaccttacaagccggttttgtaa 20837897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 12965292 - 12965247
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  12965292 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 12965247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 27760132 - 27760173
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagtta 98  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  27760132 ggcactcctcaccttacaagccggttttgtaaggttgagtta 27760173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 39205711 - 39205662
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcccaaa 106  Q
    |||||||| ||||||| ||||||||||||||| | |||||||||||||||    
T  39205711 ggcactcctcaccttaaaagccggttttgtaaggatgagttaggcccaaa 39205662  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 1892133 - 1892089
Alignment:
Q  62 ctccacaccttacaagccggttttgtaa-gttgagttaggcccaa 105  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||    
T  1892133 ctcctcaccttacaagccggttttgtaaggatgagttaggcccaa 1892089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 15844570 - 15844518
Alignment:
Q  60 cactccacaccttacaagccggttttgtaag-ttgagttaggcccaaaccaaa 111  Q
    |||||| |||||||| |||| |||||||||| ||||||||||||||| |||||    
T  15844570 cactcctcaccttactagccagttttgtaagattgagttaggcccaacccaaa 15844518  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 33040120 - 33040152
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  33040120 ggcactcctcaccttacaagccggttttgtaag 33040152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 33040527 - 33040559
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  33040527 ggcactcctcaccttacaagccggttttgtaag 33040559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 31564050 - 31564004
Alignment:
Q  58 ggcactccacaccttacaagccggttttgt-aagttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  31564050 ggcactcctcaccttacaagccggttttgtaaagttgagttaggccc 31564004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 41380787 - 41380826
Alignment:
Q  65 cacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41380787 cacaccttacaagccggttttgtaaggttgagttaggccc 41380826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 22407488 - 22407442
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  22407488 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 22407442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 22407695 - 22407649
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  22407695 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 22407649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 44573696 - 44573742
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  44573696 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 44573742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 44573993 - 44574039
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  44573993 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 44574039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 3985831 - 3985876
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  3985831 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 3985876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 10453750 - 10453718
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  10453750 ggcactcctcaccttacaagccggttttgtaag 10453718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 14170046 - 14170014
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  14170046 ggcactcctcaccttacaagccggttttgtaag 14170014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 27219386 - 27219418
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  27219386 ggcactcctcaccttacaagccggttttgtaag 27219418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 34715502 - 34715470
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  34715502 ggcactcctcaccttacaagccggttttgtaag 34715470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 38300330 - 38300298
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  38300330 ggcactccccaccttacaagccggttttgtaag 38300298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 11339727 - 11339678
Alignment:
Q  67 caccttacaagccggttttgtaagttgagttaggcccaaaccaaactcta 116  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||| ||||    
T  11339727 caccttacaagtcggttttgtaagtttagttaggcccaacccaaattcta 11339678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 11969109 - 11969158
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcccaaa 106  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  11969109 ggcactcctcaccttacaagccggttttgtaaggatgagttaggcccaaa 11969158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 93186 - 93139
Alignment:
Q  57 gggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  93186 gggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 93139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 33456018 - 33456077
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcccaaaccaaactcta 116  Q
    |||| ||| |||||||||| |||||||||||| |||||||||||||||| ||||| ||||    
T  33456018 ggcaatcctcaccttacaaaccggttttgtaaggttgagttaggcccaacccaaattcta 33456077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 884114 - 884160
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  884114 ggcaatcctcaccttacaagccggttttgtaaggttgagttaggccc 884160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 3008425 - 3008475
Alignment:
Q  67 caccttacaagccggttttgtaa-gttgagttaggcccaaaccaaactcta 116  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||| ||||    
T  3008425 caccttacaagccagttttgtaaggttgagttaggcccaacccaaattcta 3008475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 3976518 - 3976472
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  3976518 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 3976472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21214248 - 21214202
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  21214248 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 21214202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 42768381 - 42768335
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  42768381 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 42768335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 43195841 - 43195887
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  43195841 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 43195887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 901981 - 902026
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  901981 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 902026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 25441752 - 25441785
Alignment:
Q  57 gggcactccacaccttacaagccggttttgtaag 90  Q
    ||||||||| ||||||||||||||||||||||||    
T  25441752 gggcactcctcaccttacaagccggttttgtaag 25441785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 4493129 - 4493180
Alignment:
Q  67 caccttacaagccggttttgtaag--ttgagttaggcccaaaccaaactcta 116  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||| ||||    
