View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_1D_low_25 (Length: 242)

Name: NF4607_1D_low_25
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_1D_low_25
NF4607_1D_low_25
[»] chr5 (6 HSPs)
chr5 (1-221)||(258932-259152)
chr5 (28-176)||(244948-245097)
chr5 (28-176)||(29949612-29949761)
chr5 (28-176)||(29951250-29951399)
chr5 (129-192)||(23660931-23660994)
chr5 (129-192)||(23797576-23797639)
[»] chr3 (8 HSPs)
chr3 (28-176)||(47418486-47418635)
chr3 (28-177)||(25531660-25531810)
chr3 (28-176)||(16346659-16346808)
chr3 (28-176)||(5553223-5553372)
chr3 (28-176)||(5554301-5554450)
chr3 (28-176)||(23460227-23460376)
chr3 (50-176)||(16022684-16022811)
chr3 (50-120)||(47566559-47566629)
[»] chr2 (5 HSPs)
chr2 (28-176)||(18535812-18535961)
chr2 (28-176)||(24806794-24806943)
chr2 (28-176)||(22300406-22300555)
chr2 (84-176)||(24808706-24808799)
chr2 (84-176)||(22299715-22299808)
[»] scaffold0146 (1 HSPs)
scaffold0146 (31-176)||(31616-31762)
[»] scaffold0025 (1 HSPs)
scaffold0025 (28-176)||(54882-55031)
[»] chr7 (6 HSPs)
chr7 (28-176)||(23446687-23446836)
chr7 (28-176)||(9647445-9647594)
chr7 (28-176)||(40998729-40998878)
chr7 (72-184)||(29982597-29982709)
chr7 (29-176)||(7842701-7842849)
chr7 (51-119)||(41000611-41000679)
[»] chr4 (9 HSPs)
chr4 (28-176)||(15018150-15018299)
chr4 (28-176)||(15019790-15019939)
chr4 (28-176)||(13518470-13518619)
chr4 (28-176)||(39488660-39488809)
chr4 (50-176)||(9399151-9399278)
chr4 (139-192)||(19457609-19457662)
chr4 (139-192)||(19461008-19461061)
chr4 (129-181)||(19455904-19455956)
chr4 (139-192)||(19459310-19459363)
[»] chr8 (3 HSPs)
chr8 (50-176)||(17278207-17278333)
chr8 (36-176)||(8366132-8366273)
chr8 (36-176)||(17277434-17277575)
[»] chr1 (9 HSPs)
chr1 (28-176)||(36233333-36233482)
chr1 (28-176)||(36233866-36234015)
chr1 (50-176)||(48463887-48464013)
chr1 (28-176)||(24157563-24157712)
chr1 (129-192)||(48781145-48781208)
chr1 (84-176)||(20189363-20189456)
chr1 (102-177)||(20759127-20759202)
chr1 (28-177)||(48462829-48462979)
chr1 (28-176)||(20190940-20191089)
[»] scaffold0018 (1 HSPs)
scaffold0018 (84-176)||(650-743)
[»] scaffold0096 (1 HSPs)
scaffold0096 (92-176)||(22424-22509)
[»] scaffold0021 (2 HSPs)
scaffold0021 (84-176)||(17682-17775)
scaffold0021 (84-176)||(27213-27306)
[»] scaffold0013 (1 HSPs)
scaffold0013 (50-122)||(241126-241198)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 259152 - 258932
Alignment:
Q  1 gaagcatagtttgttcttgagcataaaagatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  259152 gaagcatagtttgttcttgagcataaaagatgaattgtagacaattctctaagctttccgtcgaatcaaatatcacgtcaattggacatctagagctcaa 259053  T
Q  101 gatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaatcaatgtct 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  259052 gatatagccgaaacaagacagaggtgacatcacttacaaaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaatcaatgtct 258953  T
Q  201 tttaaaggtcaagcatgttaa 221  Q
    |||||||||||||||||||||    
T  258952 tttaaaggtcaagcatgttaa 258932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 244948 - 245097
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  244948 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 245047  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  245048 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 245097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 29949761 - 29949612
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  29949761 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 29949662  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  29949661 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 29949612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 29951399 - 29951250
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  29951399 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 29951300  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  29951299 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 29951250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 23660994 - 23660931
Alignment:
Q  129 atcacttacaaaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaat 192  Q
    ||||| ||| ||||||| ||||  |||||||| ||||||||||| ||||||||||| |||||||    
T  23660994 atcacctacgaaaataatacttgaaaccaaaattaatttggttcattttattccattattaaat 23660931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 23797576 - 23797639
Alignment:
Q  129 atcacttacaaaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaat 192  Q
    ||||| ||| ||||||| ||||  |||||||| ||||||||||| ||||||||||| |||||||    
T  23797576 atcacctacgaaaataatacttgaaaccaaaattaatttggttcattttattccattattaaat 23797639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 47418486 - 47418635
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| |||| | ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  47418486 agatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 47418585  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  47418586 catgacctacgaaaataagactttgaacccaaaattaatttggttctttt 47418635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 25531810 - 25531660
