View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_1D_low_44 (Length: 201)

Name: NF4607_1D_low_44
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_1D_low_44
NF4607_1D_low_44
[»] chr4 (9 HSPs)
chr4 (25-126)||(32015169-32015270)
chr4 (9-116)||(10395953-10396060)
chr4 (4-126)||(29235144-29235266)
chr4 (4-116)||(53469685-53469797)
chr4 (4-116)||(53472574-53472684)
chr4 (4-88)||(13816928-13817012)
chr4 (1-63)||(9010892-9010954)
chr4 (20-109)||(27272572-27272661)
chr4 (5-64)||(50887483-50887541)
[»] chr5 (4 HSPs)
chr5 (21-100)||(26896582-26896661)
chr5 (5-90)||(32796352-32796437)
chr5 (5-116)||(19670656-19670767)
chr5 (5-64)||(32795614-32795673)
[»] chr1 (5 HSPs)
chr1 (9-116)||(22840959-22841066)
chr1 (9-109)||(22827066-22827166)
chr1 (15-125)||(24272743-24272853)
chr1 (4-90)||(24284808-24284894)
chr1 (27-116)||(22826664-22826753)
[»] chr8 (3 HSPs)
chr8 (127-189)||(12171366-12171428)
chr8 (127-189)||(12415794-12415856)
chr8 (4-125)||(33897195-33897316)
[»] chr2 (3 HSPs)
chr2 (14-106)||(10128496-10128588)
chr2 (4-109)||(37965519-37965625)
chr2 (4-90)||(8761230-8761317)
[»] chr7 (4 HSPs)
chr7 (9-116)||(7961767-7961874)
chr7 (15-130)||(1716647-1716762)
chr7 (6-77)||(1103145-1103216)
chr7 (5-115)||(11269943-11270053)
[»] chr6 (10 HSPs)
chr6 (9-116)||(2921874-2921981)
chr6 (9-102)||(13558021-13558114)
chr6 (4-128)||(14721694-14721817)
chr6 (8-64)||(27340687-27340743)
chr6 (8-64)||(27401427-27401483)
chr6 (5-64)||(11678826-11678885)
chr6 (33-116)||(13556036-13556119)
chr6 (22-115)||(22880002-22880095)
chr6 (22-115)||(22898117-22898210)
chr6 (12-90)||(2923216-2923295)
[»] chr3 (3 HSPs)
chr3 (4-116)||(30046403-30046516)
chr3 (1-130)||(31141386-31141514)
chr3 (5-116)||(25889610-25889721)
[»] scaffold0007 (1 HSPs)
scaffold0007 (30-100)||(260213-260283)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 32015169 - 32015270
Alignment:
Q  25 aataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctatagttgatatt 124  Q
    |||||||||| ||||||||||||||||| | ||||||||||| ||| |||||| |||||||||||| | ||||||||| |||||| |||||| |||||||    
T  32015169 aataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctgatatt 32015268  T
Q  125 ac 126  Q
    ||    
T  32015269 ac 32015270  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 10395953 - 10396060
Alignment:
Q  9 atgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttt 108  Q
    ||||| |||||| ||||| | ||||||||||||||||||| ||||||||||||||| || || |||||| |||||||||||||| ||||||||| ||||     
T  10395953 atgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggtta 10396052  T
Q  109 tcctatag 116  Q
    | ||||||    
T  10396053 tgctatag 10396060  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 29235266 - 29235144
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgt-atttcttgcatctatagttagt 102  Q
    ||||||| ||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| || |||||| || |||||||||| | |||||| ||    
T  29235266 ggaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaatagttcgt 29235167  T
Q  103 aggttttcctatagttgatattac 126  Q
     |||||| ||||||||| ||||||    
T  29235166 -ggttttgctatagttggtattac 29235144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 53469797 - 53469685
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagta 103  Q
    ||||||||| | ||||| || |||| |||||||||||||||||||||| |||||||||||| |  || |||||| |||||||||| ||| |||||||||     
T  53469797 ggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgaatcaatagttagtg 53469698  T
Q  104 ggttttcctatag 116  Q
    | |||| ||||||    
T  53469697 gattttactatag 53469685  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 53472684 - 53472574
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagta 103  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||| | ||| |||||| ||||||| |||| | || ||||||     
T  53472684 ggaaaatgttccacatcggataatacgaagaaatatgcaaagactt-gccatataaataaaag-tttgtgtgttagtatttcatgcaccaatggttagtg 53472587  T
Q  104 ggttttcctatag 116  Q
    |||||| ||||||    
T  53472586 ggttttgctatag 53472574  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 13816928 - 13817012
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttg 88  Q
    |||||| ||| ||||||| |||||| |||||||||||| ||||||||| ||||||||||||| | |||||||||  |||||||||    
T  13816928 ggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttattatttcttg 13817012  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9010954 - 9010892
Alignment:
Q  1 ttaggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataa 63  Q
    ||||||| |||||||||||||||  ||| |||||||||||| | |||||||||||||||||||    
T  9010954 ttaggaatatgtcccacatcggatgatatgaagaaatatgctatgacttggccatataaataa 9010892  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 27272572 - 27272661
Alignment:
Q  20 cggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggtttt 109  Q
    |||| |||| ||||||||||||||||  |||| |||||||||||| |  || |||||| |||||||||||| | ||||||||| ||||||    
T  27272572 cggataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttt 27272661  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 50887541 - 50887483
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaa 64  Q
    ||||||||||| ||||| | |||| ||| |||||||||||| ||||||||||||||||||    
T  50887541 gaaaatgtcccgcatcgaataatatgaa-aaatatgcaaaggcttggccatataaataaa 50887483  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 26896582 - 26896661
Alignment:
Q  21 ggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||  |||||||    
T  26896582 ggagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgcattaatagtta 26896661  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 32796437 - 32796352
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgca 90  Q
    |||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||| || || |||||| ||||| ||||||    
T  32796437 gaaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgca 32796352  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 19670656 - 19670767
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtag 104  Q
