View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_1D_low_17 (Length: 295)

Name: NF4607_1D_low_17
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_1D_low_17
NF4607_1D_low_17
[»] chr6 (5 HSPs)
chr6 (122-222)||(24495097-24495197)
chr6 (20-92)||(34950877-34950946)
chr6 (20-92)||(481156-481233)
chr6 (46-92)||(3513412-3513458)
chr6 (46-92)||(13038953-13038999)
[»] scaffold0003 (1 HSPs)
scaffold0003 (122-222)||(86562-86662)
[»] chr5 (6 HSPs)
chr5 (122-222)||(18556795-18556895)
chr5 (1-92)||(5336793-5336892)
chr5 (11-92)||(31470228-31470314)
chr5 (21-92)||(1709309-1709377)
chr5 (46-92)||(24853913-24853959)
chr5 (46-92)||(27347064-27347110)
[»] chr4 (10 HSPs)
chr4 (1-127)||(40760440-40760572)
chr4 (20-92)||(13752738-13752807)
chr4 (1-92)||(51889602-51889701)
chr4 (11-92)||(45657516-45657602)
chr4 (46-92)||(53512782-53512828)
chr4 (46-92)||(4353078-4353124)
chr4 (46-92)||(40691000-40691046)
chr4 (51-92)||(53271344-53271385)
chr4 (46-92)||(47984527-47984573)
chr4 (46-92)||(52917512-52917558)
[»] chr7 (8 HSPs)
chr7 (1-88)||(35583071-35583166)
chr7 (20-84)||(113740-113801)
chr7 (20-92)||(15030627-15030696)
chr7 (46-92)||(26793822-26793868)
chr7 (46-92)||(38000713-38000759)
chr7 (21-92)||(7253313-7253389)
chr7 (1-92)||(41793167-41793263)
chr7 (46-92)||(24686764-24686810)
[»] chr3 (9 HSPs)
chr3 (1-92)||(47372778-47372877)
chr3 (32-92)||(18878094-18878154)
chr3 (20-88)||(48065384-48065449)
chr3 (46-92)||(49325328-49325374)
chr3 (20-92)||(44205725-44205802)
chr3 (20-92)||(30390202-30390278)
chr3 (33-92)||(21977893-21977952)
chr3 (33-92)||(22000324-22000383)
chr3 (46-92)||(22162521-22162567)
[»] chr1 (10 HSPs)
chr1 (21-92)||(14284674-14284742)
chr1 (20-92)||(29946349-29946418)
chr1 (46-92)||(7198047-7198093)
chr1 (33-84)||(7562613-7562664)
chr1 (46-92)||(5747866-5747912)
chr1 (50-92)||(12523736-12523778)
chr1 (20-92)||(30233221-30233289)
chr1 (1-42)||(30516432-30516473)
chr1 (3-92)||(39600236-39600321)
chr1 (46-92)||(43253206-43253252)
[»] chr2 (8 HSPs)
chr2 (40-92)||(15111318-15111370)
chr2 (19-91)||(5935849-5935926)
chr2 (46-92)||(16414985-16415031)
chr2 (46-92)||(18965424-18965470)
chr2 (46-88)||(31715490-31715532)
chr2 (46-92)||(43334158-43334204)
chr2 (51-92)||(16251803-16251844)
chr2 (46-91)||(32980719-32980764)
[»] chr8 (2 HSPs)
chr8 (20-91)||(24834652-24834728)
chr8 (46-92)||(42191265-42191311)
[»] scaffold0168 (1 HSPs)
scaffold0168 (46-92)||(17536-17582)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 24495097 - 24495197
Alignment:
Q  122 caccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggttgcagga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24495097 caccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggttacagga 24495196  T
Q  222 c 222  Q
    |    
T  24495197 c 24495197  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 34950877 - 34950946
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||    ||||||||| ||||||| ||||| |||||||||||||||| ||||||    
T  34950877 cacaccttcttctttctcctcta---caacgatgtatttccatcgttggcctttcatagaaagaggtctcttt 34950946  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 481156 - 481233
Alignment:
Q  20 cacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||||| |     ||||||| |||||||| ||| | |||||||||||||||||||||||    
T  481156 cacaccttcttctttctcctcttatcctctacaacgatgggtttccatcgttagcctttcatagaaagaggcctcttt 481233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 3513458 - 3513412
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  3513458 caacgatgtgtttccatcgttggcctttcatagaaagagacctcttt 3513412  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 13038953 - 13038999
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  13038953 caacgatgtgtttccatcgttggcctttcatacaaagaggcctcttt 13038999  T

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Target: scaffold0003 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 86562 - 86662
Alignment:
Q  122 caccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggttgcagga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  86562 caccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcaggggcgtgttaaggttacagga 86661  T
Q  222 c 222  Q
    |    
T  86662 c 86662  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 18556895 - 18556795
Alignment:
Q  122 caccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtacccctatcttgcgggggcgtgttaaggttgcagga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  18556895 caccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatatgacggtacccctatcttgcgggggcgtgttaaggttacagga 18556796  T
Q  222 c 222  Q
    |    
T  18556795 c 18556795  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5336892 - 5336793
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctcttat--------gcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  5336892 tcattttctcaaaaatagtcacaccttcttctttctcctcttatcctcttctgcaacgatgtgttttcatcgttggcctttcatagaaagaggcctcttt 5336793  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 31470314 - 31470228
