View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_2D_low_4 (Length: 242)

Name: NF4607_2D_low_4
Description: NF4607_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_2D_low_4
NF4607_2D_low_4
[»] chr8 (9 HSPs)
chr8 (14-160)||(16659665-16659811)
chr8 (14-160)||(1668871-1669017)
chr8 (14-160)||(38520433-38520579)
chr8 (14-160)||(22015679-22015825)
chr8 (200-242)||(1668789-1668831)
chr8 (200-242)||(16659583-16659625)
chr8 (200-242)||(38520619-38520661)
chr8 (200-242)||(22015597-22015639)
chr8 (16-78)||(27185437-27185497)
[»] chr5 (2 HSPs)
chr5 (14-160)||(3175009-3175155)
chr5 (200-242)||(3174927-3174969)
[»] chr4 (6 HSPs)
chr4 (14-160)||(45144784-45144930)
chr4 (14-160)||(23217427-23217573)
chr4 (83-160)||(45153564-45153641)
chr4 (200-242)||(23217613-23217655)
chr4 (200-242)||(45144702-45144744)
chr4 (200-242)||(45153482-45153524)
[»] scaffold0393 (2 HSPs)
scaffold0393 (14-160)||(10762-10908)
scaffold0393 (200-242)||(10948-10990)
[»] chr3 (6 HSPs)
chr3 (14-160)||(2338023-2338169)
chr3 (84-160)||(21239933-21240009)
chr3 (14-77)||(52894098-52894160)
chr3 (200-242)||(2338209-2338251)
chr3 (200-242)||(21239851-21239893)
chr3 (14-58)||(21240003-21240047)
[»] chr2 (4 HSPs)
chr2 (14-160)||(3934501-3934646)
chr2 (14-138)||(38974879-38975003)
chr2 (200-242)||(38975059-38975101)
chr2 (200-242)||(3934686-3934728)
[»] chr1 (2 HSPs)
chr1 (12-86)||(47192651-47192723)
chr1 (115-153)||(47192536-47192574)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 16659811 - 16659665
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16659811 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcatcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 16659712  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16659711 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 16659665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 1669017 - 1668871
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1669017 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaagcatcattgaaaagcaaccaccaaaga 1668918  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1668917 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 1668871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 38520433 - 38520579
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38520433 catcaaacaatgaggccgaagtatatactagcatagagcaagcataccccttcctcactcctgaactagccaagcatcattgaaaagcaaccaccaaaga 38520532  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38520533 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 38520579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 22015825 - 22015679
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22015825 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcctgaactagccaagcatcattgaaaagcatccaccaaaga 22015726  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  22015725 cagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 22015679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 1668831 - 1668789
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1668831 tggcagtaaggcacagacagctccgaatactaaaccatgatct 1668789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 16659625 - 16659583
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16659625 tggcagtaaggcacagacagctccgaatactaaaccatgatct 16659583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 38520619 - 38520661
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38520619 tggcagtaaggcacagacagctccgaatactaaaccatgatct 38520661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 22015639 - 22015597
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  22015639 tggcagtaaggcacagacagctccgaatactaaactatgatct 22015597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 27185437 - 27185497
Alignment:
Q  16 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaa 78  Q
    ||||||| |||||| ||||||||  || |||| | ||||||||||||||||||||||||||||    
T  27185437 tcaaacagtgaggctgaagtata--cttgcatggggcaagcatacccctgcctcactcccgaa 27185497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 3175155 - 3175009
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175155 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 3175056  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  3175055 cagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 3175009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 3174969 - 3174927
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3174969 tggcagtaaggcacagacagctccgaatactaaaccatgatct 3174927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 45144930 - 45144784
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144930 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 45144831  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  45144830 cagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 45144784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 23217427 - 23217573
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23217427 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaagcatcattgaaaagcaaccaccaaaga 23217526  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23217527 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 23217573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 45153641 - 45153564
Alignment:
Q  83 ccaagcatcattgaaaagcaaccaccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153641 ccaagcatcattgaaaagcaaccaccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 45153564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 23217613 - 23217655
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23217613 tggcagtaaggcacagacagctccgaatactaaaccatgatct 23217655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 45144744 - 45144702
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45144744 tggcagtaaggcacagacagctccgaatactaaaccatgatct 45144702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 45153524 - 45153482
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45153524 tggcagtaaggcacagacagctccgaatactaaaccatgatct 45153482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 10762 - 10908
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10762 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaaccaaccaccaaaga 10861  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  10862 cagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 10908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 10948 - 10990
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  10948 tggcagtaaggcacagacagctctaaatactaaaccatgatct 10990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 2338023 - 2338169
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2338023 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaagcatcattgaaaagcaaccaccaaaga 2338122  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2338123 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 2338169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 21240009 - 21239933
Alignment:
Q  84 caagcatcattgaaaagcaaccaccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21240009 caagcatcattgaaaagcaaccaccaaagacagaaaaacagctgcaagcagcgctgatctgctacaccagcagcacc 21239933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 52894160 - 52894098
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccga 77  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52894160 catcaaaca-tgaggccgaagtatatactagcacagagcaagcatacccctgcctcactcccga 52894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 2338209 - 2338251
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2338209 tggcagtaaggcacagacagctccgaatactaaaccatgatct 2338251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 21239893 - 21239851
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21239893 tggcagtaaggcacagacagctccgaatactaaaccatgatct 21239851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 21240047 - 21240003
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcat 58  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  21240047 catcaaacaatgacgccgaagtatatactagcatagagcaagcat 21240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 3934501 - 3934646
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3934501 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagacaagcatcattgaaaagcaaccaccaaaga 3934600  T
Q  114 cagaaaaacagctgcaagcagcgctgatctgctacaccagtagcacc 160  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  3934601 cag-aaaacagctgcaagcagcgctgatctgctacaccagcagcacc 3934646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 38974879 - 38975003
Alignment:
Q  14 catcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38974879 catcaaacaatgaggccgaagtatatactagcatagagtaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaaga 38974978  T
Q  114 cagaaaaacagctgcaagcagcgct 138  Q
    |||||||||||||||||||||||||    
T  38974979 cagaaaaacagctgcaagcagcgct 38975003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 38975059 - 38975101
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38975059 tggcagtaaggcacagacagctccgaatactaaaccatgatct 38975101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 3934686 - 3934728
Alignment:
Q  200 tggcagtaaggcacagacagctccgaatactaaaccatgatct 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  3934686 tggcagtaaggcacagacagctctgaatactaaaccatgatct 3934728  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 47192723 - 47192651
Alignment:
Q  12 gacatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaa 86  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||    
T  47192723 gacatcaaacaataaggccgaagtata--ctagcatagagcaagcatacccctgtctcactcctgaactagccaa 47192651  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 47192574 - 47192536
Alignment:
Q  115 agaaaaacagctgcaagcagcgctgatctgctacaccag 153  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  47192574 agaaaaacagctgcaagcagcgctgatctactacaccag 47192536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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