View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_1D_low_15 (Length: 310)

Name: NF4607_1D_low_15
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_1D_low_15
NF4607_1D_low_15
[»] chr4 (10 HSPs)
chr4 (2-291)||(51304265-51304554)
chr4 (46-134)||(5288532-5288620)
chr4 (1-168)||(37762780-37762950)
chr4 (52-162)||(25817646-25817757)
chr4 (78-133)||(29065320-29065375)
chr4 (44-166)||(24060553-24060676)
chr4 (45-167)||(41545391-41545514)
chr4 (88-168)||(19482493-19482574)
chr4 (33-117)||(42504191-42504275)
chr4 (85-156)||(13218442-13218514)
[»] chr2 (14 HSPs)
chr2 (33-168)||(37714398-37714534)
chr2 (44-168)||(13716718-13716843)
chr2 (44-168)||(32976028-32976155)
chr2 (46-155)||(35457389-35457498)
chr2 (33-172)||(38320197-38320337)
chr2 (78-168)||(37899545-37899636)
chr2 (1-168)||(19945689-19945857)
chr2 (88-166)||(20142945-20143024)
chr2 (1-133)||(27007180-27007312)
chr2 (44-133)||(14131167-14131256)
chr2 (88-166)||(31645149-31645229)
chr2 (41-133)||(4434308-4434403)
chr2 (44-117)||(27407449-27407522)
chr2 (86-134)||(3167906-3167954)
[»] chr5 (8 HSPs)
chr5 (44-168)||(30735329-30735454)
chr5 (33-167)||(30700867-30701000)
chr5 (33-166)||(3040257-3040391)
chr5 (46-168)||(25493794-25493917)
chr5 (89-168)||(40519154-40519234)
chr5 (44-119)||(7547291-7547365)
chr5 (33-121)||(34280103-34280191)
chr5 (89-168)||(30071746-30071826)
[»] chr1 (12 HSPs)
chr1 (44-168)||(35413001-35413126)
chr1 (46-166)||(10061569-10061690)
chr1 (44-167)||(29657340-29657464)
chr1 (42-166)||(35149670-35149795)
chr1 (10-160)||(26469927-26470078)
chr1 (78-168)||(21540049-21540140)
chr1 (78-168)||(49313582-49313673)
chr1 (44-166)||(43537153-43537279)
chr1 (41-117)||(11470051-11470127)
chr1 (100-166)||(48852620-48852687)
chr1 (88-133)||(13085093-13085138)
chr1 (41-168)||(23906611-23906739)
[»] chr6 (6 HSPs)
chr6 (41-166)||(28867162-28867288)
chr6 (44-168)||(6784710-6784835)
chr6 (44-168)||(32871761-32871886)
chr6 (44-166)||(2130500-2130623)
chr6 (47-150)||(6519233-6519337)
chr6 (1-168)||(34713476-34713644)
[»] chr8 (7 HSPs)
chr8 (40-166)||(38585092-38585219)
chr8 (45-121)||(5686299-5686375)
chr8 (78-151)||(33543341-33543414)
chr8 (100-166)||(29543676-29543743)
chr8 (33-118)||(5718444-5718529)
chr8 (88-168)||(29414359-29414438)
chr8 (78-133)||(26415563-26415618)
[»] chr7 (8 HSPs)
chr7 (46-167)||(46297589-46297711)
chr7 (88-167)||(23611801-23611881)
chr7 (44-117)||(22631507-22631580)
chr7 (44-117)||(1985033-1985106)
chr7 (44-168)||(21882777-21882902)
chr7 (77-168)||(8123666-8123758)
chr7 (99-155)||(44600996-44601053)
chr7 (44-167)||(20125566-20125690)
[»] chr3 (9 HSPs)
chr3 (44-168)||(1632784-1632908)
chr3 (1-133)||(18271928-18272060)
chr3 (44-166)||(45852942-45853065)
chr3 (44-133)||(26442960-26443049)
chr3 (33-168)||(34905821-34905957)
chr3 (78-167)||(40840690-40840780)
chr3 (44-121)||(1713986-1714063)
chr3 (37-168)||(48897681-48897813)
chr3 (100-166)||(10593524-10593591)
[»] scaffold0122 (1 HSPs)
scaffold0122 (44-168)||(18609-18734)
[»] scaffold0018 (1 HSPs)
scaffold0018 (78-166)||(69967-70056)
[»] scaffold0247 (1 HSPs)
scaffold0247 (75-114)||(19220-19259)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-107)||(27074-27180)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 51304265 - 51304554
Alignment:
Q  2 atagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaa 101  Q
    |||||||||||||||||||||||        ||||||| ||||||||||||||||| ||||| ||||||||   | ||||||||||||||||||||||||    
T  51304265 atagatatagtgataaaatttattaaattttttttaagacaatgtatttgctaacatatttttttaattgcacgccattatctcctttgatttccgtcaa 51304364  T
Q  102 ataacaaatttaattgattgcgacattttcttatatatttttgataaaaactctctagataaatagcgatgttgttatgcttttacctctttagagcgtg 201  Q
    |||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||||| ||||||| |||  |||||||||||||||||||||    
T  51304365 ataacaaatttaattgattgtgatattttcttatatattcttaataaaaactctctagataaataacgatgttattaaacttttacctctttagagcgtg 51304464  T
Q  202 gaccttgtgtcttttatttctgaatacggtcctcacatagtactattaggctcgctctgggaataacatttggtgggtgatctgatctga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51304465 gaccttgtgtcttttatttctgaatacggtcctcacatagtactattaggctcgctctgggaataacatttggtgggtgatctgatctga 51304554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 5288620 - 5288532
Alignment:
Q  46 tatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctta 134  Q
    |||||||||||||||||| |||||| |  || ||||||||| ||||||| || |||||||||||||||||||  || ||||||||||||    
T  5288620 tatttgctaacacatttttttaattacacaccattatctcccttgatttacggcaaataacaaatttaattggctgagacattttctta 5288532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 37762950 - 37762780
