View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_2D_low_2 (Length: 275)
Name: NF4607_2D_low_2
Description: NF4607_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_2D_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 42199577 - 42199819
Alignment:
| Q |
22 |
atggaagggagacctaagtaagtagcactccctatgcttctcgtcactccaaggcaagtggtaagttgtgtaaataatctatgtgaaacatgtgcttgcg |
121 |
Q |
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| T |
42199577 |
atggaagggagacctaagtaagtagcactccctatgcttctcgtcactccaaggcaagtggtaagttgtgtaaataatctatgtgaaacatgtgcttgcg |
42199676 |
T |
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| Q |
122 |
aaaaggaagatgcaatacctctttctttcactttcatcattctatccttatt-------gcacaccattcatattattttctttcatgcagctgcatcca |
214 |
Q |
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| T |
42199677 |
aaaaggaaaatgcaatacctctttctttcactttcatcattctatccttattgcaataagcacactattcatattattttctttcatgcagctgcatccg |
42199776 |
T |
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| Q |
215 |
gtccaaaataaaaatcacatgcagtttaatttggatcggtttt |
257 |
Q |
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| T |
42199777 |
gtccaaaataaaaatcacatgcggtttaatttggatcggtttt |
42199819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 35611939 - 35611884
Alignment:
| Q |
22 |
atggaagggagacctaagtaagtagcactccctatgcttctcgtcactccaaggca |
77 |
Q |
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| T |
35611939 |
atggaagggagtcctaagtaagcaccactgcctatgcttctcgtcaccccaaggca |
35611884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 29291240 - 29291185
Alignment:
| Q |
22 |
atggaagggagacctaagtaagtagcactccctatgcttctcgtcactccaaggca |
77 |
Q |
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| T |
29291240 |
atggaagggagtcctaagtaagtaccactgcctatgcttctcgtcaccccaaggca |
29291185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 4018867 - 4018922
Alignment:
| Q |
22 |
atggaagggagacctaagtaagtagcactccctatgcttctcgtcactccaaggca |
77 |
Q |
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||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
4018867 |
atggaagggagtcctaagtaagtaccactgcctatgcttctcgtcaccccaaggca |
4018922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 24465628 - 24465573
Alignment:
| Q |
22 |
atggaagggagacctaagtaagtagcactccctatgcttctcgtcactccaaggca |
77 |
Q |
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||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
24465628 |
atggaagggagtcctaagtaagtaccactgcctatgcttctcgtcaccccaaggca |
24465573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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