View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_13 (Length: 336)
Name: NF4607_1D_low_13
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 315
Target Start/End: Original strand, 18678931 - 18679134
Alignment:
| Q |
127 |
ttcattgattgttgaaaaagagcattacaactagttatatacacttgatttgtgatgcaagtt--------------caccaaagtccgaaaa-cgatta |
211 |
Q |
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| T |
18678931 |
ttcattgattgatgaaaaagagtatcacaactagctgtatacacttgatttgtgatgtaagttattagtaactaactcctcaaagtccgaaaaacggtta |
18679030 |
T |
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| Q |
212 |
tgtaactaactaccatatgattatggattaatattctaataaacaccctttaatccataatcatacaagcttatgaggcataacttgtccctcaagtaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
18679031 |
tgtaactaactaccatatgattatggattaatattttaatacaccctctttaatccataatcatacaagcttatgtgacctaacttgtccctcaagtaaa |
18679130 |
T |
|
| Q |
312 |
caaa |
315 |
Q |
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|||| |
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| T |
18679131 |
caaa |
18679134 |
T |
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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 30808009 - 30808145
Alignment:
| Q |
127 |
ttcattgattgttgaaaaagagcattacaactagttatatacacttgatttgtgatgcaagt-------------tcaccaaagtccgaaaacgattatg |
213 |
Q |
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| T |
30808009 |
ttcattgattgatgaaaaagagcattgcaattagttatatacacttgacttgttatgcaagttatcagtaactactcagcaaagtccagaaatggttatg |
30808108 |
T |
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| Q |
214 |
taactaactaccatatgattatggattaatattctaa |
250 |
Q |
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| T |
30808109 |
taactaactaccctatgattatggattaatattctaa |
30808145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 2643696 - 2643788
Alignment:
| Q |
10 |
tggcctctaaattaatgtaaaaaagttataaattgataata-----------tatcagaaatcataaagttatgtgatgagatcataaaataa |
91 |
Q |
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| T |
2643696 |
tggcctctaaattaatgtaaaaaagttataaattgataataataataataataatcagaaatcataaagttaggtgatgagatcataaaataa |
2643788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 18508600 - 18508541
Alignment:
| Q |
257 |
ccctttaatccataatcatacaagcttatgaggcataacttgtccctcaagtaaacaaat |
316 |
Q |
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| T |
18508600 |
ccctttaatctataatcctacaagcttatgagacctaatttgtccctcaagtaaacaaat |
18508541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 8543712 - 8543775
Alignment:
| Q |
127 |
ttcattgattgttgaaaaaga-gcattacaactagttatatacacttgatttgtgatgcaagtt |
189 |
Q |
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| T |
8543712 |
ttcattgattgatgaaaaaaaagcattacaactagttatatacacttgacttgtgatgcaagtt |
8543775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 40197475 - 40197536
Alignment:
| Q |
127 |
ttcattgattgttgaaaaagagcattacaactagttatatacacttgatttgtgatgcaagtt |
189 |
Q |
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| T |
40197475 |
ttcattgattgatgaaaga-agcattacaactagttatatacacttgacttgtgatgcaagtt |
40197536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 33704514 - 33704597
Alignment:
| Q |
226 |
atatgattatggattaatattctaataaacaccctttaatccataatcatacaagcttatgaggcataacttgtccctcaagta |
309 |
Q |
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| T |
33704514 |
atatgattatggattagtcatttaatacaacccctttaatccataatcttacaagcttatgagacctaacttgtcccttaagta |
33704597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 33716852 - 33716928
Alignment:
| Q |
226 |
atatgattatggattaatattctaataaacaccctttaatccataatcatacaagcttatgaggcataacttgtccct |
303 |
Q |
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| T |
33716852 |
atatgattatggattagtcatttaatacaacccctttaatccacaatcttacaagcttatgagac-taacttgtccct |
33716928 |
T |
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