View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_1D_low_39 (Length: 209)

Name: NF4607_1D_low_39
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_1D_low_39
NF4607_1D_low_39
[»] chr6 (12 HSPs)
chr6 (2-199)||(16780075-16780272)
chr6 (2-190)||(16796064-16796252)
chr6 (2-183)||(17068404-17068585)
chr6 (2-190)||(16986355-16986543)
chr6 (2-190)||(16869063-16869251)
chr6 (2-190)||(16656913-16657101)
chr6 (2-183)||(16786868-16787049)
chr6 (17-183)||(16842719-16842885)
chr6 (8-116)||(18807348-18807456)
chr6 (8-167)||(18874294-18874453)
chr6 (49-94)||(16911258-16911303)
chr6 (49-94)||(16916462-16916507)
[»] scaffold0133 (3 HSPs)
scaffold0133 (2-199)||(16953-17150)
scaffold0133 (2-190)||(11753-11941)
scaffold0133 (2-183)||(7381-7562)
[»] scaffold0256 (1 HSPs)
scaffold0256 (2-190)||(8058-8246)
[»] chr3 (2 HSPs)
chr3 (2-190)||(38940428-38940616)
chr3 (5-190)||(7054341-7054526)
[»] scaffold0144 (3 HSPs)
scaffold0144 (2-190)||(34965-35153)
scaffold0144 (2-190)||(36391-36579)
scaffold0144 (8-167)||(2892-3051)
[»] chr2 (1 HSPs)
chr2 (3-183)||(20153344-20153523)
[»] chr8 (1 HSPs)
chr8 (2-180)||(13376990-13377168)
[»] scaffold0511 (1 HSPs)
scaffold0511 (8-167)||(8251-8410)
[»] scaffold0230 (1 HSPs)
scaffold0230 (8-117)||(3570-3679)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 16780075 - 16780272
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||| ||    
T  16780075 ttcttgccaatcaaattagcttttcttgcatcctcttcattcaacactttctgaaggcctttgatgtgtagcttgcctcctaattgcaagttgtgtagct 16780174  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgatgtccatctc 199  Q
    | | ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||    
T  16780175 ctgctaaaccaaacccattttttgaaccaacaatgaaagtagtcaatgttttcagacaagttaactccccaattctaaaaggagttgatgtcaatctc 16780272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 16796064 - 16796252
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| |||||||||||| ||||| ||||||||||  ||||||||||||| |||| ||||||||| |||||||||||||| ||    
T  16796064 ttcttgccaatcaaattagcttttctagcatcctcctcatttaacacattctcaaggcctttgatgtatagcctgcctcctaattgtaagttgtgtagct 16796163  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | |||||||||||||||||||||| |||| |||||| |||||||||||| ||||  ||  |||||||||||||||||||| ||||||    
T  16796164 ctgctaaaccaaacccagtttttgaatcaactatgaaattggtcaatgtttgcagactagataactccccaattctaaaaggagttgat 16796252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 17068404 - 17068585
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||| ||| |||||||| | ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||    
T  17068404 ttcttgccattcaaattagcttttttagcatcctcttctttcgacacattctgaaggcctttgatgtgtagcttgcctcctaattgtaagttttgtagct 17068503  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaagg 183  Q
    | | ||||||| | |||||||||||| |||| |||||| |||||||||||||||||  ||| ||||||||||||||||||||    
T  17068504 ctgctaaaccataaccagtttttgaatcaactatgaaattggtcaatgttttcagactagttaactccccaattctaaaagg 17068585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 16986355 - 16986543
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||| ||||||| |||||||||| |||||||||||| |||  |||||||||  ||||||||||||| |||||||||||||| |||||||||||||| ||    
T  16986355 ttctttccaatcaaattagcttctttagcatcctctttatttgacacattctcaaggcctttgatgtatagcttgcctcctaattgtaagttgtgtagct 16986454  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | ||||||||||||||||| | ||||||| |||||| ||||||||||||||| | |||| ||||||| |||||||||||| ||||||    
T  16986455 ctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactccctaattctaaaaggagttgat 16986543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 16869251 - 16869063
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||| ||||||| |||||||||||||||||| ||||| ||| |||||||||  || |||||||||| |||||||||||||| |||||| ||||||| ||    
T  16869251 ttctttccaatcaaattagcttctctagcatcatcttcgttcgacacattctcaagacctttgatgtatagcttgcctcctaattgtaacttgtgtagct 16869152  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | ||||||||||||||||||||||||||| |||||| |||||||||||| ||||  ||| ||||| |||||||| ||||| ||||||    