Alignment:
Q  1 gatagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtca 100  Q
    |||||||| ||||| ||||||||||       ||| ||| ||||||||||| |||||| ||| ||||||| |  |  ||||| |||||||| || |||||    
T  37762950 gatagatagagtgacaaaatttatcaaaaaaatttcaagacaatgtatttgttaacacttttccttaattacacatcattatttcctttgactttcgtca 37762851  T
Q  101 aataacaaatttaattgat--tgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||| |  || | ||||||||| ||| ||| ||||| |||||||| ||||||||||||    
T  37762850 aataacaaatttaattggttgtgtggcattttcttgataaattcttgatgaaaactctttagataaatagc 37762780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 25817757 - 25817646
Alignment:
Q  52 ctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaa 150  Q
    ||||||||||||||||||| |  || |||| |||  ||||||||||||||||||||||||||||||  || ||| ||||||| ||  ||| |||||||||    
T  25817757 ctaacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaattggctgagaccttttcttgatcaattcttgataaaa 25817658  T
Q  151 actctctagata 162  Q
      ||||||||||    
T  25817657 tgtctctagata 25817646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 29065320 - 29065375
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt 133  Q
    |||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||    
T  29065320 attacctccattgatttccgtcaaataacaaatttaattgattgagactttttctt 29065375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 24060676 - 24060553
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||||||| ||||||| |  || ||||||||| ||||||||   | ||||||||||||||||   |  ||||||||||| ||  ||| |    
T  24060676 tgtatttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaattagcttagacattttcttgatcaattct 24060577  T
Q  143 tgataaaaactctctagataaata 166  Q
    ||||||||| ||| ||||||||||    
T  24060576 tgataaaaattctttagataaata 24060553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 41545514 - 41545391
Alignment:
Q  45 gtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatattttt 143  Q
    |||||||||||||| |||  |||||| |  || |||| || ||| |||||| | ||||||||||||||||||| ||| | | ||||||| ||| ||| ||    
T  41545514 gtatttgctaacacctttcattaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttgaggccttttcttgataaattctt 41545415  T
Q  144 gataaaaactctctagataaatag 167  Q
    |||  |||||||||||||||||||    
T  41545414 gatggaaactctctagataaatag 41545391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 19482574 - 19482493
Alignment:
Q  88 ttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    |||||||||| ||||||||||||||||||| |||  | |||||||| ||| ||| || |  |||||||||||||||||||||    
T  19482574 ttgatttccgccaaataacaaatttaattggttgaaaaattttcttgataaattcttaaataaaactctctagataaatagc 19482493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 42504191 - 42504275
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattg 117  Q
    ||||||| || |||||||| |||||| ||| ||||||| |  |  |||| |||| |||||||||| |||||||||||||||||||    
T  42504191 ttttaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattg 42504275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 13218514 - 13218442
Alignment:
Q  85 cctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctc 156  Q
    ||||| ||||| | ||||||||||||||||||||  | ||| ||||||| ||| |||||| ||||||||||||    
T  13218514 cctttaatttctgacaaataacaaatttaattgaccgagaccttttcttaataaatttttaataaaaactctc 13218442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 37714534 - 37714398
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttct 132  Q
    |||||||||| ||||||||||||||| ||| ||||||| |  || ||||||||||||||||||| |||||||||||||||||||| |||  || ||||||    
T  37714534 ttttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgataccttttct 37714435  T
Q  133 t-atatatttttgataaaaactctctagataaatagc 168  Q
    | ||| ||  |||||||||||||||||||||||||||    
T  37714434 tgataaatcattgataaaaactctctagataaatagc 37714398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 13716718 - 13716843
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||||||||||| |  ||||||| |||||||||||| || ||||| ||||||||||||| ||| ||| ||||||| ||| ||| |    
T  13716718 tgtatttgctaacaccttttcttaattacacactattacctcctttgattttcgccaaatcacaaatttaattggttgagactttttcttgataaattct 13716817  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||||||||||||    
T  13716818 tgataaaaactctctagataaatagc 13716843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 32976028 - 32976155
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattat--ctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatt 140  Q
    ||||||| ||||||| ||||||||||| | ||| ||| |  || |||||||||||| ||||||||||||||||||| ||| ||||||||||| ||  |||    
