View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4607_low_11 (Length: 219)
Name: NF4607_low_11
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 29730160 - 29729974
Alignment:
| Q |
16 |
gagatgaagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttga |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29730160 |
gagatgaagcacttgcttttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttga |
29730061 |
T |
|
| Q |
116 |
cggctgccatcttcttgaatctattgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattggcaattgcaaaaac |
202 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29730060 |
cggctgccatcatcttgaatcttttgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattagcaattgcaaaaac |
29729974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 29729998 - 29729861
Alignment:
| Q |
19 |
atgaagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgt----taactatgttggatttcttgctattcttg |
114 |
Q |
| |
|
|||||||| | || ||||| |||||||| |||| ||||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||| |
|
|
| T |
29729998 |
atgaagcattagcaattgcaaaaacaatatctggtttacgccatcttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttg |
29729899 |
T |
|
| Q |
115 |
acggctgccatcttcttgaatctattgatctgcaaagt |
152 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
29729898 |
accgctgccctcttcttgaatctcttgatctgcaaagt |
29729861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 29713318 - 29713433
Alignment:
| Q |
22 |
aagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctg |
121 |
Q |
| |
|
||||| ||| |||||| ||||||||| |||||||| ||||||||||| |||||||| ||| | ||||| || |||||| ||||||||||||| ||||| |
|
|
| T |
29713318 |
aagcatttgttattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgatggctg |
29713417 |
T |
|
| Q |
122 |
ccatcttcttgaatct |
137 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
29713418 |
ccctcttcttgaatct |
29713433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 29752615 - 29752744
Alignment:
| Q |
18 |
gatgaagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacg |
117 |
Q |
| |
|
||||||||| || |||||| |||||||||| ||||||||||||||| ||| || |||| | | ||||||||| || ||| |||||||||||||||| |
|
|
| T |
29752615 |
gatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgcttgctattcttgacg |
29752714 |
T |
|
| Q |
118 |
gctgccatcttcttgaatctattgatctgc |
147 |
Q |
| |
|
| |||| ||||| |||||| ||||||||| |
|
|
| T |
29752715 |
gttgcccgcttctcgaatctcttgatctgc |
29752744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 41100288 - 41100173
Alignment:
| Q |
22 |
aagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctg |
121 |
Q |
| |
|
||||| ||| |||||| |||| |||| ||||||||||||||||| || |||||||| ||| ||| |||| | |||| |||||| ||||||| ||||| |
|
|
| T |
41100288 |
aagcatttgttattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggtagattgcttgctcttcttgatggctg |
41100189 |
T |
|
| Q |
122 |
ccatcttcttgaatct |
137 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
41100188 |
ccctcttcttgaatct |
41100173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University