T  16869151 ctgctaaaccaaacccagtttttgaaccaaccatgaaattggtcaatgtttgcagactagttaactctccaattctgaaaggagttgat 16869063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 16656913 - 16657101
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| |||||||||||| ||| |  |||||||||  ||||||||||||| |||||||||||||| |||||||||||||| ||    
T  16656913 ttcttgccaatcaaattagcttttctagcatcctcctcaattgacacattctcaaggcctttgatgtatagcttgcctcctaattgtaagttgtgtagct 16657012  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | ||||||||||||||||| | ||||||| ||||||  | |||||||||  |||  ||| |||||||||||| ||||||| ||||||    
T  16657013 ctgctaaaccaaacccagtttctaaaccaactatgaaatagttcaatgtttggagactagttaactccccaattttaaaaggagttgat 16657101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 16786868 - 16787049
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||| |||||||||| |||||||||| | |||||||  ||| ||||||||||||| || ||||||| || || ||||  || ||    
T  16786868 ttcttgccaatcaaattagcgtctctagcatgctcttcattcgatacattctcaaggactttgatgtgtagatttcctcctaattataggttgcatagct 16786967  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaagg 183  Q
    | | ||||||| | |||||||||||| ||||||||||| ||| | ||||||||||| ||||||||| ||||||| |||||||    
T  16786968 cggctaaaccataaccagtttttgaatcaacaatgaaaatggaccatgttttcagacaagtgaacttcccaattttaaaagg 16787049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 16842719 - 16842885
Alignment:
Q  17 ttagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcagttaaaccaaacc 116  Q
    ||||||||||||||||||  |||||||  |||||| |  ||||||||||||||||| ||||||| ||||| |||||| |||| ||| | |||||||||||    
T  16842719 ttagcttctctagcatccctttcattcgtcacattttcaaggcctttgatgtgtagtttgcctcttagttctaagttatgtagctctgctaaaccaaacc 16842818  T
Q  117 cagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaagg 183  Q
    |||  | |||||  ||||||||| || |||||||| |||||  ||| ||| |||||||| |||||||    
T  16842819 cagcctctgaacgtacaatgaaaatgctcaatgttctcagatgagttaaccccccaattttaaaagg 16842885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 18807456 - 18807348
Alignment:
Q  8 ccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcagtta 107  Q
    ||||||| |||||||||| ||||||||  |||| |  | |||||||  |||||| ||||||||||||||||||||||||||||||  |||||||| | ||    
T  18807456 ccaatcaaattagcttctttagcatcccattcactagatacattctcaaggcctctgatgtgtagcttgcctcctagttgtaagtcatgtaactctgcta 18807357  T
Q  108 aaccaaacc 116  Q
    |||||||||    
T  18807356 aaccaaacc 18807348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 18874453 - 18874294
Alignment:
Q  8 ccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcagtta 107  Q
    ||||||| |||||||||| ||||||||  |||| |  | |||||||  |||||| ||||||||||||||||||||||||||| ||  |||||||  | ||    
T  18874453 ccaatcaaattagcttctttagcatcccattcactagatacattctcaaggcctctgatgtgtagcttgcctcctagttgtaggtcatgtaactgtgcta 18874354  T
Q  108 aaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaact 167  Q
    |||||||||| |  || ||  | |||||||||||| |||| ||||| ||| |||| ||||    
T  18874353 aaccaaaccccgccttcgattccacaatgaaagtgctcaaagttttgagacaagttaact 18874294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 16911303 - 16911258
Alignment:
Q  49 attctggaggcctttgatgtgtagcttgcctcctagttgtaagttg 94  Q
    |||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  16911303 attctgaaggcctttgatgtgtaggttgtctcctggttgtaagttg 16911258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 16916507 - 16916462
Alignment:
Q  49 attctggaggcctttgatgtgtagcttgcctcctagttgtaagttg 94  Q
    |||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  16916507 attctgaaggcctttgatgtgtaggttgtctcctggttgtaagttg 16916462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 16953 - 17150
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| | | ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||||||||||||| ||    