    ||||||||| |||||  || |||| |||||||||||||||| ||| | |||||||||||| || || |||||| ||||| |||| | | ||||||||| |    
T  19670656 gaaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtgg 19670755  T
Q  105 gttttcctatag 116  Q
    ||||| ||||||    
T  19670756 gttttgctatag 19670767  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 32795673 - 32795614
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaa 64  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| | ||||| ||||||    
T  32795673 gaaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaa 32795614  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 22840959 - 22841066
Alignment:
Q  9 atgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttt 108  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| |||| ||||||| || || |||||| |||||||||||| | ||||||||| |||||    
T  22840959 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 22841058  T
Q  109 tcctatag 116  Q
    | ||||||    
T  22841059 tactatag 22841066  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 22827166 - 22827066
Alignment:
Q  9 atgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttt 108  Q
    ||||||||||||||| |||| ||||||||||||||||  |||| |||||||||||| || || ||||||  ||||||||||| | ||||||||| |||||    
T  22827166 atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttt 22827067  T
Q  109 t 109  Q
    |    
T  22827066 t 22827066  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 24272743 - 24272853
Alignment:
Q  15 cacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctat 114  Q
    ||||||| ||| || ||||||||||||||||||||| | ||||| |||||||| || |||||| |||||||||||| | |||||||||  ||||| ||||    
T  24272743 cacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaatagttagtgagttttactat 24272842  T
Q  115 agttgatatta 125  Q
    || | ||||||    
T  24272843 agcttatatta 24272853  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 24284808 - 24284894
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgca 90  Q
    |||||| |||||||||| ||||||| ||| ||||||||||| | ||||| |||||||||||||| || ||||||  |||||||||||    
T  24284808 ggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgca 24284894  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 22826753 - 22826664
Alignment:
Q  27 taggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctatag 116  Q
    |||||| |||| ||||||| ||||| |||||||||||| || ||||||||| |||||||||||| | ||||||||| | |||| ||||||    
T  22826753 taggaaaaaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatag 22826664  T

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Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 12171366 - 12171428
Alignment:
Q  127 ctctggcactccaataaatgtgagttcttgttttcactggtgattctttcctatgatgtccat 189  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12171366 ctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatgatgtccat 12171428  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 12415794 - 12415856
Alignment:
Q  127 ctctggcactccaataaatgtgagttcttgttttcactggtgattctttcctatgatgtccat 189  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12415794 ctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatgatgtccat 12415856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 33897195 - 33897316
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagta 103  Q
    ||||||||||| | |||  | |||||||||||||||| ||||| ||| | ||||||||||| |  || |||||| |||||| || || | ||| ||||||    
T  33897195 ggaaaatgtccaatatcatataataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttacaccaataattagta 33897294  T
Q  104 ggttttcctatagttgatatta 125  Q
    ||||||  ||||||| ||||||    
T  33897295 ggttttgttatagtttatatta 33897316  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 10128496 - 10128588
Alignment:
Q  14 ccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggt 106  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||||||||| |  || |||||| |||||||||||| | |||||||||||||    
T  10128496 ccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtaggt 10128588  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 37965625 - 37965519
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaat-aaaggctttatgtgtttgtatttcttgcatctatagttagt 102  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||  |||||||| |||| |||| |||||| |||||||||||| | ||||||| |    
T  37965625 ggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaatagttaat 37965526  T
Q  103 aggtttt 109  Q
     ||||||    
T  37965525 gggtttt 37965519  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 8761317 - 8761230
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagac-ttggccatataaataaaggctttatgtgtttgtatttcttgca 90  Q
    ||||||||||||||||| || |||| ||||||||||||||| || |||| |||||||||||| |  || |||||| ||||||||||||    
T  8761317 ggaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgca 8761230  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 7961767 - 7961874
Alignment:
Q  9 atgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttt 108  Q
    ||||||||||||| | |||| ||||||||||||||||  |||| |||||||||||| || || |||||| |||||||||||| | ||||||||| |||||    
T  7961767 atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 7961866  T
Q  109 tcctatag 116  Q
    | ||||||    
T  7961867 tgctatag 7961874  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 1716762 - 1716647
Alignment:
Q  15 cacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctat 114  Q
    ||||||| |||||| ||| ||||||| ||||||||| |||||||||||||||  || ||||||  ||||||||||||| |||||||||  |||||  |||    
T  1716762 cacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaatagttagtgagtttttttat 1716663  T
Q  115 agttgatattacctct 130  Q
    || || ||||||||||    
T  1716662 agctggtattacctct 1716647  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 1103145 - 1103216
Alignment:
Q  6 aaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtt 77  Q
    |||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| || || ||||||    
