View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_1D_low_37 (Length: 210)

Name: NF4607_1D_low_37
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_1D_low_37
NF4607_1D_low_37
[»] chr5 (6 HSPs)
chr5 (1-136)||(42677924-42678059)
chr5 (132-190)||(43242354-43242412)
chr5 (19-122)||(42677765-42677868)
chr5 (79-123)||(42677318-42677362)
chr5 (132-171)||(22757674-22757713)
chr5 (9-52)||(42677260-42677303)
[»] chr7 (2 HSPs)
chr7 (132-190)||(38829278-38829336)
chr7 (132-190)||(4994501-4994558)
[»] chr6 (2 HSPs)
chr6 (132-190)||(7430744-7430802)
chr6 (132-171)||(34296060-34296099)
[»] chr2 (1 HSPs)
chr2 (132-190)||(20590119-20590177)
[»] chr1 (2 HSPs)
chr1 (132-190)||(2331906-2331964)
chr1 (132-190)||(45308305-45308362)
[»] chr4 (1 HSPs)
chr4 (132-190)||(38979798-38979855)
[»] scaffold0525 (1 HSPs)
scaffold0525 (132-190)||(10162-10219)
[»] scaffold0546 (1 HSPs)
scaffold0546 (132-171)||(9702-9741)
[»] scaffold0109 (1 HSPs)
scaffold0109 (132-171)||(3566-3605)
[»] chr8 (1 HSPs)
chr8 (132-170)||(22381192-22381230)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42677924 - 42678059
Alignment:
Q  1 ttcttgtgatagtgtcgctttgcttctgggtatttttacttcttaaatttatgactatttctttctttaaatttggtaatgattttctgaaagcatattt 100  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42677924 ttcttgtgatagtgtctctttacttctgggtatttttacttcttaaatttatgactatttctttctttaaatttggtaatgattttctgaaagcatattt 42678023  T
Q  101 tatttatcctcccttctttactgtttctggtgttga 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  42678024 tatttatcctcccttctttactgtttctggtgttga 42678059  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 43242354 - 43242412
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43242354 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 43242412  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 42677765 - 42677868
Alignment:
Q  19 tttgcttctgggtatttttacttcttaaatttatgactattt-ctttctttaaatttggtaatgattttctgaaagcatattttatttatcctcccttct 117  Q
    |||| |||| ||||||||||||| ||||||| | |||| ||| |||||||||  |||| ||||||||||| ||||| ||||||||||  |||||||||||    
T  42677765 tttgtttctaggtatttttacttattaaattca-gacttttttctttctttacgtttgataatgattttcagaaagtatattttattactcctcccttct 42677863  T
Q  118 ttact 122  Q
    |||||    
T  42677864 ttact 42677868  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 42677318 - 42677362
Alignment:
Q  79 atgattttctgaaagcatattttatttatcctcccttctttactg 123  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||    
T  42677318 atgattttctgaaagtatattttatttatcttcccttctttactg 42677362  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 22757674 - 22757713
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaa 171  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  22757674 gttgaattaggtttagaaaagaaaagagagaagtcagaaa 22757713  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 42677260 - 42677303
Alignment:
Q  9 atagtgtcgctttgcttctgggtatttttacttcttaaatttat 52  Q
    ||||| || |||||||||| ||||||||||||||||||||||||    
T  42677260 atagtatctctttgcttctaggtatttttacttcttaaatttat 42677303  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 38829336 - 38829278
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38829336 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 38829278  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 4994558 - 4994501
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4994558 gttgaattaggtttagaaaagaaaagggagaagttagaaagag-gagagaaactgtttt 4994501  T

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Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 7430802 - 7430744
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7430802 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 7430744  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 34296060 - 34296099
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaa 171  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  34296060 gttgaattaggtttagaaaagaaaagagagaagtcagaaa 34296099  T

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Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 20590119 - 20590177
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20590119 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 20590177  T

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Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 2331906 - 2331964
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2331906 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 2331964  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 45308362 - 45308305
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  45308362 gttgaattaggtttagaaaagaaaagggagaagttagaaagag-gagagaaactgtttt 45308305  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 38979798 - 38979855
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  38979798 gttgaattaggtttagaaaagaaaagggagaagttagaaagag-gagagaaactgtttt 38979855  T

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Target: scaffold0525 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 10219 - 10162
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaagagtcagagaaactgtttt 190  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  10219 gttgaaataggtttagaaaaaaaaagggagaagttagaaagagtcag-gaaactgtttt 10162  T

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Target: scaffold0546 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 9702 - 9741
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaa 171  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  9702 gttgaattaggtttagaaaagaaaagagagaagtcagaaa 9741  T

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Target: scaffold0109 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 3605 - 3566
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaaa 171  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  3605 gttgaattaggtttagaaaagaaaagagagaagtcagaaa 3566  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 22381230 - 22381192
Alignment:
Q  132 gttgaattaggtttagaaaagaaaagggagaagttagaa 170  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  22381230 gttgaattaggtttagaaaagaaaagtgggaagttagaa 22381192  T

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