View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_38 (Length: 210)
Name: NF4607_1D_low_38
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 42709373 - 42709225
Alignment:
| Q |
26 |
acccttcaaagttaatctttacgactctccaatgtttcttaagctcaattcagtctttagctgttgccttcgccatagcaagggacattcagcactggaa |
125 |
Q |
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| T |
42709373 |
acccttcaaagttaatctttacgactctccaatgtttattaagctcaattcagtctttagctgttgccttcgccatagaaagggacattcagcactggaa |
42709274 |
T |
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| Q |
126 |
attgggttggaacgtcaccttcctcgatatagcctattgtgtaatcctc |
174 |
Q |
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| T |
42709273 |
attgggttggaacgtcaccttcctcgctatagcctattgtgtaatcctc |
42709225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 43623294 - 43623446
Alignment:
| Q |
22 |
gactacccttcaaagttaatctttacgactctccaatgtttcttaagctcaattcagtctttagctgttgccttcgccatagcaagggacattcagcact |
121 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||| |||| | |
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| T |
43623294 |
gactacccttcaaagttgagctttacgactctccaatgtttcttaagctcaattcaatctttagctattgccttggccatagaaagggacattgagcagt |
43623393 |
T |
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| Q |
122 |
ggaaattgggttggaacgtcaccttcctcgatatagcctattgtgtaatcctc |
174 |
Q |
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||||||||||||||||||||| | |||||| ||||||||||||||||| |||| |
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| T |
43623394 |
ggaaattgggttggaacgtcagcctcctcgctatagcctattgtgtaaacctc |
43623446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 38765750 - 38765786
Alignment:
| Q |
49 |
actctccaatgtttcttaagctcaattcagtctttag |
85 |
Q |
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| T |
38765750 |
actcttcaatgtttcttaagctcaattcagtctttag |
38765786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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