Alignment:
Q  11 aaaaataatcacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||| |||||||||||||||||||||||||| | |     |||||||||||||||| |||||  ||||||||||||||||||||||    
T  31470314 aaaaaaaatcacaccttcttctttctcctcttctcctctacaacgatgtgtttccatcgttggcttttcatagaaagaggcctcttt 31470228  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 1709377 - 1709309
Alignment:
Q  21 acaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||||||||||||    ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  1709377 acaccttcttctttctcctcta---caacgatgtgtttccatcgttggcctttcatagaaagagacctcttt 1709309  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 24853959 - 24853913
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||| ||| ||||  |||||||||||||||||||||||    
T  24853959 caacgatgtgttttcatcgttgtcctttcatagaaagaggcctcttt 24853913  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 27347110 - 27347064
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||| |||||||||||| ||||  |||||||||||||||||||||||    
T  27347110 caaccatgtgtttccatcgttgacctttcatagaaagaggcctcttt 27347064  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 40760572 - 40760440
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctcttat--------gcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||| ||||  |||||||||||| |||||||| |    
T  40760572 tcattttctcaaaaatagtcacaccttcttctttctcctcttatcctcttctgcaacgatgtgtttccatcgttgacctttcatagaaataggcctctct 40760473  T
Q  93 tattccttagaggcgcccctgtgtctccccaccaa 127  Q
    | ||||||| ||  |||||||||||||||||||||    
T  40760472 tgttccttaaag--gcccctgtgtctccccaccaa 40760440  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 13752738 - 13752807
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||    ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  13752738 cacaccttcttctttctcctcta---caacgatgtgtttccatcgttggcctttcatagaaagagacctcttt 13752807  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 51889602 - 51889701
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctctta--------tgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||||||||  |||  |||||||| ||||||| ||||||    
T  51889602 tcattttctcaaaaatagtcacaccttcttctttctcctcttatcctcttctgcaacgatgtgtttccatcattgacctttcataaaaagaggtctcttt 51889701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 45657602 - 45657516
Alignment:
Q  11 aaaaataatcacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||| |||||||||||||||||||||||||| | |     |||||||||||||||||||||  |||||| ||||||| ||||||||    
T  45657602 aaaaaaaatcacaccttcttctttctcctcttcttctctacaacgatgtgtttccattgttgacctttcacagaaagatgcctcttt 45657516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 53512782 - 53512828
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  53512782 caacgatgtgtttccattgttggtctttcatacaaagaggcctcttt 53512828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 4353078 - 4353124
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  4353078 caacgatgtgtttccatcgttggcctttcatagaaagaggtctcttt 4353124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 40691046 - 40691000
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  40691046 caacgatgtgtttccatcgttggcctttcatagaaagagggctcttt 40691000  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 53271344 - 53271385
Alignment:
Q  51 atgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  53271344 atgtgtttccatcgttggcctttcatagaaagaggcctcttt 53271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 47984573 - 47984527
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  47984573 caacgatgtgttttcatcgttggtctttcatacaaagaggcctcttt 47984527  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 52917558 - 52917512
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||| |||||||||||| ||||| |||||||| ||||||||||||||    
T  52917558 caacaatgtgtttccatcgttggcctttcatacaaagaggcctcttt 52917512  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35583166 - 35583071
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctcttat--------gcaacgatgtgtttccattgttggactttcatagaaagaggcct 88  Q
    ||||||||||||||||| || |||||||||||||||||||||||        |||||||||||||||||| ||||| |||||||||||||||||||    
T  35583166 tcattttctcaaaaatagtctcaccttcttctttctcctcttatcctcttctgcaacgatgtgtttccatcgttggcctttcatagaaagaggcct 35583071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 113740 - 113801
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagag 84  Q
    ||||||||||||||||||||||    ||||||||||||||||| ||||| |||||||||||||||    
T  113740 cacaccttcttctttctcctcta---caacgatgtgtttccatcgttggcctttcatagaaagag 113801  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 15030696 - 15030627
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||    ||||||||||||||||| ||||| |||||||||||| |||| |||||    
