View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607_1D_low_4 (Length: 568)
Name: NF4607_1D_low_4
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 23 - 558
Target Start/End: Complemental strand, 6686489 - 6685954
Alignment:
| Q |
23 |
ttatcatggaaaatttgttcaatttaagccaaggaggaggaccaaagatctgtgtacgtccgataacaaccagttctaattgcttagaatctgatcatat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6686489 |
ttatcatggaaaatttgttcaatttaagccaaggaggaggaccaaagatctgtgtacgtctgataacaaccagttctaattgcttagaatctgatcatat |
6686390 |
T |
|
| Q |
123 |
tattattggtagaactgatgagaaaatgaagatggtaagcatgctgcttgaacaagactccaatgttaatgttatttcctctgttgctattgttggtctt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6686389 |
tattattggtagaactgatgagaaaatgaagatggtaagcatgttgcttgaacaagactccaatgttaatgttatttcctctgttgctattgttggtctt |
6686290 |
T |
|
| Q |
223 |
tgtggtatatataggcaagaccactcttgctcaaatggtgtacaatgatgctaaggtcaaaggcttatttgaaaaccaagtttggtttcatgtttcttac |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6686289 |
ggtggtatatataggcaagactactcttgctcaaatggtgtacaatgatgctaaggtcaaaggcttatttgaaaaccaagtttggtttcatgtttcttac |
6686190 |
T |
|
| Q |
323 |
tcattcaatgtccaagcttttgcgaagcaaatcttacaagctttatttggagatgatatcaatgatcaacaagaaccattcgaacaacacttgcttcttc |
422 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
6686189 |
tcattcgatatccaagcttttgcgaagcaaatcttacaagctttatttggagatgatatcaatgatcaacgagaaccattcgaacaacactcgcttcttg |
6686090 |
T |
|
| Q |
423 |
ttcgttacaaggtatttgttggtgttggacgatgtctgaaacttgacttgtgaaaaatggaatcaactcacaagttctttgatgtgtggggtggcttgcg |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6686089 |
ttcgttacaaggtatttgttggtgttggacgatgtatgaaacttgacttgtgaaaaatggaatcaactcacaagttctttgatgtgtggggtggcttgcg |
6685990 |
T |
|
| Q |
523 |
aaactaagatttctattgacaactcgttgtagaatt |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6685989 |
aaactaagatttctattgacaactcgttgtagaatt |
6685954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University