View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_1D_low_9 (Length: 384)
Name: NF4607_1D_low_9
Description: NF4607_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_1D_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 37081280 - 37081644
Alignment:
| Q |
1 |
tatgatgtgtggtgatttatatattatattttaaagtttgaaaaaagctggcatttgtttaattagtgaaaatattattgcattaaatattccaatcttg |
100 |
Q |
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| T |
37081280 |
tatgatgtatggtgatttatatattatattttaaagtttgaaaaaagctggcatttgtttaattagtgaaaatat-attgcattaaatattccaatcttg |
37081378 |
T |
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| Q |
101 |
caatttgaggaaatgttttggtttccacttcccttgtttgagttaatgtgcaggcacttcagggtattttattatgctaaaaaatctcactcactgaact |
200 |
Q |
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| T |
37081379 |
caatttgaggaaatgttttggtttccacttcccttgtttgagttaatgtgcaggcacttcagggtattttattatgctaaaaaatctcactcactgaact |
37081478 |
T |
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| Q |
201 |
gttcacatgcaggcataccttagtgcaattattgtctacctttatgctcaagactttaagcaagcagagaagtgttacaatgattgctcgcagtaagttt |
300 |
Q |
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| T |
37081479 |
gttcacatgcaggcataccttagtgcaattattgtctacctttatggtcaagactttaagcaagcagagaagtgttacaatgattgctcgcagtaagttt |
37081578 |
T |
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| Q |
301 |
gtcgaatgcctcatttttcttgtgccattatgtggcttcatactcaacctcatacagcattttctg |
366 |
Q |
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| T |
37081579 |
atcgaatgcctcatttttcttgtgccattatgtggcttcatactcaacctcatacagcattttctg |
37081644 |
T |
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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 20668026 - 20668119
Alignment:
| Q |
207 |
atgcaggcataccttagtgcaattattgtctacctttatgctcaagactttaagcaagcagagaagtgttacaatgattgctcgcagtaagttt |
300 |
Q |
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| T |
20668026 |
atgcaggcttatcttagtgcaattattgtctacctttatgctcacgattttaagcaagcagaaaaatgctataatgactgctctcagtaagttt |
20668119 |
T |
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