View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607_1D_low_18 (Length: 272)
Name: NF4607_1D_low_18
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 40151579 - 40151829
Alignment:
| Q |
1 |
aaagttattggcatgaacaaccaagtcttatcatacgaagtgagattgacgaagttaatagcttacatttcaatatttnnnnnnnntggaaataaaaagg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40151579 |
aaaggtattggcatgaacaaccaagtcttatcatacgaagtgagatcgacaaagttaatagcttacatttcaatattttaaaaaaatggaaataaaaagg |
40151678 |
T |
|
| Q |
101 |
tattttgcaccgtataaatacaatgtcgtgtatgtatcgatattttgtatttagggtttagggatgcaattacataatgcaaaaatgtttcagacaccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40151679 |
tattttgcaccgtataaatacaatgtcgtgtatgtatcaatattttgtatttagggtttagggatgcaattacataatgcaaaaatgtttcagacaccta |
40151778 |
T |
|
| Q |
201 |
atttcttcatcaggttctcgaggtggttgttggtggtgttaggctgaccac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40151779 |
atttcttcatcaggttctcgaggtggttgttggtggtgttaggctgaccac |
40151829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University