T  16953 ttcttgccaatcaaattagcttgttttgcatcctcttcattcgacactttctgaaggcctttgatgtgtagcttgcctcctaattgtaagttgtgtagct 17052  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgatgtccatctc 199  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |||||| |||||    
T  17053 ctactaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagacaagttaactccccaattctgaaaggagtagatgtcaatctc 17150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 11753 - 11941
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| ||| |||||||||||| || |||| ||||| |||||||| ||||||||||| ||||||| |||||||||||||| ||    
T  11753 ttcttgccaatcaaattagcttttcttgcatcctcttcaatcgacactttctgaaggcctttaatgtgtagctttcctcctaattgtaagttgtgtagct 11852  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||| ||||||    
T  11853 ctgctaaaccaaacccagtttttgaaccaacaatgaaaatggtcaatgttttcagacaagttaactccccaattttaaaaggagttgat 11941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 7381 - 7562
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||| |||||||||  || | |||||||||||||||||||||||  ||||||||||||| ||    
T  7381 ttcttgctaatcaaattagtttctctagcatcctcttcgttcgacacattctcaagacatttgatgtgtagcttgcctcctaactgtaagttgtgtagct 7480  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaagg 183  Q
      | ||||||| |||||||||||||||||||||||||| | ||||||||||||||   ||| |||| |||||||||||||||    
T  7481 gtgctaaaccatacccagtttttgaaccaacaatgaaaatcgtcaatgttttcaggctagttaactgcccaattctaaaagg 7562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 8058 - 8246
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| ||| ||||||||||||||  |||| || || |||| ||||||||||||||||||||||| ||||||||| |||| ||    
T  8058 ttcttgccaatcaaattagcttttcttgcatcctcttcatttgacactttgtgaaggcgtttgatgtgtagcttgcctcctaattgtaagttttgtagct 8157  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | ||||||| |||||||||||||||||||||||||| |||||||| |||||| | |||| |||||||||||||||||||| ||||||    
T  8158 ctgctaaaccatacccagtttttgaaccaacaatgaaaatggtcaattttttcaaacaagttaactccccaattctaaaaggagttgat 8246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 38940616 - 38940428
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| ||| |||||||||| |||| | || || || ||||||||||| |||||||||||||||| |||||||||||||| ||    
T  38940616 ttcttgccaatcaaattagcttttcttgcatcctctttattcgagactttttgaaggcctttgatatgtagcttgcctcctaattgtaagttgtgtagct 38940517  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | ||||||||| |||||||||||||||||||||||| |||||||| |||||| | |||| |||||||||||||||||||| ||||||    
T  38940516 ctgctaaaccaaaaccagtttttgaaccaacaatgaaaatggtcaattttttcaaacaagttaactccccaattctaaaaggagttgat 38940428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 7054526 - 7054341
Alignment:
Q  5 ttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcag 104  Q
    |||||||||| ||||||||||||||||||| | || ||  |||||||||  |||||| ||||||| ||| ||||||||| |||||||||||||||||| |    
T  7054526 ttgccaatcaaattagcttctctagcatccccgtcgttggacacattctcaaggcctctgatgtgaagcatgcctcctaattgtaagttgtgtaactctg 7054427  T
Q  105 ttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
     ||||||||||||||||||||| ||||||||||||  |||||||||||||||| |||| ||||||||||||||||| || ||||||    
T  7054426 ctaaaccaaacccagtttttgatccaacaatgaaaacggtcaatgttttcagacaagttaactccccaattctaaagggagttgat 7054341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 34965 - 35153
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| ||| |||| |||||||||||| |||| | |||||||||  ||||| ||||||| |||||||||||||| |||||||||||||| ||    
T  34965 ttcttgccaatcaaatttgcttttctagcatcctcctcatccgacacattctcaaggccattgatgtatagcttgcctcctaattgtaagttgtgtagct 35064  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | |||||||||| |||||| ||||||||| |||||| ||||||||||||||| | |||| |||||||||||||||||||| ||||||    
T  35065 ctgctaaaccaaactcagtttctgaaccaactatgaaattggtcaatgttttcaaacaagttaactccccaattctaaaaggagttgat 35153  T

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Target: scaffold0144; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 36391 - 36579