T  4493129 caccttacaagccggttttgtaaggattgagttaggttcaaaccaaattcta 4493180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 14408056 - 14408092
Alignment:
Q  68 accttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14408056 accttacaagccggttttgtaaggttgagttaggccc 14408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 19860094 - 19860126
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||| ||||||||||||||||||||||||||||    
T  19860094 ggcaatccacaccttacaagccggttttgtaag 19860126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 21213932 - 21213900
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  21213932 ggcactcctcaccttacaagccggttttgtaag 21213900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 25286305 - 25286261
Alignment:
Q  60 cactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  25286305 cactcctcaccttacaagccggttttgtaaggatgagttaggccc 25286261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 30156265 - 30156297
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  30156265 ggcactcctcaccttacaagccggttttgtaag 30156297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 2104307 - 2104258
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcccaaa 106  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  2104307 ggcactcctcaccttacaagccggttttgtaaggatgagttaggcccaaa 2104258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 36332170 - 36332217
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggcccaa 105  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||||    
T  36332170 gcactcctcaccttacaagccggttttgtaaggatgagttaggcccaa 36332217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 19481439 - 19481393
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||    
T  19481439 ggcactccaaaccttacaagccggttttgtaaggatgagttaggccc 19481393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 20735579 - 20735625
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  20735579 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 20735625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 463129 - 463084
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  463129 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 463084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 11149469 - 11149424
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  11149469 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 11149424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 19609223 - 19609178
Alignment:
Q  67 caccttacaagccggttttgtaa-gttgagttaggcccaaaccaaa 111  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||||    
T  19609223 caccttacaagccggttttgtaaggttgagttaggctcaacccaaa 19609178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 19809996 - 19809951
Alignment:
Q  67 caccttacaagccggttttgtaa-gttgagttaggcccaaaccaaa 111  Q
    |||||||||||||| |||||||| |||||||||||||||| |||||    
T  19809996 caccttacaagccgattttgtaaggttgagttaggcccaacccaaa 19809951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 38474340 - 38474385
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcc 102  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||    
T  38474340 ggcactcctcaccttacaagccggttttgtaaggatgagttaggcc 38474385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 2697378 - 2697346
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  2697378 ggcactcctcaccttacaagccggttttgtaag 2697346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 17419844 - 17419876
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  17419844 ggcactcctcaccttacaagccggttttgtaag 17419876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 19937090 - 19937058
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  19937090 ggcactcctcaccttacaagccggttttgtaag 19937058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 20735812 - 20735844
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  20735812 ggcactcctcaccttacaagccggttttgtaag 20735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 31305768 - 31305800
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  31305768 ggcactcctcaccttacaagccggttttgtaag 31305800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 35024507 - 35024475
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  35024507 ggcactcctcaccttacaagccggttttgtaag 35024475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 36326963 - 36326995
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  36326963 ggcactcctcaccttacaagccggttttgtaag 36326995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 45264719 - 45264751
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  45264719 ggcactcctcaccttacaagccggttttgtaag 45264751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 30966130 - 30966070
Alignment:
Q  57 gggcactccacaccttacaagccggttttgt-aagttgagttaggcccaaaccaaactcta 116  Q
    ||||| ||| ||||||||||||||||||||| || ||||||||||||||| ||||| ||||    
T  30966130 gggcagtcctcaccttacaagccggttttgtaaatttgagttaggcccaacccaaattcta 30966070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 45031424 - 45031369
Alignment:
Q  57 gggcactccacaccttacaagccggttttgtaa-gttgagttaggcccaaaccaaa 111  Q
    ||||| ||| ||||||||||||||||||||||| |||| ||||||||||| |||||    
T  45031424 gggcaatcctcaccttacaagccggttttgtaaggttgtgttaggcccaacccaaa 45031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 18905913 - 18905959
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  18905913 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 18905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 21653861 - 21653907
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  21653861 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 21653907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 32931458 - 32931504
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  32931458 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 32931504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 34248134 - 34248180
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  34248134 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 34248180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 34248416 - 34248462
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  34248416 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 34248462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 36997223 - 36997269
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  36997223 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 36997269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 36993994 - 36993949
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcc 102  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||    
T  36993994 ggcactcctcaccttacaagccggttttgtaaggatgagttaggcc 36993949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 45031205 - 45031160
Alignment:
Q  67 caccttacaagccggttttgtaa-gttgagttaggcccaaaccaaa 111  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||    