T  32976028 tgtatttactaacaccttttcttaattacataccattttaccttctttgatttccgacaaataacaaatttaattggttgagacattttcttgatcaatt 32976127  T
Q  141 tttgataaaaactctctagataaatagc 168  Q
     ||||||||| |||||||||||||||||    
T  32976128 cttgataaaatctctctagataaatagc 32976155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 35457498 - 35457389
Alignment:
Q  46 tatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttcttatatatttttga 145  Q
    |||||| |||||||||| ||||||| |  || |||| |||||||||||||||  |||||| |||||||||||||||  || |||||||||| ||| ||||    
T  35457498 tatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaattgattgaaaccttttcttataaattcttga 35457399  T
Q  146 taaaaactct 155  Q
    ||||||||||    
T  35457398 taaaaactct 35457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 38320197 - 38320337
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttct 132  Q
    ||||||| || |||||||| |||||||||| |||| || |  |  |||| ||||||||||||||  ||||||||||||||||||| |||  |  ||||||    
T  38320197 ttttaagacagtgtatttgataacacatttccttatttacacatcattacctcctttgatttccaccaaataacaaatttaattggttgaaaacttttct 38320296  T
Q  133 t-atatatttttgataaaaactctctagataaatagcgatg 172  Q
    | ||| ||| ||||||||||||||||||||||||| |||||    
T  38320297 tgataaattcttgataaaaactctctagataaataacgatg 38320337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 37899545 - 37899636
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    |||| |||||||||||| || ||||| ||||||||||||| |||  || ||||||| ||| |||||||||||||||||||||||||||||||    
T  37899545 attacctcctttgattttcgacaaatcacaaatttaattggttgaaaccttttcttgataaatttttgataaaaactctctagataaatagc 37899636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 19945689 - 19945857
Alignment:
Q  1 gatagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtca 100  Q
    |||||||| ||||| ||||||||||       ||||||| || |||||||| ||| |  ||| ||||||| |  || |||| |||| || ||||||||||    
T  19945689 gatagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatttccgtca 19945788  T
Q  101 aataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||||  | |||||||| || ||| ||| || |||||||||||||| |||||||||    
T  19945789 aataacaaatttaattgaccgagacatttttttaataaattcttaataaaaactctctaaataaatagc 19945857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 20143024 - 20142945
Alignment:
Q  88 ttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaata 166  Q
    |||||||||| ||||||| ||||||||||| ||| ||| ||||||| ||| ||| |||||||||||||||||||||||||    
T  20143024 ttgatttccgccaaataataaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaata 20142945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 27007312 - 27007180
Alignment:
Q  1 gatagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtca 100  Q
    |||||||| ||||| ||||||||||       ||||||| || |||||||| |||||| ||| ||||| | |  ||||||| |||| |||||||||| ||    
T  27007312 gatagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacctcccttgatttccgcca 27007213  T
Q  101 aataacaaatttaattgattgcgacattttctt 133  Q
    ||||||||||||| ||| ||| |||| ||||||    
T  27007212 aataacaaatttatttggttgagacaatttctt 27007180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 14131256 - 14131167
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt 133  Q
    ||||||||||||||||||| ||||||| |  || ||||||||  |||||||||| ||||||||| ||||||||| |   |||||||||||    
T  14131256 tgtatttgctaacacatttccttaattacacaccattatctcgcttgatttccgccaaataacagatttaattggtccagacattttctt 14131167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 31645149 - 31645229
Alignment:
Q  88 ttgatttccgtcaaataacaaatttaattgattgcgacattttctt--atatatttttgataaaaactctctagataaata 166  Q
    |||||||||| ||||| | ||||||||||| ||  |||||||| ||  ||| ||| |||||||||||||||||||||||||    
T  31645149 ttgatttccgccaaattaaaaatttaattggttaagacattttttttgataaattcttgataaaaactctctagataaata 31645229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 4434403 - 4434308
Alignment:
Q  41 caatgtatttgctaacacattttcttaattgcgtactattatctcct---ttgatttccgtcaaataacaaatttaattgattgcgacattttctt 133  Q
    |||| ||||||| ||||||||| ||||||| |  || |||| |||||   ||||||| || |||||||||||||||||||| || ||| |||||||    
T  4434403 caatatatttgccaacacatttacttaattacacaccattacctcctcccttgattttcggcaaataacaaatttaattgactgggaccttttctt 4434308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 27407522 - 27407449
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattg 117  Q
    |||||||||||| |||||| ||||||| |  |  ||||||| | ||||||||||  ||||||||||||||||||    
T  27407522 tgtatttgctaatacatttccttaattacacagcattatcttccttgatttccggtaaataacaaatttaattg 27407449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 3167954 - 3167906
Alignment:
Q  86 ctttgatttccgtcaaataacaaatttaattgattgcgacattttctta 134  Q
    |||||||||||| ||||||| ||||||||||| ||| ||| ||||||||    
T  3167954 ctttgatttccgacaaataataaatttaattggttgagaccttttctta 3167906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 30735329 - 30735454
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||||||||||| |  |  |||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |    
T  30735329 tgtatttgctaacactttttcttaattacccagcattacctcccttgatttccgccaaataacaaatttaattgattgagacattttcttgatatattct 30735428  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    | ||||||||| ||||||||||||||    
T  30735429 taataaaaactatctagataaatagc 30735454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 30700867 - 30701000
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttct 132  Q
    ||||||| || ||||||||||||||| ||||||||||| |  |  |||| |||| || |||| |||||||||||||||||||||||||| ||||||||||    
T  30700867 ttttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaattttcgtcaaataacaaatttaattgattgagacattttct 30700966  T
Q  133 t-atatatttttgataaaaactctctagataaatag 167  Q
    | ||||||||||||||||||  ||||||||||||||    
T  30700967 taatatatttttgataaaaa--ctctagataaatag 30701000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 3040257 - 3040391
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttct 132  Q
    ||||||| || ||||||||||||||| ||| ||||||| |  || |||| |||| ||||||| |  || |||||||||||||||||||| ||||||||||    
T  3040257 ttttaagacagtgtatttgctaacacctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattgattgagacattttct 3040356  T
Q  133 t-atatatttttgataaaaactctctagataaata 166  Q
    | ||| ||| |||||||||||||||||| ||||||    
T  3040357 tgataaattcttgataaaaactctctaggtaaata 3040391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 25493917 - 25493794
Alignment:
Q  46 tatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttg 144  Q
    |||||| ||| |||||| ||||||| |  || |||| ||||||||||||| | |||| ||||||||||||||  || ||||||||||| ||  ||| |||    
T  25493917 tatttgttaatacatttccttaattacacaccattacctcctttgatttctgacaaagaacaaatttaattggctgagacattttcttgatcaattcttg 25493818  T
Q  145 ataaaaactctctagataaatagc 168  Q
    ||||||||||||||||||||||||    
T  25493817 ataaaaactctctagataaatagc 25493794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 40519234 - 40519154
Alignment:
Q  89 tgatttccgtcaaataacaaatttaattgattgcgacattttctta-tatatttttgataaaaactctctagataaatagc 168  Q
    |||||||| |||||||||||||||||||| ||| ||| | |||||| || ||| |||||||||||||||||||||||||||    
T  40519234 tgatttccatcaaataacaaatttaattggttgagacttattcttaataaattcttgataaaaactctctagataaatagc 40519154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 7547365 - 7547291
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgat 119  Q
    ||||||||||||||||||| ||||||| |  |  ||||||||||| ||||||||||||||||||||||| ||||||    
T  7547365 tgtatttgctaacacatttccttaattacaaatcattatctcctt-gatttccgtcaaataacaaatttgattgat 7547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 34280103 - 34280191
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattg 121  Q
    ||||||| || |||||||| |||||  ||| ||||||| | ||| ||||||| | || ||||||| |||||||||||||||||||||||    
T  34280103 ttttaagtcagtgtatttgttaacatctttccttaattacataccattatcttccttaatttccgccaaataacaaatttaattgattg 34280191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 30071826 - 30071746
Alignment:
Q  89 tgatttccgtcaaataacaaatttaattgattgcgacattttcttat-atatttttgataaaaactctctagataaatagc 168  Q
    ||||||||  ||||||| ||||||||||| ||| ||| ||||||| | | ||| | |||||||||||| ||||||||||||    
T  30071826 tgatttccaacaaataataaatttaattggttgagaccttttcttgttaaattctagataaaaactctttagataaatagc 30071746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 35413126 - 35413001
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    |||||||| |||||| ||| ||||||| |  ||||||| |||| |||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||| |    
T  35413126 tgtatttgttaacacctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgagaccttttcttgataaattat 35413027  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||||||||||||    
T  35413026 tgataaaaactctctagataaatagc 35413001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 10061690 - 10061569
Alignment:
Q  46 tatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttg 144  Q
    ||||||||||||||||| ||||||| |  |  |||| |||| |||||||| ||||||||||||||||||||| ||| ||| |||| || ||| ||| |||    
T  10061690 tatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaatttaattggttgagacttttttttgataaattcttg 10061591  T
Q  145 ataaaaactctctagataaata 166  Q
    ||||||||||||||||||||||    
