View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_7 (Length: 465)
Name: NF4607_1D_low_7
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 28 - 443
Target Start/End: Original strand, 4411664 - 4412079
Alignment:
| Q |
28 |
tcgagtatggtgttagtagtttttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatttcatgctgc |
127 |
Q |
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| T |
4411664 |
tcgagaatgctgatagtagtctttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatttcatgctgc |
4411763 |
T |
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| Q |
128 |
tactgagctcgatccacaaatacatgcgcactttgctgtcaaaacggtttctcaactatataaggacttgagagagaggattagcaaacatattctttcc |
227 |
Q |
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| T |
4411764 |
tactgagctcgatccacaaatacacgcgcactttgctgtcaaaacggtttctcgactatataaggacttgagagagaggattagcaaacatattctttcc |
4411863 |
T |
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| Q |
228 |
atgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaacagttgaaaa |
327 |
Q |
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| T |
4411864 |
atgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaacagttgaaaa |
4411963 |
T |
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| Q |
328 |
ggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatccgtaagtatt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4411964 |
ggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatccgtaagtatt |
4412063 |
T |
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| Q |
428 |
atctataatcaaacat |
443 |
Q |
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|||||||||||||||| |
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| T |
4412064 |
atctataatcaaacat |
4412079 |
T |
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