View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_26 (Length: 241)
Name: NF4607_1D_low_26
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 12171211 - 12171428
Alignment:
| Q |
14 |
ttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaa |
113 |
Q |
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| T |
12171211 |
ttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaa |
12171310 |
T |
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| Q |
114 |
ctgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgatt |
211 |
Q |
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| T |
12171311 |
ctgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgatt |
12171410 |
T |
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| Q |
212 |
ctttcctatgatgtccat |
229 |
Q |
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||||||||||||||||| |
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| T |
12171411 |
atttcctatgatgtccat |
12171428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 12415639 - 12415856
Alignment:
| Q |
14 |
ttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaa |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
12415639 |
ttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaa |
12415738 |
T |
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| Q |
114 |
ctgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgatt |
211 |
Q |
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|||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12415739 |
ctgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgatt |
12415838 |
T |
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| Q |
212 |
ctttcctatgatgtccat |
229 |
Q |
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||||||||||||||||| |
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| T |
12415839 |
atttcctatgatgtccat |
12415856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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