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| |||||  ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||| ||||||||||||||  |      
T  25531810 agatgaaatgtagagaattccataagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagtcaaaacaagacagacatat 25531711  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttcttttt 177  Q
    ||| || ||| ||||||| |||| ||| |||||| ||||||||||||||||    
T  25531710 catgacctacgaaaataaaactttgaacccaaaattaatttggttcttttt 25531660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 16346808 - 16346659
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  16346808 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 16346709  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  16346708 catgacctacgaaaataagactttgaacccaaaattaatttggttctttt 16346659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 5553372 - 5553223
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| ||||||||||||||||||| |||  |      
T  5553372 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatat 5553273  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| | || ||| |||||| |||||||||||||||    
T  5553272 catgacctacgaaaataaaattttgaacccaaaattaatttggttctttt 5553223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 5554301 - 5554450
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   |||||| |||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  5554301 agatgaaatgtagagaatttcgtaagctatccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 5554400  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| | || ||| |||||| |||||||||||||||    
T  5554401 catgacctacgaaaataaaattttgaacccaaaattaatttggttctttt 5554450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 23460376 - 23460227
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||| ||| ||||||| |||||||||||||||||||||||  |      
T  23460376 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggatatccagagctccagatatagccaaaacaagacagacatat 23460277  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
     || || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  23460276 aatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 23460227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 16022684 - 16022811
Alignment:
Q  50 taagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacac- 148  Q
    ||||||||||| ||| | ||| | ||| ||||  ||||||| ||||||  |||||||||||||||||||||||  |  ||| || ||| ||||||| ||     
T  16022684 taagctttccaacgagttaaagaccacctcaaacggacatccagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaact 16022783  T
Q  149 ttcgaaccaaaactaatttggttctttt 176  Q
    || || |||||| |||||||||||||||    
T  16022784 ttggacccaaaattaatttggttctttt 16022811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 47566629 - 47566559
Alignment:
Q  50 taagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagaca 120  Q
    ||||||||||| ||||| ||| ||||| ||||| | ||||| | ||||| |||||||||||| ||||||||    
T  47566629 taagctttccaacgaattaaagatcacctcaatcgaacatccatagctccagatatagccaagacaagaca 47566559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 18535812 - 18535961
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| |||| | ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  18535812 agatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 18535911  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  18535912 catgacctacgaaaataagactttgaacccaaaattaatttggttctttt 18535961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 24806794 - 24806943
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  |||||||  |||||| |||||||||||||||||||||||  |      
T  24806794 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccggagctccagatatagccaaaacaagacagacatat 24806893  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||||||||||| |||| ||| |||||| |||||||||||||||    
T  24806894 catgacctacaaaaataaaactttgaacccaaaattaatttggttctttt 24806943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 22300406 - 22300555
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| |||||  ||||||||||| | | | ||| ||||| ||||  ||||||| |||||||  |||||||| |||||||||||||  |      
T  22300406 agatgaaatgtagagaattccgtaagctttccaacaagttaaagatcacctcaaacggacatccagagctccggatatagcaaaaacaagacagacatat 22300505  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  22300506 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 22300555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 24808706 - 24808799
Alignment:
Q  84 ggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    |||||||  |||||| |||||||||||||||||||||||  |  ||| || ||||||||||| |||| ||| |||||| |||||||||||||||    
T  24808706 ggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttctttt 24808799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 22299808 - 22299715
