View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607_1D_high_3 (Length: 487)
Name: NF4607_1D_high_3
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 36724464 - 36724252
Alignment:
| Q |
11 |
actttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagacct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36724464 |
actttatttttacaaaaacatattggttctctcctctttgtgatgttaacataggggaagcatctgatttgcatacggctttggagtggacatcagacct |
36724365 |
T |
|
| Q |
111 |
tcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36724364 |
tcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagatgcattatagat |
36724265 |
T |
|
| Q |
211 |
gcttgtagacagt |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36724264 |
gcttgtagacagt |
36724252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 210 - 479
Target Start/End: Complemental strand, 36723895 - 36723626
Alignment:
| Q |
210 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
|
| Q |
310 |
cacataatactaactcccacacctatgatgatgtaccttcgtgtatttgacgtattttt-ctaatgaaatggattgaattgcttcttnnnnnnngacatt |
408 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||||||| | ||||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
36723795 |
cacataatactagctctcacacctatgatgatataccttcgtgtatttggcatatttttgctaatgaaatgccttgaattgattctt-aaaaaagacatt |
36723697 |
T |
|
| Q |
409 |
gttagttggttactagtaatcctccaaaatgaacacgtgcccactccaatagtaggcaagttgagtataat |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36723696 |
gttagttggttactagtaatcctccaaaatgaacacgtgcccactccaatagtaggcaagttgagtataat |
36723626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 712072 - 712314
Alignment:
| Q |
23 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
712072 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaaggagtttcttttcatacgactttggaatggacatcataccttcaatttgataa |
712171 |
T |
|
| Q |
123 |
tacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacag |
222 |
Q |
| |
|
| ||||||| ||||||||| | ||| | |||||||||| |||||||| | || |||||| | |||||||| |||| |||||| ||| |||||| || |
|
|
| T |
712172 |
tgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattatacttgcatgtagatag |
712271 |
T |
|
| Q |
223 |
ttatttcatagtagatttcaaaactctcaaattgagtttaata |
265 |
Q |
| |
|
|| ||||| | ||||||| |||||||||| |||||||||||| |
|
|
| T |
712272 |
ttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 23 - 387
Target Start/End: Original strand, 717282 - 717648
Alignment:
| Q |
23 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataa |
122 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
717282 |
caaaaaaatcttggttctctcctctttgtgatgttaacataggggaagtagttggtttacatacgattttgaagtggacatcacaccttcaatttgataa |
717381 |
T |
|
| Q |
123 |
tacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacag |
222 |
Q |
| |
|
| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| |||| ||||||| || |||||||| |
|
|
| T |
717382 |
tgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattatagttgaatgtagacaa |
717481 |
T |
|
| Q |
223 |
ttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagatagtcccacataatacta |
321 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||| || || ||||||| | | || | ||||||||||| |||| |||||||||| ||| |
|
|
| T |
717482 |
ttattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatatagccccacataatgcta |
717581 |
T |
|
| Q |
322 |
actcccacacctatgatgatgtaccttcgtgtatttgacgtatttt-tctaatgaaatggattgaat |
387 |
Q |
| |
|
|| | ||| |||||||||||||| || | |||||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
717582 |
gatctctcacttatgatgatgtaccgtcatttatttgacatattttaactaataaaatgcattgaat |
717648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 14541058 - 14541248
Alignment:
| Q |
75 |
tgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| |
|
|
| T |
14541058 |
tgatttgcatacggctttggagtggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatat |
14541157 |
T |
|
| Q |
175 |
atataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
265 |
Q |
| |
|
|| |||||||| || |||||||||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||| ||||||||||||| |
|
|
| T |
14541158 |
gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 2087632 - 2087537
Alignment:
| Q |
33 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttt |
132 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||| ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2087632 |
ttggttctctcctctttgtgatgttgatattggagaagcag----tttgcatacaactttgcaatggacatcagaccttcaatttgataaaatagatttt |
2087537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 36474006 - 36474068
Alignment:
| Q |
33 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttgga |
95 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||||||| | ||||||||||||| |||| |
|
|
| T |
36474006 |
ttggttttcccctctttgtgatgttgatataggggaagcaatgggtttgcatacggctctgga |
36474068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University