View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_high_3 (Length: 444)

Name: NF4607_high_3
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_high_3
NF4607_high_3
[»] chr2 (1 HSPs)
chr2 (1-444)||(43578031-43578465)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 43578465 - 43578031
Alignment:
Q  1 ttgagcagcttttcttctggctttggttgaaagcttgatggggtgagtggttgattcagtgttgttttgggaagtgggtgtttgagataaagtgttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43578465 ttgagcagcttttcttctggctttggttgaaagcttgatggggtgagtggttgattcagtgttgttttgggaagtgggtgtttgagataaagtgttgttg 43578366  T
Q  101 atggtggtggtagtgaagggaagagtggcacggttgaaagtgtgtttgagagagaaagaagatagaaatgggcgatgggtgagaatagaaaaaagagggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43578365 atggtggtggtagtgaagggaagagtggcacggttgaaagtgtgtttgagagagaaagaagatagaaatgggcgatgggtgagaatagaaaaaagagggg 43578266  T
Q  201 tgcgtttggccattgaaacggttccacgcagcatttcgttaaagaaagaaaacaaagagagaggaaaacgacctcggacctgtgatgttgtttgtgttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43578265 tgcgtttggccattgaaacggttccacgcagcatttcgttaaagaaagaaaacaaagagagaggaaaacgacctcggacctgtgatgttgtttgtgttca 43578166  T
Q  301 aaaccctatccatatatgtcccgcgtacttcgtctcttgatgatgttctgttctgcggaccgtgattcactgcagtcataaatttgataaggtcaagcag 400  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  43578165 aaaccctatccatatatgtcccgcgtacttcgtc---------tgttctgttctgcggaccgtgattcactgcagtccttaatttgataaggtcacgcag 43578075  T
Q  401 tcaaacaaaagataaccatccgatctaatcaacgctgtagattc 444  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  43578074 tcaaacaaaagatagccatccgatctaatcaacgctgtagattc 43578031  T

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