View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607_1D_low_8 (Length: 425)
Name: NF4607_1D_low_8
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 4 - 401
Target Start/End: Complemental strand, 51303513 - 51303119
Alignment:
| Q |
4 |
gagtttggtgttcttggcgatatcggaaccttatgtgtttgggtggtgaattttggtctttacatcttctgacttgtaacataaaaatttgattgaaagc |
103 |
Q |
| |
|
|||||||||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51303513 |
gagtttggtgatcttggcgacatcagaatcttatgtgtttgggtggtgaatcttggtctttacatcgtctgacttgtaacataaaaatttgattgaaagc |
51303414 |
T |
|
| Q |
104 |
attgcaatcagcctttctccttcttcttcttctgttgttacaactaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgg |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51303413 |
attgtaatcagcctttctccttcttcttttgctgtt---acaactaacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtgg |
51303317 |
T |
|
| Q |
204 |
gtggaagttgtcatggttctccaatcaaaaccgggtttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccagg |
303 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51303316 |
atggaagttgtcttggttctccaattaaaaccgggtttggtggagtcttgcgtgctgatgcaggtatattccttttgtgcttctttagttgcattccagg |
51303217 |
T |
|
| Q |
304 |
ctcatatgacatcttgccaggtgagatttttgctatctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
401 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
51303216 |
ttcatatgacatcttgctaggtgagatttttgttatctatcacgggttgatcatggcaaaggatttgggatatgtcgaccttgtttgatattctgatt |
51303119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 401
Target Start/End: Complemental strand, 5204485 - 5204089
Alignment:
| Q |
4 |
gagtttggtgttcttggcgatatcggaaccttatgtgtttgggtggtgaattttggtctttacatcttctgacttgtaacat-aaaaatttgattgaaag |
102 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| || ||||||| ||||||||| |
|
|
| T |
5204485 |
gagtttggtggtcttggcgacatcgaaaccttatgtgtttgggtggtgaaacttggtctttacatcgcctggcttgtaagatcaaaaattcgattgaaag |
5204386 |
T |
|
| Q |
103 |
cattgcaatcagcctttctccttcttcttcttctgttgttacaactaacaggtacatcagatgg-aacgataacaatttttcaggtgctattcttaatgt |
201 |
Q |
| |
|
||||| ||||| | ||| | ||||| |||||| | ||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5204385 |
cattgtaatcaactattcac---cttctgcttctgcttttacaactaacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgt |
5204289 |
T |
|
| Q |
202 |
gggtggaagttgtcatggttctccaatcaaaaccgggtttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattcca |
301 |
Q |
| |
|
|| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
5204288 |
ggatggaagttgccacggttctcctatcaaaaccgggtttggtggagtcttgcgtactcatgcaggtatattcctttcaggcttctctagttggattcca |
5204189 |
T |
|
| Q |
302 |
ggctcatatgacatcttgccaggtgagatttttgctatctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
401 |
Q |
| |
|
|| ||| |||||||||||| |||||| ||| |||||||||||||| | |||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
5204188 |
ggttcagatgacatcttgctaggtgatctttctgctatctatcacgggctgatcatggcaaaggatttgggatatgcagaactttcttgctattctgatt |
5204089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 401
Target Start/End: Original strand, 38224309 - 38224563
Alignment:
| Q |
147 |
ctaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggtttggtgg |
246 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||| ||| |||| |||| |||| || | ||| | |||||||| |
|
|
| T |
38224309 |
ctaacaggtacatcagatggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctattagaacttgatttggtgg |
38224408 |
T |
|
| Q |
247 |
agtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgctatctatcac |
346 |
Q |
| |
|
||||||||| | ||| ||||||||||| || | | |||||| ||| ||||||||| |||| |||||||||| |||| ||| | |||||||||| |
|
|
| T |
38224409 |
agtcttgcgcaatgactcaggtatattcattgcgggtttctctggtttcattccaggatcatttgacatcttgttgactgagctttctattatctatcac |
38224508 |
T |
|
| Q |
347 |
gagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
401 |
Q |
| |
|
| ||||||||| ||||||||||| ||| | | ||||||||||| ||||||| |
|
|
| T |
38224509 |
aatctgatcatggagaaggatttgggttatacaaagcttgtttgctactctgatt |
38224563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 393
Target Start/End: Original strand, 38945495 - 38945747
Alignment:
| Q |
142 |
tacaactaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggttt |
241 |
Q |
| |
|
|||| |||||| |||| |||||||||| |||| ||| |||||||||||||||||||||||| ||| ||||| |||| ||| || | ||||| |||| |
|
|
| T |
38945495 |
tacagctaacaagtacgtcagatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatattagaaccgagttt |
38945594 |
T |
|
| Q |
242 |
ggtggagtcttgcgtactga-tgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgctatc |
340 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||| || | | |||||| || ||||||||| |||| |||||||||| | ||| ||| |||||| |
|
|
| T |
38945595 |
ggtggagtcttgcgtaatgactaagggtatattcattgcgagtttctctgatttcattccaggatcatttgacatcttgttggccgagctttctgctatt |
38945694 |
T |
|
| Q |
341 |
tatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgcta |
393 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||| | | ||||||||||| |
|
|
| T |
38945695 |
tatcacggtctgatcatggcgaaggatttgggttatacatagcttgtttgcta |
38945747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 337
Target Start/End: Complemental strand, 10484367 - 10484180
Alignment:
| Q |
150 |
acaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggtttggtggagt |
249 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||| || |||||||||||||| ||| || | ||||||| |||| | | ||||| ||||||||| || |
|
|
| T |
10484367 |
acaggtacaagagatggaacaataataattttacagatgttattcttaatgtggatggtagctatcatggtactcctgttagaaccgagtttggtggggt |
10484268 |
T |
|
| Q |
250 |
cttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgct |
337 |
Q |
| |
|
|||||||| ||| ||||| |||||||| | ||||||| ||| |||||||| ||| |||||||| ||| ||||||| ||| |||| |
|
|
| T |
10484267 |
cttgcgtaatgacacaggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgagctttatgct |
10484180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 401
Target Start/End: Complemental strand, 10470492 - 10470230
Alignment:
| Q |
139 |
tgttacaactaacaggtacatcagatggaacgataacaatttttcaggtgctattcttaatgtgggtggaagttgtcatggttctccaatcaaaaccggg |
238 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||| |||||| || ||| |||||||||||||| || || | ||||||| |||| | | || |||| |
|
|
| T |
10470492 |
tgttacgactgacaggtacatcagatggaacaataataattttacaagtgttattcttaatgtggatgatagctctcatggtactcctgttagaaacggg |
10470393 |
T |
|
| Q |
239 |
tttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgccaggtgagatttttgcta |
338 |
Q |
| |
|
|||||| | |||||| ||| ||| |||| | |||| ||| | ||||||| ||| |||||||| ||| || ||| | | ||||||| ||| ||||| |
|
|
| T |
10470392 |
tttggtcgggtcttgtgtaatgacgcagatttatttcttgcgggcttctccggttttattccaggttcagattacaccctattaggtgagctttctgcta |
10470293 |
T |
|
| Q |
339 |
tctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgctattctgatt |
401 |
Q |
| |
|
|| ||||| | |||||||||| || |||||| | ||||| | |||| |||||||||||||| |
|
|
| T |
10470292 |
cctgtcacgggctgatcatggctaaagatttgagttatgcaaaacttgcttgctattctgatt |
10470230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 9536263 - 9536347
Alignment:
| Q |
4 |
gagtttggtgttcttggcgatatcggaaccttatgtgtttgggtggtgaattttggtctttacatcttctgacttgtaacataaa |
88 |
Q |
| |
|
|||||||||| ||||||||| ||| || ||||||||| ||||||||||| ||||||||| |||| ||| ||||||||||||| |
|
|
| T |
9536263 |
gagtttggtggtcttggcgacatcaaaatcttatgtgtatgggtggtgaaacttggtctttgcatcgcctgtcttgtaacataaa |
9536347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 401
Target Start/End: Complemental strand, 35061265 - 35061057
Alignment:
| Q |
193 |
tcttaatgtgggtggaagttgtcatggttctccaatcaaaaccgggtttggtggagtcttgcgtactgatgcaggtatattccttttgtgcttctctagt |
292 |
Q |
| |
|
|||||| |||| ||| || ||||||||| |||| | | ||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||| | |
|
|
| T |
35061265 |
tcttaacgtggatggtagctgtcatggtactcctgttagaaccgggtttggtggggtcttgcgtaatgacacaggtttattccttgcaggcttctccgat |
35061166 |
T |
|
| Q |
293 |
tgcattccaggctcatatgacatcttgccaggtgagatttttgctatctatcacgagttgatcatggcaaaggatttgggatatgccgaccttgtttgct |
392 |
Q |
| |
|
| |||||||| || |||| ||| ||| ||||||| ||| |||||| ||||| | | | ||||||||||| |||||||| ||||| | |||| ||||| |
|
|
| T |
35061165 |
tttattccaggttcggatgatatcctgctaggtgagctttctgctatatatcatgggctaatcatggcaaaagatttgggttatgcataacttgcttgct |
35061066 |
T |
|
| Q |
393 |
attctgatt |
401 |
Q |
| |
|
||||||||| |
|
|
| T |
35061065 |
attctgatt |
35061057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 43111960 - 43111904
Alignment:
| Q |
264 |
caggtatattccttttgtgcttctctagttgcattccaggctcatatgacatcttgc |
320 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43111960 |
caggtttattccttgtggacttctctagttttattccaggctcatatgacatcttgc |
43111904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University