View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_29 (Length: 236)
Name: NF4607_1D_low_29
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4411299 - 4411075
Alignment:
| Q |
1 |
aaaagctcaaaattctagctctaagtaccaactctactagaaaacatccaaagatgtcaaaatccgttctacacatcagaaatcaattttttccatgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4411299 |
aaaagctcaaaattctagctctaagtaccaactctactagaaaacatccaaagatgtcaaaatccgttctacacatcagaaatcaattttttccatgttc |
4411200 |
T |
|
| Q |
101 |
aagagtgaaaccagcagacatatactaacgcaatcaggaccgtaaacggttttacgaaaaccaaatgaatgtaatgtaatctaagtggttagcaatgtac |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4411199 |
aagagtgaaaccagcagacatatactaacgcaatcaggaccataaacggttttacgaaaaccaaatgaatgtaatgtaatctaagtggttagcaatgtac |
4411100 |
T |
|
| Q |
201 |
catctgtagaagcatcacgagttga |
225 |
Q |
| |
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||||||||||||||||| ||||||| |
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| T |
4411099 |
catctgtagaagcatcaagagttga |
4411075 |
T |
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