T  10061590 ataaaaactctctagataaata 10061569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 29657464 - 29657340
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||| ||||||| | ||  |||| |||||||||||| || ||||||||||||||||||| ||| ||| ||||||| |   |||||    
T  29657464 tgtatttgctaacacctttccttaattacatatcattacctcctttgattttcggcaaataacaaatttaattggttgagaccttttcttgaccaatttt 29657365  T
Q  143 tgataaaaactctctagataaatag 167  Q
    |||||||| ||||||||||||||||    
T  29657364 tgataaaatctctctagataaatag 29657340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 35149670 - 35149795
Alignment:
Q  42 aatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatt 140  Q
    ||||||||||||||||| ||| |||||||    |  ||||||||| |||||||  ||||||||||||||||||||| ||  || |||||||| ||| |||    
T  35149670 aatgtatttgctaacacctttccttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattggttaagatattttcttgataaatt 35149769  T
Q  141 tttgataaaaactctctagataaata 166  Q
     |||||||||||||||||||||||||    
T  35149770 cttgataaaaactctctagataaata 35149795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 26470078 - 26469927
Alignment:
Q  10 agtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaa 109  Q
    ||||||||||||||||       ||||||  || ||||||||||||||| ||| ||||||| |  || ||||||| ||||||||| | | |||||| |||    
T  26470078 agtgataaaatttatcaagaaaattttaaaacagtgtatttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataataaa 26469979  T
Q  110 tttaattgattgcgacattttctt-atatatttttgataaaaactctctaga 160  Q
    |||||||  ||| ||||||||||| ||| ||| |||||||||||||||||||    
T  26469978 tttaatttgttgagacattttcttgataaattcttgataaaaactctctaga 26469927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 21540140 - 21540049
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    ||||||||| || ||||||| |||||||||||||||||||  || ||||||||||| |||  || ||||||||||||||||| |||||||||    
T  21540140 attatctcccttaatttccgccaaataacaaatttaattggctgagacattttcttgataatttcttgataaaaactctctaaataaatagc 21540049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 49313673 - 49313582
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    ||||||| |||||||||||| | |||||||||||||||| |||| ||||||||||| ||  ||| |||||||||||||| | ||||||||||    
T  49313673 attatcttctttgatttccgactaataacaaatttaattaattgagacattttcttgatcaattcttgataaaaactctatggataaatagc 49313582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 43537153 - 43537279
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    |||||||| ||||||||||  |||||| |  || |||| |||| |||||||||| |||||||||||||||||||  || ||| ||||||| ||  ||| |    
T  43537153 tgtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagaccttttcttgattaattct 43537252  T
Q  143 tgat---aaaaactctctagataaata 166  Q
    ||||   ||||||||||||||||||||    
T  43537253 tgataaaaaaaactctctagataaata 43537279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 11470127 - 11470051
Alignment:
Q  41 caatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattg 117  Q
    ||||||||||  ||||| |||||||||||| |  |  |||| |||| |||||||||| |||||||||||||||||||    
T  11470127 caatgtatttcttaacatattttcttaattacacatcattacctcccttgatttccgccaaataacaaatttaattg 11470051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 48852687 - 48852620
Alignment:
Q  100 aaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaata 166  Q
    |||||||||||||||||||||   ||||||| || ||| ||| || ||||||||||||||||||||||    
T  48852687 aaataacaaatttaattgattaaaacatttttttgataaattcttaataaaaactctctagataaata 48852620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 13085093 - 13085138
Alignment:
Q  88 ttgatttccgtcaaataacaaatttaattgattgcgacattttctt 133  Q
    |||||||||| |||||||||||||||||||| || || ||||||||    
T  13085093 ttgatttccggcaaataacaaatttaattgactgagatattttctt 13085138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 23906611 - 23906739
Alignment:
Q  41 caatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatat 139  Q
    |||||||||||||||||| |||  |||||| |  || |||| |||  |||||||  | |||||||||||||||||||  ||  || ||||||| ||  ||    
T  23906611 caatgtatttgctaacacctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaattggctgaaactttttcttgatcaat 23906710  T
Q  140 ttttgataaaaactctctagataaatagc 168  Q
    | ||||||||| || ||||||||||||||    
T  23906711 tcttgataaaacctttctagataaatagc 23906739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 28867288 - 28867162
Alignment:
Q  41 caatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatat 139  Q
    ||||||||||||||| |||||| ||||||| | |||||||| ||||||||||||||  |||||||||||||||||||||||  || ||||||| ||  ||    
T  28867288 caatgtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatttaattgattgaaactttttcttaatcaat 28867189  T
