View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_low_1 (Length: 637)
Name: NF4607_low_1
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 21 - 565
Target Start/End: Original strand, 54952623 - 54953166
Alignment:
| Q |
21 |
attgaccaaatagtgattttattcattatgctaactataattatgatcttaattaatattcttaaacaaattttcagtctttctctggagcaatccatcc |
120 |
Q |
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| T |
54952623 |
attgaccaaagagtgattttattcattatgctaacgataattatgatcttaattaatattcttaaacaaattttcagtctttctctggagcaatccatcc |
54952722 |
T |
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| Q |
121 |
tcctccacagtcaaatttcctgtacgagcaaatggctttgagaagacaaagcaaagggacaggtgtgtttatcccacagtcaacaacacaaccaagaagg |
220 |
Q |
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| T |
54952723 |
tcctccacagtcaaatttcctgtacgagcaaatggctttgagaagacaaagcaaagggacaggtgtgtttatcccacagtcaacaacacaaccaagaagg |
54952822 |
T |
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| Q |
221 |
aagcacagaaaaggaagatcttcttcatatgcaaaatgtcaaaaacaatctcaagatacaacaagaacggtttctcaaaattcttttaaacctataaata |
320 |
Q |
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| T |
54952823 |
aagcacagaaaaggaagatcttcttcatatgcaaaatgtcaaaaacaatctcaagatacaacaagaacggtttctcaaaattcttttaaacctataaata |
54952922 |
T |
|
| Q |
321 |
atggttgaggatacatacatgtgttgatccttcttcaaaacagcataattttctactcatcattagttactttgccaagtatgaataattctatagatgg |
420 |
Q |
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| T |
54952923 |
atggttgaggatacatacatgtgttgatccttcttcaaaacagcatgattttcta--catcattagttactttgccaagtatgaataattctatagatgg |
54953020 |
T |
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| Q |
421 |
ttaatttcaaggatttatatatacataggccattatgtacatgggaatgccagtatta-tttattagtcttattatagcaagggtcactgcaaggtttat |
519 |
Q |
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| T |
54953021 |
ttaatttcaaggatttatatatacataggccattatgtacatgggaatgccagtattattttattagtcttattatagcaaaggtccctgcaaggtttat |
54953120 |
T |
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| Q |
520 |
tctgtaacccttcaccatgtgtgaaagtttttatctagtttgataa |
565 |
Q |
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| T |
54953121 |
tctgtaacacttcaccgtgtggggaagtttttatctagtttgataa |
54953166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 599 - 630
Target Start/End: Original strand, 54953204 - 54953235
Alignment:
| Q |
599 |
atctaattgtattgtaatatatatgatgatgt |
630 |
Q |
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| T |
54953204 |
atctaattgtattgtaatatatatgatgatgt |
54953235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 7835792 - 7835909
Alignment:
| Q |
161 |
agaagacaaagcaaagggacaggtgtgtttatcccacagtcaacaacacaaccaagaaggaagcacagaaaaggaagatcttcttcatatgcaaaatgtc |
260 |
Q |
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|||||| |||||||||| ||||| |||||||||||||| | |||||||||||||||||| | ||| |||||||||||| ||||| |||||| || |
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| T |
7835792 |
agaagagaaagcaaaggaacaggagtgtttatcccaca---agcaacacaaccaagaaggaggtacaagaaaggaagatctaattcattctcaaaatatc |
7835888 |
T |
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| Q |
261 |
aaaaacaatctcaagatacaa |
281 |
Q |
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|||| || |||||||| |||| |
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| T |
7835889 |
aaaagcagtctcaagacacaa |
7835909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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