T  1103145 aaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtt 1103216  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 11269943 - 11270053
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtag 104  Q
    ||||||||||||||||||| |||| ||||||||||  |||   |||| |||||||||||| || || |||||| |||||  ||||| | ||||||||| |    
T  11269943 gaaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtgg 11270042  T
Q  105 gttttcctata 115  Q
    ||||| |||||    
T  11270043 gttttgctata 11270053  T

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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 2921981 - 2921874
Alignment:
Q  9 atgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttt 108  Q
    ||||| ||||||||| |||| |||||||||||||| |||||||  ||||||||||| |  ||||||||| |||||||||||| | ||||||||| |||||    
T  2921981 atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttt 2921882  T
Q  109 tcctatag 116  Q
    | ||||||    
T  2921881 tgctatag 2921874  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 13558114 - 13558021
Alignment:
Q  9 atgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagt 102  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||| || || |||||| ||||||| |||| | |||||||||    
T  13558114 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagt 13558021  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 14721694 - 14721817
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagta 103  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| || || | | |  |||||||||||| | ||||||| |     
T  14721694 ggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttataagtatttcttgcagcaatagttaatg 14721792  T
Q  104 ggttttcctatagttgatattacct 128  Q
    ||||||  ||||  |||||||||||    
T  14721793 ggttttgttatatctgatattacct 14721817  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 27340743 - 27340687
Alignment:
Q  8 aatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaa 64  Q
    |||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||||    
T  27340743 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaa 27340687  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 27401483 - 27401427
Alignment:
Q  8 aatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaa 64  Q
    |||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||||    
T  27401483 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaa 27401427  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 11678826 - 11678885
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaa 64  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||| ||| ||||||||    
T  11678826 gaaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaa 11678885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 13556119 - 13556036
Alignment:
Q  33 gaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctatag 116  Q
    ||||||||||||| ||||| |||||||||||| || || |||||| |||||||||||| | ||||||| | |||||| ||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatag 13556036  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 22880095 - 22880002
Alignment:
Q  22 gagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctata 115  Q
    |||||||| |||||||||  ||| |||||| |||||||||||||| ||| ||||||  ||||||||||| | ||| ||||| |||||| |||||    
T  22880095 gagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcaccaataattagtgggttttgctata 22880002  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 22898210 - 22898117
Alignment:
Q  22 gagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtaggttttcctata 115  Q
    |||||||| |||||||||  ||| |||||| |||||||||||||| ||| ||||||  ||||||||||| | ||| ||||| |||||| |||||    
T  22898210 gagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttgcaccaataattagtgggttttgctata 22898117  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 2923295 - 2923216
Alignment:
Q  12 tcccacatcggagaataggaagaaatatgc-aaagacttggccatataaataaaggctttatgtgtttgtatttcttgca 90  Q
    |||||||||||| |||| |||||||||||| |||| ||||| |||||||||||| |  || |||||| ||| ||||||||    
T  2923295 tcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgca 2923216  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 30046403 - 30046516
Alignment:
Q  4 ggaaaatgtcccacatcggagaataggaagaaa--tatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttag 101  Q
    |||||||||| || |||||| |||| ||| |||  |||||||||||||| ||||||||||||| ||||| |||||| |||||||||| | | ||||||||    
T  30046403 ggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttgta-caatagttag 30046501  T
Q  102 taggttttcctatag 116  Q
    | |||||| ||||||    
T  30046502 tcggttttgctatag 30046516  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31141386 - 31141514
Alignment:
Q  1 ttaggaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagtta 100  Q
    |||| |||| ||| |||||| ||||||||||||||||||||||||| || |||||||||||||| |  ||  ||||| ||||||||| || | ||||| |    
T  31141386 ttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaatagtaa 31141485  T
Q  101 gtaggttttcctatagttgatattacctct 130  Q
    ||| | ||| ||||| ||| ||||||||||    
T  31141486 gtaag-tttgctataattggtattacctct 31141514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 25889610 - 25889721
Alignment:
Q  5 gaaaatgtcccacatcggagaataggaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagttagtag 104  Q
    ||||||||||||||||||| || | |||||  |||||||||  |||| |||||||||||| |  || | |||| |||||||||||| | ||||||||| |    
T  25889610 gaaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtgg 25889709  T
Q  105 gttttcctatag 116  Q
    ||||| ||||||    
T  25889710 gttttgctatag 25889721  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 260283 - 260213
Alignment:
Q  30 gaagaaatatgcaaagacttggccatataaataaaggctttatgtgtttgtatttcttgcatctatagtta 100  Q
    |||||||||||||||||||| | || |||||||||  | || |||||| |||||||||||| | |||||||    
T  260283 gaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaatagtta 260213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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