Q  140 ttttgataaaaactctctagataaata 166  Q
    | ||||||||| |||| ||||||||||    
T  28867188 tcttgataaaatctctttagataaata 28867162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 6784710 - 6784835
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||||||||||| |  || ||||||||| |||||||||| |||||||||||||||||||  || ||  |||| || ||| ||| |    
T  6784710 tgtatttgctaacaccttttcttaattacacaccattatctcccttgatttccgacaaataacaaatttaattggctgagatcttttattgataaattgt 6784809  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||||||||||||    
T  6784810 tgataaaaactctctagataaatagc 6784835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 32871761 - 32871886
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||| ||||||  ||| ||||||| |  ||||||| |||| |||||||||||||||||||||||||||||| |||  || ||||||| ||| ||| |    
T  32871761 tgtatttactaacatttttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgaaaccttttcttgataaattct 32871860  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||||||||||||    
T  32871861 tgataaaaactctctagataaatagc 32871886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 2130500 - 2130623
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||| ||||||| |  || || | ||||||||||||||| ||||||||||||||||||| ||| ||  ||||||| ||| |||||    
T  2130500 tgtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattggttgagattttttcttgataaatttt 2130599  T
Q  143 tgataaaaactctctagataaata 166  Q
    | || |||||||||||||||||||    
T  2130600 ttattaaaactctctagataaata 2130623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 6519337 - 6519233
Alignment:
Q  47 atttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttga 145  Q
    |||||||||| ||||||||||||| |  |  ||||  ||||||||||| || |||||||||||||||||||| || ||||||||||| ||  ||||||||    
T  6519337 atttgctaactcattttcttaattacacatcattacatcctttgattttcggcaaataacaaatttaattgactgagacattttcttgatcaatttttga 6519238  T
Q  146 taaaa 150  Q
    |||||    
T  6519237 taaaa 6519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 34713644 - 34713476
Alignment:
Q  1 gatagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtca 100  Q
    |||||||| ||||| ||||||||||       |||||||  | |||||||| |||||| ||||||||| | |  || ||||  ||| ||||||| || ||    
T  34713644 gatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattacatcccttgattttcgcca 34713545  T
Q  101 aataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    ||||||||||||||||  ||| |||| |||||| ||| ||| ||||||||||||||||  |||||||||    
T  34713544 aataacaaatttaattagttgagacaatttcttgataaattcttgataaaaactctctgaataaatagc 34713476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 38585092 - 38585219
Alignment:
Q  40 gcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atata 138  Q
    ||||||||||||||||||| |||  |||||| |  || |||| ||||||||||||||| ||||| |||||||||||| ||||  |||||||||| ||| |    
T  38585092 gcaatgtatttgctaacacttttctttaattacacacaattacctcctttgatttccgccaaatgacaaatttaattaattgaaacattttcttgataaa 38585191  T
Q  139 tttttgataaaaactctctagataaata 166  Q
    || ||||||||||||||||| |||||||    
T  38585192 ttcttgataaaaactctctaaataaata 38585219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 5686299 - 5686375
Alignment:
Q  45 gtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattg 121  Q
    ||||||||||||||||||  |||||| | || ||||| |||| |||||||||| |||||||||||||||||||||||    
T  5686299 gtatttgctaacacatttcattaattacatattattacctcccttgatttccggcaaataacaaatttaattgattg 5686375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 33543414 - 33543341
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttcttatatatttttgataaaaa 151  Q
    ||||||||| |||||||| | |||||||||||||| |||| ||| |||||||| ||||| ||||||||||||||    
T  33543414 attatctcccttgatttcagccaaataacaaattttattggttgagacatttttttataaatttttgataaaaa 33543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 29543676 - 29543743
Alignment:
Q  100 aaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaata 166  Q
    |||||||||||||||||| ||| || |||||||| ||| |||||||||||||||||||| ||||||||    
T  29543676 aaataacaaatttaattggttgagatattttcttgataaatttttgataaaaactctcttgataaata 29543743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 5718444 - 5718529
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattga 118  Q
    ||||||| || ||||||||||||||||||| ||||||| |  || |||| || | |||||||||| ||||||| ||||||||||||    
T  5718444 ttttaagacagtgtatttgctaacacatttccttaattacacaccattaccttccttgatttccgacaaataataaatttaattga 5718529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 29414438 - 29414359
Alignment:
Q  88 ttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    ||||||| || |||||||||||||||||||  || ||||||||||| ||  ||||||||||||||  |||||||||||||||    
T  29414438 ttgattttcggcaaataacaaatttaattggctgagacattttcttgatcaatttttgataaaaa--ctctagataaatagc 29414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 26415618 - 26415563
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt 133  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||| ||| |||||||    
T  26415618 attatctcttttaatttccgtcaaataataaatttaattggttgagaccttttctt 26415563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 46297711 - 46297589
Alignment:
Q  46 tatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttg 144  Q
    ||||||||||||||||| ||||||| |  || |||| |||| ||||||| || ||||||||||||| || ||  || ||||||||||| ||| ||| |||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaattcttg 46297612  T
Q  145 ataaaaactctctagataaatag 167  Q
    |||||||||||||||||||||||    
T  46297611 ataaaaactctctagataaatag 46297589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 23611801 - 23611881
Alignment:
Q  88 ttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatag 167  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||| ||| ||| || |||||||||||||||||||||||    
T  23611801 ttgatttccgtcaaataacaaatttaatttgttgagacattttcttgataaattcttaataaaaactctctagataaatag 23611881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 22631580 - 22631507
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattg 117  Q
    |||||| |||||||| ||| ||||||| |  ||||||||||||||||||||||| |||||||||||||||||||    
T  22631580 tgtattagctaacacctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaattg 22631507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 1985106 - 1985033
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattg 117  Q
    ||||||||||||||||||| ||||||| | ||| |||| || | |||||||||| |||||||||||||||||||    
T  1985106 tgtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaattg 1985033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 21882777 - 21882902
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||| ||||||| |  || |||| |||| |||||||||| |||||||||||||||||||  || ||  ||||||| ||  ||| |    
T  21882777 tgtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagatcttttcttaatcaattct 21882876  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    | |||||| |||||||||||||||||    
T  21882877 tcataaaatctctctagataaatagc 21882902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 8123758 - 8123666
Alignment:
Q  77 tattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatagc 168  Q
    |||||||||| || ||||||  |||||||||||||||||||| || ||||||||||| ||  |||  |||||||| |||||||||||||||||    
T  8123758 tattatctccattaatttccaacaaataacaaatttaattgactgagacattttcttgatcaattcatgataaaatctctctagataaatagc 8123666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 44601053 - 44600996
Alignment:
Q  99 caaataacaaatttaattgattgcgacattttcttat-atatttttgataaaaactct 155  Q
    |||||||||||||||||||||||  |||||||||||| | ||| ||||||||||||||    
T  44601053 caaataacaaatttaattgattgaaacattttcttatcaaattcttgataaaaactct 44600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 20125690 - 20125566
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    |||||||||||| || |||  |||||| |  || ||||||| |||| ||||| | ||| |||||||||||||||  ||  |||||||||| ||  ||| |    
T  20125690 tgtatttgctaatacctttctttaattacacaccattatcttctttaatttctgacaagtaacaaatttaattggctgacacattttcttgatcaattct 20125591  T
Q  143 tgataaaaactctctagataaatag 167  Q
    |||||||| ||||||||||||||||    
T  20125590 tgataaaacctctctagataaatag 20125566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 1632908 - 1632784
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    |||||||| |||||| |||  |||||| |  || |||| |||||||||||||||  |||||||||||||||||  ||| ||||||||||| ||| |||||    
T  1632908 tgtatttgttaacacgtttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaattagttgagacattttcttgata-atttt 1632810  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    ||||||||| ||||||||||||||||    
T  1632809 tgataaaaattctctagataaatagc 1632784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 18271928 - 18272060
Alignment:
Q  1 gatagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtca 100  Q
    |||||||||||||| ||||||||||       |||||||  |  |||||||||||||| |||  |||||| |  || |||| |||| |||||||||| ||    
T  18271928 gatagatatagtgacaaaatttatcaagaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacctccattgatttccgcca 18272027  T
Q  101 aataacaaatttaattgattgcgacattttctt 133  Q
    ||||||||||||||||| ||| || ||||||||    
T  18272028 aataacaaatttaattggttgagatattttctt 18272060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 45852942 - 45853065