T  15030696 cacaccttcttctttctcctcta---caacgatgtgtttccatcgttggtctttcatagaaataggcttcttt 15030627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 26793822 - 26793868
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  26793822 caacgatgtgtttccatcgttggcctttcatagaaagaggcctcttt 26793868  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 38000713 - 38000759
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  38000713 caacgatgtgtttccatcgttggcctttcatagaaagaggcctcttt 38000759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 7253389 - 7253313
Alignment:
Q  21 acaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||||||||||||||| |     |||||||||||||||| ||||| |||||||| ||| ||||||||||    
T  7253389 acaccttcttctttctcctcttatcctctagaacgatgtgtttccatcgttggcctttcatacaaaaaggcctcttt 7253313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 41793167 - 41793263
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||| ||   ||||||||||||||||||||||| | |     |||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  41793167 tcattttctcaaacatttgcacaccttcttctttctcctcttctcctccacaacgatgtgtttacatcgttggcctttcatacaaagaggcctcttt 41793263  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 24686810 - 24686764
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||    
T  24686810 caacgatgtgtttcaattgttggcctttcatagaaagagacctcttt 24686764  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47372877 - 47372778
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctcttat--------gcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| |||||||||||| |||||||||||||        |||||||||||||| ||| ||||  |||||||||||||||||||||||    
T  47372877 tcattttctcaaaaatagtcacaccttcttatttctcctcttatcctcttctgcaacgatgtgttttcatcgttgacctttcatagaaagaggcctcttt 47372778  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 18878094 - 18878154
Alignment:
Q  32 tttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  18878094 tttctcctcttctacaacgatgtgttttcatcgttggcctttcatagaaagaggcctcttt 18878154  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 48065384 - 48065449
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcct 88  Q
    ||||||||||||||||||||||    ||||||||||||||| | ||||| |||||||||||||||||||    
T  48065384 cacaccttcttctttctcctcta---caacgatgtgtttccgtcgttggcctttcatagaaagaggcct 48065449  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 49325374 - 49325328
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  49325374 caacgatgtgtttccatcgttggcctttcatagaaagaggcctcttt 49325328  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 44205802 - 44205725
Alignment:
Q  20 cacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||| | |     |||||||||||||||| ||||| |||||||| ||||||||||||||    
T  44205802 cacaccttcttctttctcctcttctcctctacaacgatgtgtttccatcgttggcctttcatacaaagaggcctcttt 44205725  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 30390202 - 30390278
Alignment:
Q  20 cacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||| | |     |||| ||||||||||| ||||| |||||||||||||||||||||||    
T  30390202 cacaccttcttctttctcctcttctcctctacaacg-tgtgtttccatcgttggtctttcatagaaagaggcctcttt 30390278  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 21977952 - 21977893
Alignment:
Q  33 ttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||| | | ||| ||||||||||||| ||||| |||||| ||||||||||||||||    
T  21977952 ttctcctcctctacaatgatgtgtttccatcgttggcctttcagagaaagaggcctcttt 21977893  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 22000383 - 22000324
Alignment:
Q  33 ttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||| | | ||| ||||||||||||| ||||| |||||| ||||||||||||||||    
T  22000383 ttctcctcctctacaatgatgtgtttccatcgttggcctttcagagaaagaggcctcttt 22000324  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 22162567 - 22162521
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||| ||| ||||| |||||| ||||||||||||||||    
T  22162567 caacgatgtgttttcatcgttggcctttcagagaaagaggcctcttt 22162521  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 14284674 - 14284742
Alignment:
Q  21 acaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||||||||||||    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  14284674 acaccttcttctttctcctcta---caacgatgtgtttccatcgttggcctttcatagaaagaggcctcttt 14284742  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29946418 - 29946349
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||    ||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  29946418 cacaccttcttctttctcctcta---caacgatgtgtttccatcgttggcctttcatagaaagatgcctcttt 29946349  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 7198093 - 7198047
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  7198093 caacgatgtgtttccatcgttggcctttcatagaaagaggcctcttt 7198047  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 7562664 - 7562613
