View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_high_1 (Length: 580)
Name: NF4607_high_1
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 48570316 - 48569761
Alignment:
| Q |
1 |
aattttgtttttatatctgtgttcttgataaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaat |
100 |
Q |
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| T |
48570316 |
aattttgtttttatat--gtgttcttgataaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcatcttgaaaactgaaagatgaaaaat |
48570219 |
T |
|
| Q |
101 |
tggaattgaatttagcaccgaattaagaagtacaattgtcccttcgaggctaatatgcttatttttccccatgaccacgagttcaatttctccgacatt- |
199 |
Q |
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| T |
48570218 |
tggaattgaatttagcaccgaattaagaagtacagttgtcccttcgaggctaatatgcttattt--ccccatgaccacgagttcaatttctccgacatta |
48570121 |
T |
|
| Q |
200 |
---tgttccaacgtcttccacgtggcctctctacccggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaa |
296 |
Q |
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| T |
48570120 |
atttgttccaacgtcttccatgtggcctctctacccggatttgcccccaccagcaatcccaaatatttaaatggaagtctcccttcactaaaattcaaaa |
48570021 |
T |
|
| Q |
297 |
aggttacaatgcttatttcaagtaaaatatttcgccaactaagattgagctagcgatagggttagactctcgcaacatgacaaactcaagtttgaatact |
396 |
Q |
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| T |
48570020 |
aggttacgatgcttatttcaagtaaaatatttcgccaactaagattgagctagcgatagggttagactctcgcaacatgacaaactcaagtttgaatact |
48569921 |
T |
|
| Q |
397 |
agttatagttaagagaggtatctacatgttgcgatccgacacaacttgaataggattacctcatatggaggatcctctagaaaaccaaaactatatattt |
496 |
Q |
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| T |
48569920 |
agttatagttaagagaggtatctacatgttgcgatccgacacaacttgaataggattacctcatatggaggatcctctagaaaaccaaaactatatattt |
48569821 |
T |
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| Q |
497 |
tacatcagtataatagccgcactgcacatggcaacttattacaagataactatgggagag |
556 |
Q |
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| T |
48569820 |
tacaacagtataatagccgcactgcacatggcaacttattacgagataactatgggagag |
48569761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 13853148 - 13853082
Alignment:
| Q |
232 |
cggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaag |
298 |
Q |
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| T |
13853148 |
cggattagcccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaag |
13853082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 4864511 - 4864593
Alignment:
| Q |
55 |
tcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaattaagaagtacaatt |
137 |
Q |
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| T |
4864511 |
tcttcaaaactttcaccggcattttgaaaaaggaaagatgaaagataggaatagaattcaaaatagaattaagaaggacaatt |
4864593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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