View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_3 (Length: 571)
Name: NF4607_1D_low_3
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 974539 - 975072
Alignment:
| Q |
16 |
aggagcattgatagtgtaccaaacttgaactttagtttgcaatacattttaggagaaagggatgagagggtcacttgagacttgccctatgttgtgttgt |
115 |
Q |
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| T |
974539 |
aggagcattgatagtgtaccaaacttgaactttagtttgcaatacattttaggagaaagggatgagagggtcacttgagacttgccctatgttgtgttgt |
974638 |
T |
|
| Q |
116 |
atcttataaaggaaatgaggacaattacttgtgcctttttaactgcatgcctatttcttcgtatcttcacaagaaaaagagtttctttcttacaccattt |
215 |
Q |
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| T |
974639 |
atcttataaaggaaatgaggacaattacttgtgcctttttaactgcatgcctatttcttcgtatcttcacaagaaaaagagtttctttcttacaccattt |
974738 |
T |
|
| Q |
216 |
gccattccacactcaattcaatcacatgttttgtgtgcaaaaaactttttctannnnnnnccaaatttaaagggaaaatagcatgtgatggataaggatc |
315 |
Q |
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| T |
974739 |
gccattccacactcaattcaatcacatgttttgtgtgcaaaaaactttttctatttttttccaaatttaaagggaaaatagcatgtgatggataaggatc |
974838 |
T |
|
| Q |
316 |
aatcatgttaggggtcggccactcaaactaaacgtcacgcatctagctatttttaaagatgagacaaaattaatgatagttaatacttgtaattttagta |
415 |
Q |
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| T |
974839 |
aatcatgttaggggtcggccactcaaactaaacgtcacgcatctagctatttttaaagatgagacaaaattaatgatagttaatacttgtaattttagta |
974938 |
T |
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| Q |
416 |
taatcaccattgctacaatcacgatcaaataacaaaatggttttcttaattcagaattgtggctacaaattacatattttttgtcttaggttagtaatga |
515 |
Q |
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| T |
974939 |
taatcaccattgctacaatcacgatcaaataacaaaatggttttcttaattcagaattgtggctacaaattacatattttttgtcttaggttagtaatga |
975038 |
T |
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| Q |
516 |
taatacagagtttgtccgagaggtagataaaggt |
549 |
Q |
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| T |
975039 |
taatacagagtttgtccgagaggtagataaaggt |
975072 |
T |
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