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||||||||||| |||||||| |||||||||||| |||||  |||||||||  ||||||||||||| || ||||||||||| |||||||||||||| ||    
T  36391 ttcttgccaatcaaattagcttttctagcatcctcctcatttgacacattctcaaggcctttgatgtataacttgcctcctaattgtaagttgtgtagct 36490  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaaggggttgat 190  Q
    | | ||||| ||| ||| |||||||| |||| |||||| ||||||||||||  |||  ||| |||||||||||| ||||||| ||||||    
T  36491 ctgctaaacgaaaaccaatttttgaatcaactatgaaattggtcaatgtttggagactagttaactccccaattttaaaaggagttgat 36579  T

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Target: scaffold0144; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 3051 - 2892
Alignment:
Q  8 ccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcagtta 107  Q
    ||||||| |||||||||| ||||||||  |||| |  |||||||||  |||||||||||||||||||||||||||| ||||||||   ||||||| | ||    
T  3051 ccaatcaaattagcttctttagcatcccattcacttgacacattctcaaggcctttgatgtgtagcttgcctcctaattgtaagtcacgtaactctgcta 2952  T
Q  108 aaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaact 167  Q
    |||| |||||  | || ||||| || ||||||||| |||||||||| ||| |||| ||||    
T  2951 aaccgaaccccatcttcgaacccacgatgaaagtgctcaatgtttttagacaagttaact 2892  T

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Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 20153344 - 20153523
Alignment:
Q  3 tcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactc 102  Q
    |||||| ||||| |||| || ||||||||| |||||||||  ||||||||| ||||| |||||||| |||||| ||||||| |||||| |||| || |||    
T  20153344 tcttgctaatcaaattatctcctctagcatactcttcatttgacacattcttgaggcttttgatgtatagctttcctcctaattgtaacttgtttagctc 20153443  T
Q  103 agttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaaagg 183  Q
       ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  20153444 ttctaaaccatacc-agtttttgaaccaacaatgaaagtggtcaatgttttcagacaagttaactccccaattctaaaagg 20153523  T

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Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 13376990 - 13377168
Alignment:
Q  2 ttcttgccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaact 101  Q
    ||||| ||||||| |||||||||| |||||||| |||| ||  |||||||||| |||||| |||||||||| || ||||||| ||||||||| || | ||    
T  13376990 ttctttccaatcaaattagcttctttagcatccccttcgtttgacacattctgaaggcctctgatgtgtagttttcctcctaattgtaagttttgcagct 13377089  T
Q  102 cagttaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaactccccaattctaaa 180  Q
    ||| ||||||||||||| |||  || |||||||||||| ||||||||||||||||| |||| |||||||  ||||||||    
T  13377090 cagctaaaccaaacccaatttccgagccaacaatgaaaatggtcaatgttttcagacaagttaactccctgattctaaa 13377168  T

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Target: scaffold0511 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 8251 - 8410
Alignment:
Q  8 ccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcagtta 107  Q
    ||||||| |||||||||| ||||||||  |||| |  | |||||||  |||||| ||||||||||||||||||||||||||||||  |||||||| | ||    
T  8251 ccaatcaaattagcttctttagcatcccattcactagatacattctcaaggcctctgatgtgtagcttgcctcctagttgtaagtcatgtaactctgcta 8350  T
Q  108 aaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagagaagtgaact 167  Q
    |||||||||| |  ||  |||| |||||||||||| | || ||||| ||| |||| ||||    
T  8351 aaccaaaccccgccttcaaacccacaatgaaagtgcttaaagttttgagacaagttaact 8410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 3570 - 3679
Alignment:
Q  8 ccaatcatattagcttctctagcatcctcttcattcaacacattctggaggcctttgatgtgtagcttgcctcctagttgtaagttgtgtaactcagtta 107  Q
    ||||||| |||||||||| ||||||||  |||| |  | |||||||  |||||||||||||||||| ||||||||||||||||||  | |||||| | ||    
T  3570 ccaatcaaattagcttctttagcatcccattcactagatacattctcaaggcctttgatgtgtagcctgcctcctagttgtaagtcatttaactctgcta 3669  T
Q  108 aaccaaaccc 117  Q
    ||||||||||    
T  3670 aaccaaaccc 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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