View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_19 (Length: 271)
Name: NF4607_1D_low_19
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 32592484 - 32592718
Alignment:
| Q |
11 |
tctcaactttggttacattgttgtttcctaataaaggagcagctgaagatgatggaacgcttgcaataatattcagcaacacgaggatacaaaatgcaag |
110 |
Q |
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| T |
32592484 |
tctcaactttggttacattgttgtttcctaataaaggagcagctgaagatgatggaacacatgcaataatattcagcaacacgaggatacaaaatgcaag |
32592583 |
T |
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| Q |
111 |
caccatcaatttagtcattgctctaattatttgaacttccaatgaacctatggatgatgaataatattgcataaccttatagtggtatatataagaacca |
210 |
Q |
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| T |
32592584 |
caccatcaatttagtcattgctctaattatttgaacttccaatgaacctatggatgatg---aatattgcataaccttagagtggtatatataagaacca |
32592680 |
T |
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| Q |
211 |
tgcaagcaatttgatgatttctgatatcggccaacatg |
248 |
Q |
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| T |
32592681 |
tgcaagcaatttgatgatttctgatatcggccaacatg |
32592718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 32602646 - 32602876
Alignment:
| Q |
28 |
ttgttgtttcctaataaaggagcagctgaagatgatggaacgcttgcaataatattcagcaacacgaggatacaaaatgcaagcaccatcaatttagtca |
127 |
Q |
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| T |
32602646 |
ttgttgtttcctaataatcgagcagctgaagatgatggaacacttgcaataatattcagcaacatgaggatacaaaatgcaagcaccatcaatctagcca |
32602745 |
T |
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| Q |
128 |
ttgctctaattatttgaacttccaatgaacctatggat-------gatgaataatattgcataaccttatagtggtatatataag---aaccatgcaagc |
217 |
Q |
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| T |
32602746 |
ttgctctaattatttgaacttccaatgaacctatgaataatgaaggatgatgaatattgcataactttatagtggtatatataagaccaaccatgcaagc |
32602845 |
T |
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| Q |
218 |
aatttgatgatttctgatatcggccaacatg |
248 |
Q |
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| T |
32602846 |
aatttgatgatttctgacattggccaacatg |
32602876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 35125149 - 35125273
Alignment:
| Q |
30 |
gttgtttcctaataaaggagcagctgaagatgatggaacgcttgcaataatattcagcaacacgaggatacaaaatgcaagcaccatcaatttagtcatt |
129 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| ||||||||| |||| | ||| ||||| |||| |||||||||||| ||| |||| |
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| T |
35125149 |
gttggttcctaataaacgagcagctgaagatgatggaacacttgcaata---ttcactagcactaggatgtaaaacacaagcaccatcaccctagccatt |
35125245 |
T |
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| Q |
130 |
gctctaattatttgaacttccaatgaac |
157 |
Q |
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| T |
35125246 |
gctctaattatttgcacttccaatgaac |
35125273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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