View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607-Insertion-7 (Length: 515)
Name: NF4607-Insertion-7
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 105 - 515
Target Start/End: Original strand, 30401394 - 30401804
Alignment:
| Q |
105 |
ctccgagaattcaaacggagacagaatatactgaggctagacatttagatcggagaaacggagctcgagaacaagttgaagagaatgttcgttttastcg |
204 |
Q |
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| T |
30401394 |
ctccgagaattcaaacggagacagaacataccaagactagacatttagatcagcgaaatggaactcgagaacaagttgaagagaatgttcgttttagtcg |
30401493 |
T |
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| Q |
205 |
aactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatcagacattacttttttccctctgcaacaagagagagaactgagagac |
304 |
Q |
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| T |
30401494 |
aactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatctgacgttacctttttccctctgcaacaagagagagaactcagagac |
30401593 |
T |
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| Q |
305 |
gatattcagaatactctaaggcaaacattggaggccgattcaagagtgacaccatcagatcatagtgctaatagttcttctacatccagatatcctccat |
404 |
Q |
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| T |
30401594 |
gatattcagaatactctaaggcaaacattagaggcagattcaagagtgtcaccatcggatcatagtgcttatagttgttctacatccagatatcctcaat |
30401693 |
T |
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| Q |
405 |
gtagtatgtctaactccatgtttagtaataaaaactatggcgttgagacctcacaattgccagaaggtaggtatgaggatctactggagcataggtccaa |
504 |
Q |
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| T |
30401694 |
ctagtatgtctaactccatgtttagtaatcaaaactatgacgttgagacctcacaattgcgagaaggtaggtatcaggatctactggagcataggtccaa |
30401793 |
T |
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| Q |
505 |
tttccttgaac |
515 |
Q |
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| T |
30401794 |
tttccttgaac |
30401804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 30401203 - 30401302
Alignment:
| Q |
7 |
actttcaatatttggccatgaagtggagcataatctacatccaggactttgtagcagtttgtctaacataaatgaaacagcacggtgtcatgaagatact |
106 |
Q |
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| T |
30401203 |
actttcaatatttggcaatgatgttgagcgtaatctacatccaggaccttgtagcagtttgactaacataaatgaaacaacacggtgtcatgaagatact |
30401302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 303
Target Start/End: Complemental strand, 10785453 - 10785255
Alignment:
| Q |
105 |
ctccgagaattcaaacggagacagaatatactgaggctagacatttagatcggagaaacggagctcgagaacaagttgaagagaatgttcgttttastcg |
204 |
Q |
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|||| |||||||| || ||||||| | || ||||| ||||||| ||||| | |||| ||||| ||||||| ||||| ||||||||||| | || |
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| T |
10785453 |
ctccaagaattcatactgagacaggaaatgctgagactagacaaatagatagacgaaatggagcccgagaacctgttgatcgcaatgttcgtttcagccg |
10785354 |
T |
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| Q |
205 |
aactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatcagacattacttttttccctctgcaacaagagagagaactgagaga |
303 |
Q |
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| T |
10785353 |
aactttaagtgtcggaaggcttcgtgatagagttcaccgccgatcaggattggctgacttcaacttttgccctctgacacaagagagagaactgagaga |
10785255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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