Alignment:
Q  84 ggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||||||| | ||||| |||||||| ||||||||||||||  |  ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  22299808 ggacatccaaagctccagatataggcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 22299715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 31762 - 31616
Alignment:
Q  31 tgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacat 130  Q
    |||| |||||| |||| | ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |  |||    
T  31762 tgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 31663  T
Q  131 cacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
     || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  31662 gacctacgaaaataagactttgaacccaaaattaatttggttctttt 31616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 55031 - 54882
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| |||| | ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| ||||||||| |||||||||||||  |      
T  55031 agatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagcgaaaacaagacagacatag 54932  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  54931 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 54882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 23446836 - 23446687
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  23446836 agatgaaatgtagagaatttggtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 23446737  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  23446736 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 23446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 9647445 - 9647594
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   |||| |||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  9647445 agatgaaatgtagagaatttcgtaagttttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 9647544  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  9647545 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 9647594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 40998729 - 40998878
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| |||| | ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||| ||||||||  |      
T  40998729 agatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaataagacagacatat 40998828  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| | || ||| |||||| |||||||||||||||    
T  40998829 catgacctacgaaaataaaattttgaacccaaaattaatttggttctttt 40998878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 29982709 - 29982597
Alignment:
Q  72 atcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaaccaaaactaatttggtt 171  Q
    ||||| ||||||||||||||||||||  | |||||   ||||||||||| | ||| |||| |||| |||||||||||||  |||||||  ||||||||||    
T  29982709 atcacatcaattggacatctagagcttcaaatataattaaaacaagacaaaagtgtcatcgcttataaaaataacactttcaaccaaatttaatttggtt 29982610  T
Q  172 ctttttattccat 184  Q
    |||| ||| ||||    
T  29982609 ctttgtatcccat 29982597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 7842849 - 7842701
Alignment:
Q  29 gatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgac 128  Q
    ||||||||||| | ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| ||||||| ||||||||| |||||  |  |    
T  7842849 gatgaattgtatagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctctagatataaccaaaacaaaacagacatatc 7842750  T
Q  129 atcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
     | || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  7842749 ttgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 7842701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 41000611 - 41000679
Alignment:
Q  51 aagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagac 119  Q
    |||||||||| ||| | | | ||||| ||||  ||||||| ||||||| ||||||||||||||||||||    
T  41000611 aagctttccaacgagttagagatcacctcaaacggacatccagagctccagatatagccaaaacaagac 41000679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 15018150 - 15018299
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  15018150 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 15018249  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  15018250 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 15018299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 15019790 - 15019939
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  15019790 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 15019889  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  15019890 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 15019939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 13518470 - 13518619
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   |||| |||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  13518470 agatgaaatgtagagaatttcgtaagttttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 13518569  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  13518570 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 13518619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 39488660 - 39488809