T  45031205 cacctttcaagccggttttgtaaggttgagttaggcccaacccaaa 45031160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 48046423 - 48046462
Alignment:
Q  67 caccttacaagccggttttgtaa-gttgagttaggcccaa 105  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  48046423 caccttacaagccggttttgtaacgttgagttaggcccaa 48046462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21497730 - 21497684
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  21497730 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 21497684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 21498244 - 21498290
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  21498244 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 21498290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 29669410 - 29669364
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  29669410 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 29669364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 35399304 - 35399258
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  35399304 ggcaatcctcaccttacaagccggttttgtaaggttgagttaggccc 35399258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 35399463 - 35399417
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  35399463 ggcaatcctcaccttacaagccggttttgtaaggttgagttaggccc 35399417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 43972412 - 43972458
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  43972412 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 43972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 45427299 - 45427253
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  45427299 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 45427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 52214672 - 52214718
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  52214672 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 52214718  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 53740239 - 53740285
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  53740239 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 53740285  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 15665210 - 15665255
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcc 102  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||    
T  15665210 ggcactcctcaccttacaagccggttttgtaaggatgagttaggcc 15665255  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 36558512 - 36558467
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  36558512 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 36558467  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 41176764 - 41176809
Alignment:
Q  59 gcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  41176764 gcactcctcaccttacaagccggttttgtaaggatgagttaggccc 41176809  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 52827279 - 52827230
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggcccaaa 106  Q
    |||||||| ||||||||||||||||||||||| | ||||| |||||||||    
T  52827279 ggcactcctcaccttacaagccggttttgtaaggatgagtcaggcccaaa 52827230  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 991261 - 991293
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  991261 ggcactcctcaccttacaagccggttttgtaag 991293  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 18435973 - 18435941
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  18435973 ggcactcctcaccttacaagccggttttgtaag 18435941  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 27048455 - 27048423
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  27048455 ggcactcctcaccttacaagccggttttgtaag 27048423  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 28085751 - 28085783
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  28085751 ggcactcctcaccttacaagccggttttgtaag 28085783  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 29669725 - 29669693
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  29669725 ggcactcctcaccttacaagccggttttgtaag 29669693  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 29734618 - 29734650
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  29734618 ggcactcctcaccttacaagccggttttgtaag 29734650  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 1661238 - 1661192
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag-ttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||    
T  1661238 ggcactcctcaccttacaagccggttttgtaagaatgagttaggccc 1661192  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 1663651 - 1663605
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  1663651 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 1663605  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 7135290 - 7135244
Alignment:
Q  58 ggcactccacaccttacaagccggttttgt-aagttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  7135290 ggcactcctcaccttacaagccggttttgtaaagatgagttaggccc 7135244  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 43384327 - 43384281
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  43384327 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 43384281  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 28910089 - 28910121
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  28910089 ggcactcctcaccttacaagccggttttgtaag 28910121  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 37272092 - 37272060
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  37272092 ggcactcctcaccttacaagccggttttgtaag 37272060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 43288589 - 43288621
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  43288589 ggcactcctcaccttacaagccggttttgtaag 43288621  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 1744889 - 1744843
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  1744889 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 1744843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 8144074 - 8144120
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  8144074 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 8144120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 10418385 - 10418339
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  10418385 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 10418339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 24055156 - 24055110
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  24055156 ggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 24055110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 10733483 - 10733439
Alignment:
Q  60 cactccacaccttacaagccggttttgtaa-gttgagttaggccc 103  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  10733483 cactcctcaccttacaagccggttttgtaaggatgagttaggccc 10733439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 19054550 - 19054582
Alignment:
Q  58 ggcactccacaccttacaagccggttttgtaag 90  Q
    |||||||| ||||||||||||||||||||||||    
T  19054550 ggcactcctcaccttacaagccggttttgtaag 19054582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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