Alignment:
Q  33 ttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagag 84  Q
    |||||||||| | ||||||||||||||||| ||||| |||||||||||||||    
T  7562664 ttctcctcttctacaacgatgtgtttccatcgttggcctttcatagaaagag 7562613  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 5747912 - 5747866
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  5747912 caacgatgtgtttccatcgttggcctttcatagaaaaaggcctcttt 5747866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 12523778 - 12523736
Alignment:
Q  50 gatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  12523778 gatgtgtttccatcgttggcctttcatagaaagaggcctcttt 12523736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 30233221 - 30233289
Alignment:
Q  20 cacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||||||||||||   | ||||||||||||||||| |||||  ||||||| ||||||||||||||    
T  30233221 cacaccttcttctttctcctc---tacaacgatgtgtttccatcgttggcatttcata-aaagaggcctcttt 30233289  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30516473 - 30516432
Alignment:
Q  1 tcattttctcaaaaataatcacaccttcttctttctcctctt 42  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  30516473 tcattttctcaaaaattgtcacaccttcttctttctcctctt 30516432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 39600236 - 39600321
Alignment:
Q  3 attttctcaaaaataatcacaccttcttctttctcctcttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||| ||||||||| ||||||| ||||||    |||||| | ||||||||||| |||||  |||| |||||||||||| ||||||||||    
T  39600236 attttttcaaaaatattcacaccctcttct----cctcttctacaacgatgtgtctccatcattggcctttcatagaaaaaggcctcttt 39600321  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 43253206 - 43253252
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||| |||||||||||| |||| ||||||||||||||| ||||||||    
T  43253206 caaccatgtgtttccatcgttgaactttcatagaaagatgcctcttt 43253252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 15111370 - 15111318
Alignment:
Q  40 cttatgcaacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  15111370 cttatgcaacgatgtgtttccatcgttggcctttcatagaaagaggcctcttt 15111318  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 5935926 - 5935849
Alignment:
Q  19 tcacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctctt 91  Q
    |||||||||||||||||||||||| | |     |||||||||||||||| ||||| ||||||||||||||||||||||    
T  5935926 tcacaccttcttctttctcctcttctcctctacaacgatgtgtttccatcgttggcctttcatagaaagaggcctctt 5935849  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 16414985 - 16415031
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||| |||||||||||| ||||| ||||||||||||||||| |||||    
T  16414985 caaccatgtgtttccatcgttggcctttcatagaaagaggcatcttt 16415031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 18965424 - 18965470
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||| |||||||||||| |||||  ||||||||||||||||||||||    
T  18965424 caaccatgtgtttccatcgttggtttttcatagaaagaggcctcttt 18965470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 31715532 - 31715490
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcct 88  Q
    |||||||||||||| || ||||| |||||||||||||||||||    
T  31715532 caacgatgtgtttctatcgttggcctttcatagaaagaggcct 31715490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 43334158 - 43334204
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||| ||||||||| || ||||| |||||||||||||||||||||||    
T  43334158 caacaatgtgtttctatcgttggcctttcatagaaagaggcctcttt 43334204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 16251844 - 16251803
Alignment:
Q  51 atgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    |||||||||||| ||||| ||||||||||||||||| |||||    
T  16251844 atgtgtttccatcgttggcctttcatagaaagaggcatcttt 16251803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 32980719 - 32980764
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctctt 91  Q
    |||| |||| ||||||| ||||| ||||||||||||||||||||||    
T  32980719 caacaatgtttttccatcgttggtctttcatagaaagaggcctctt 32980764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 24834652 - 24834728
Alignment:
Q  20 cacaccttcttctttctcctcttatgc-----aacgatgtgtttccattgttggactttcatagaaagaggcctctt 91  Q
    ||||||||||||||||||||||| | |     |||||||||||||||| ||||| |||||||| |||||||||||||    
T  24834652 cacaccttcttctttctcctcttctcctctacaacgatgtgtttccatcgttggtctttcatacaaagaggcctctt 24834728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 42191265 - 42191311
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  42191265 caacgatgtgttttcatcgttggcctttcatagaaagaggcctcttt 42191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 17536 - 17582
Alignment:
Q  46 caacgatgtgtttccattgttggactttcatagaaagaggcctcttt 92  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  17536 caacgatgtgtatccatcgttggcctttcatagaaagaggcctcttt 17582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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