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||| ||||||||||| | ||  ||||||||| |||||| |   ||||||| ||||||||||| ||| ||| ||||||| ||  ||| |    
T  45852942 tgtatttgctaacaccttttcttaattacatatcattatctcccttgattgcaagcaaataataaatttaattggttgagactttttcttgattaattct 45853041  T
Q  143 tgataaaaactctctagataaata 166  Q
    |||||||| |||| ||||||||||    
T  45853042 tgataaaatctctatagataaata 45853065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 26443049 - 26442960
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt 133  Q
    |||||||| |||||| |||| |||||| |  || |||| |||| |||||||||| ||||||||||||||||||| ||| ||| |||||||    
T  26443049 tgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaatttaattggttgagaccttttctt 26442960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 34905957 - 34905821
Alignment:
Q  33 ttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttct 132  Q
    ||||||| || ||||||||||||||| ||| |||||||    |  |||| ||||||||||||  | |||||||||||||||| ||  || ||||||||||    
T  34905957 ttttaagacagtgtatttgctaacacctttccttaattatacatcattacctcctttgatttttgacaaataacaaatttaactggctgagacattttct 34905858  T
Q  133 t-atatatttttgataaaaactctctagataaatagc 168  Q
    | ||  ||| ||||||||| || ||||||||||||||    
T  34905857 taatcaattcttgataaaatctatctagataaatagc 34905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 40840690 - 40840780
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaatag 167  Q
    |||| ||||||||||||||| ||||||| ||||||||||  |||  ||||||| || ||| || ||||||||||| |||||| ||||||||    
T  40840690 attacctcctttgatttccgccaaataataaatttaattagttgaaacatttttttgataaatatttgataaaaattctctaaataaatag 40840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 1713986 - 1714063
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattg 121  Q
    |||||||  ||||| ||||||||||||    || ||||||||| || ||||||| |||||||||||||||||||||||    
T  1713986 tgtatttattaacatattttcttaattatacacaattatctcccttaatttccgccaaataacaaatttaattgattg 1714063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 48897681 - 48897813
Alignment:
Q  37 aaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-at 135  Q
    |||||| | ||||||||||||  ||||||||||| |  || ||||| ||| ||||||| || |||||||||||||||| |   ||  ||||||| || ||    
T  48897681 aaggcagtctatttgctaacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaacttgctgaaacatttttttgat 48897780  T
Q  136 atatttttgataaaaactctctagataaatagc 168  Q
      ||| ||||||||| |||||||||||||||||    
T  48897781 taattcttgataaaatctctctagataaatagc 48897813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 10593524 - 10593591
Alignment:
Q  100 aaataacaaatttaattgattgcgacattttct-tatatatttttgataaaaactctctagataaata 166  Q
    |||||||||||||||||| ||| ||||||||||  ||| ||| ||||||||| ||||||| |||||||    
T  10593524 aaataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaata 10593591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 18734 - 18609
Alignment:
Q  44 tgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttt 142  Q
    ||||||||||||||||||| ||||||| |  || ||||||||| || |||| || |||||||||||||||||||| |  ||| ||||||| ||  ||| |    
T  18734 tgtatttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattgactaagactttttcttgatcaattct 18635  T
Q  143 tgataaaaactctctagataaatagc 168  Q
    | |||||| |||| ||||||||||||    
T  18634 taataaaatctctttagataaatagc 18609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 69967 - 70056
Alignment:
Q  78 attatctcctttgatttccgtcaaataacaaatttaattgattgcgacattttctt-atatatttttgataaaaactctctagataaata 166  Q
    ||||||||| |||||||||| | |||||||||||||||||  ||  || ||||||| ||  ||||| |||||||||||||||||||||||    
T  69967 attatctcccttgatttccggccaataacaaatttaattggctgaaaccttttcttgatcaattttagataaaaactctctagataaata 70056  T

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Target: scaffold0247 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 19259 - 19220
Alignment:
Q  75 actattatctcctttgatttccgtcaaataacaaatttaa 114  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  19259 actattacctcctttgatttccgtcaaataacaaatttaa 19220  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 27074 - 27180
Alignment:
Q  1 gatagatatagtgataaaatttatcnnnnnnnttttaaggcaatgtatttgctaacacattttcttaattgcgtactattatctcctttgatttccgtca 100  Q
    |||||||| ||||| ||||||||||       ||| ||| || |||||||| |||||| ||| ||||||| |   ||||||||||| |||||||||| ||    
T  27074 gatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaattacactctattatctcccttgatttccgcca 27173  T
Q  101 aataaca 107  Q
    |||||||    
T  27174 aataaca 27180  T

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