View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_11 (Length: 358)
Name: NF4607_1D_low_11
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 31204931 - 31205113
Alignment:
| Q |
1 |
atttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattccttttcatcttttatttattctcatatggttt |
100 |
Q |
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| T |
31204931 |
atttcattgtactactttgatattgagaaataattcaatttaatcattggaaacctaattggttatttcttttcatcttttatttattctcatatggttt |
31205030 |
T |
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| Q |
101 |
tagggacagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagt |
183 |
Q |
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| T |
31205031 |
tagagacagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagt |
31205113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 189 - 358
Target Start/End: Original strand, 35823073 - 35823237
Alignment:
| Q |
189 |
gttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgattcaatttcaattttccctttcttatt |
288 |
Q |
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| T |
35823073 |
gttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgattcaatttcaattttccctttcttatt |
35823172 |
T |
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| Q |
289 |
attaagatgtcaggcttagcttagcttgcacaaagtgcttctccagttcatgtctacatcggcaccaaga |
358 |
Q |
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| T |
35823173 |
attaagatgtcag-----gcttagcttgcacaaagtgcttctccagttcatgtctacatcggcaccaaga |
35823237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 18436404 - 18436245
Alignment:
| Q |
17 |
ttgatattgagaaataattcaattcaatcattggaaacctaattggttattcc-ttttcatcttttatttattctcatatggttttaggga-cagtgaga |
114 |
Q |
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| T |
18436404 |
ttgacattgagaaataattcaatt-----attggaaacctaattggttatccctttttcatcttttacttattctcatatggtatcatagagccgtaaga |
18436310 |
T |
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| Q |
115 |
tccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatc |
179 |
Q |
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| T |
18436309 |
tccatggcacctcgcaacaatgcttcaacatctaatgagcagggtgctccagcaattgatccatc |
18436245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 18431809 - 18431736
Alignment:
| Q |
17 |
ttgatattgagaaataattcaattcaatcattggaaacctaattggttattcc-ttttcatcttttatttattctcata |
94 |
Q |
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| T |
18431809 |
ttgacattgagaaataattcaatt-----attggaaacctaattggttatccctttttcatcttttacttattctcata |
18431736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 30151677 - 30151739
Alignment:
| Q |
37 |
aattcaatcattggaaacctaattggttattcc-ttttcatcttttatttattctcatatggt |
98 |
Q |
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|||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
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| T |
30151677 |
aattcaattattggaaacctaattggttatccctttttcatcttttacttattctcatatggt |
30151739 |
T |
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