View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_24 (Length: 247)
Name: NF4607_1D_low_24
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 42677755 - 42677651
Alignment:
| Q |
95 |
tcacatgaaactcaaaatttgttcttatagcctctgacattctcaaacttactttgatcaacaataagggttttgtgaacacgatcacgaaagtgtgatt |
194 |
Q |
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| T |
42677755 |
tcacatgaaactcaaaatttgttcttatagcctctgacattctcaaacttactttgatcaacaataagggttttgtgaacacgatcacgaaagtgtgatt |
42677656 |
T |
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| Q |
195 |
gatac |
199 |
Q |
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| T |
42677655 |
gatac |
42677651 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 42677258 - 42677183
Alignment:
| Q |
97 |
acatgaaactcaaaatttgttcttatagcctctgacattctcaa--acttactttgatcaacaataagggttttgt |
170 |
Q |
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| T |
42677258 |
acatgaaactcagaatttgttcatatagctactgaccttcttaaacacttcctttgatcaagaataagggctttgt |
42677183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 54704911 - 54704951
Alignment:
| Q |
102 |
aaactcaaaatttgttcttatagcctctgacattctcaaac |
142 |
Q |
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| T |
54704911 |
aaactcagaatttgttcctatagcctctgaccttctcaaac |
54704951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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