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||||||| || ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||||||||||| |||||||||||||| ||||||||  |      
T  39488660 agatgaattgtggagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatctagagctccagatatagccaaaataagacagacatat 39488759  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| ||||| |||||||||    
T  39488760 catgacctacgaaaataaaactttgaacccaaaattaattaggttctttt 39488809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 9399151 - 9399278
Alignment:
Q  50 taagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacact 149  Q
    ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| | |||||||||||||||||||||  |  ||| || ||| ||||||| |||    
T  9399151 taagctttccaacgagttaaagatcacctcaaacggacatccagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaact 9399250  T
Q  150 tcgaa-ccaaaactaatttggttctttt 176  Q
    | ||| |||||| |||||||||||||||    
T  9399251 ttgaacccaaaattaatttggttctttt 9399278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 19457662 - 19457609
Alignment:
Q  139 aaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaat 192  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||    
T  19457662 aaaataacactttgaaccaaaattaatttggttcattttattccattattaaat 19457609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 19461008 - 19461061
Alignment:
Q  139 aaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaat 192  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||    
T  19461008 aaaataacacttagaaccaaaattaatttggttcattttattccattattaaat 19461061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 19455956 - 19455904
Alignment:
Q  129 atcacttacaaaaataacacttcgaaccaaaactaatttggttctttttattc 181  Q
    ||||| ||||||||||||||||  |||||||| ||||||||||| ||||||||    
T  19455956 atcacctacaaaaataacacttgaaaccaaaattaatttggttcattttattc 19455904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 19459363 - 19459310
Alignment:
Q  139 aaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaat 192  Q
    |||||||||||| |||||||||||||| ||||||   ||||||||| |||||||    
T  19459363 aaaataacacttggaaccaaaactaatgtggttcacgttattccattattaaat 19459310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 17278207 - 17278333
Alignment:
Q  50 taagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacact 149  Q
    |||||||||||  || | ||| ||||| ||||  ||||||||||||||| |||||||||||||||||||||||  |  ||| |||||| |||||||   |    
T  17278207 taagctttccaatgagttaaagatcacctcaaacggacatctagagctccagatatagccaaaacaagacagacatatcatgacttacgaaaataaactt 17278306  T
Q  150 tcgaaccaaaactaatttggttctttt 176  Q
    | || |||||| |||||||||||||||    
T  17278307 tggacccaaaattaatttggttctttt 17278333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 8366273 - 8366132
Alignment:
Q  36 tgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcactt 135  Q
    |||||| |||||  ||||||||| | ||| | ||| ||||| ||||  ||||||| ||||||| | |||||||||||||||||||||  |  ||| || |    
T  8366273 tgtagagaattccgtaagctttcaaacgagttaaagatcacctcaaacggacatccagagctccaaatatagccaaaacaagacagacatatcatgacct 8366174  T
Q  136 acaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    || ||||||| |||| ||| |||||| |||||||||||||||    
T  8366173 acgaaaataaaactttgaacccaaaattaatttggttctttt 8366132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 17277575 - 17277434
Alignment:
Q  36 tgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcactt 135  Q
    |||||| |||||  |||||||||||  || | ||| ||||| ||||  ||||||| ||||||| ||||||||||||||||||||| |  |  ||| || |    
T  17277575 tgtagagaattccgtaagctttccaatgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacatacatatcatgacct 17277476  T
Q  136 acaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    |||||||||| |||| ||| |||||| ||||||| |||||||    
T  17277475 acaaaaataaaactttgaacccaaaattaatttgattctttt 17277434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 36233482 - 36233333
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||| | ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  36233482 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 36233383  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  36233382 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 36233333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 36233866 - 36234015
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||| | ||||  ||||||| ||||||| |||||||||||||||||||||||  |      
T  36233866 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatatagccaaaacaagacagacatat 36233965  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  36233966 catgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 36234015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 48463887 - 48464013
Alignment:
Q  50 taagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacact 149  Q
    ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||||||||||||||||  |  ||| || ||||||||||| | |    
T  48463887 taagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaatt 48463986  T
Q  150 tcgaaccaaaactaatttggttctttt 176  Q
    |  | |||||| || ||||||||||||    
T  48463987 tgaacccaaaattattttggttctttt 48464013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 24157563 - 24157712
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||| ||||||||| |||||||||||||  |      
T  24157563 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagctaaaacaagacagacatat 24157662  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| ||||| |||||||||    
T  24157663 catgacctacgaaaataaaactttgaacccaaaattaattaggttctttt 24157712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 48781208 - 48781145
Alignment:
Q  129 atcacttacaaaaataacacttcgaaccaaaactaatttggttctttttattccatgattaaat 192  Q
    ||||| |||||||||||||||| |||||||||  ||| |||||| ||||||||||| |||||||    
T  48781208 atcacctacaaaaataacacttggaaccaaaatcaatgtggttcattttattccattattaaat 48781145  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 20189363 - 20189456
Alignment:
Q  84 ggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcg-aaccaaaactaatttggttctttt 176  Q
    ||||||| ||| ||| |||||||||||||||||||||||  |  ||| || ||| ||||||| |||| | |||||||| |||||||||||||||    
T  20189363 ggacatccagaactccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaattaatttggttctttt 20189456  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 20759202 - 20759127
Alignment:
Q  102 atatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaaccaaaactaatttggttcttttt 177  Q
    ||||||||||||||||||| |  |  ||| || ||| ||||||| |||| ||||||||| ||||||||||||||||    
T  20759202 atatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaaccaaaattaatttggttcttttt 20759127  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 48462979 - 48462829
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   ||||||||||| ||| | ||| ||||| ||||  ||| ||| ||||||| | ||||||||||||||||||| |  |      
T  48462979 agatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacatcaaacggatatccagagctccaaatatagccaaaacaagacatacatat 48462880  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttcttttt 177  Q
    ||| || ||||||||||| |||| ||| | |||| ||||||| ||||||||    
T  48462879 catgacctacaaaaataaaactttgaatctaaaattaatttgattcttttt 48462829  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 20190940 - 20191089
Alignment:
Q  28 agatgaattgtagacaattctctaagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacagaggtga 127  Q
    ||||||| |||||| ||||   |||||||||||  || | ||| ||||| ||||  ||||||| | ||||| |||||||| ||||||||||||||  |      
T  20190940 agatgaaatgtagataatttagtaagctttccaaagagttaaagatcacctcaaacggacatccaaagctccagatatagtcaaaacaagacagacatat 20191039  T
Q  128 catcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||| || ||| ||||||| |||| ||| |||||| ||||| |||||||||    
T  20191040 catgacatacgaaaataaaactttgaacccaaaattaattaggttctttt 20191089  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 650 - 743
Alignment:
Q  84 ggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    |||||||  |||||| |||||||||||||||||||||||  |  ||| || ||||||||||| |||| ||| |||||| |||||||||||||||    
T  650 ggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttctttt 743  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 22509 - 22424
Alignment:
Q  92 agagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||||||| |||||||||||||||||||||||  |  ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  22509 agagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 22424  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 17775 - 17682
Alignment:
Q  84 ggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||||||| ||||||| ||||||||||||||||||||| |  |  ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  17775 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 17682  T

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Target: scaffold0021; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 27306 - 27213
Alignment:
Q  84 ggacatctagagctcaagatatagccaaaacaagacagaggtgacatcacttacaaaaataacacttcgaa-ccaaaactaatttggttctttt 176  Q
    ||||||| ||||||| ||||||||||||||||||||| |  |  ||| || ||| ||||||| |||| ||| |||||| |||||||||||||||    
T  27306 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 27213  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 241198 - 241126
Alignment:
Q  50 taagctttccatcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccaaaacaagacaga 122  Q
    ||||||||||| ||| | ||| ||||| ||||  ||||||| ||||||  |||||||||||||||||||||||    
T  241198 taagctttccaacgagttaaagatcacctcaaacggacatccagagcttcagatatagccaaaacaagacaga 241126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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