View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_low_6 (Length: 367)

Name: NF4607_low_6
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_low_6
NF4607_low_6
[»] chr3 (16 HSPs)
chr3 (19-253)||(23449608-23449842)
chr3 (54-272)||(23501467-23501685)
chr3 (275-362)||(23501242-23501329)
chr3 (166-272)||(23360825-23360927)
chr3 (166-272)||(23367665-23367767)
chr3 (163-272)||(23389385-23389490)
chr3 (275-362)||(23449479-23449566)
chr3 (163-272)||(23458922-23459030)
chr3 (182-272)||(23436350-23436436)
chr3 (280-362)||(23456243-23456325)
chr3 (5-54)||(23501713-23501762)
chr3 (280-348)||(23388612-23388680)
chr3 (314-357)||(23406963-23407006)
chr3 (290-362)||(23354108-23354180)
chr3 (314-357)||(23465617-23465660)
chr3 (153-233)||(23481813-23481888)
[»] scaffold0570 (2 HSPs)
scaffold0570 (280-362)||(9472-9554)
scaffold0570 (153-233)||(8681-8756)
[»] scaffold0201 (1 HSPs)
scaffold0201 (171-201)||(16178-16208)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 23449842 - 23449608
Alignment:
Q  19 aagcaaacgaaacttccttgaaggataaccatactttacatctatatacaatatacatcatgaccaaccaaagcattatgaagagtttgtatgtgctcat 118  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23449842 aagcaaacgaaacttccttgaaggataaccacacattacatctatatacaatatacatcatgaccaaccaaagcattatgaagagtttgtgtgtgctcat 23449743  T
Q  119 ccaaaattaattccggaagctggattataacttttacagtattcttctcctctattgcatgaagctggattctgactttggtacgtataatcttttctcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23449742 ccaaaattaattccggaagctggattataacttttacagtattcttctcctctattgcatgaagctggattctgactttggtacgtataatcttttttcc 23449643  T
Q  219 ctcaattttaatttatctactactttctctaatta 253  Q
    |||||||||||||||||||||||||||||||||||    
T  23449642 ctcaattttaatttatctactactttctctaatta 23449608  T

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Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 54 - 272
Target Start/End: Complemental strand, 23501685 - 23501467
Alignment:
Q  54 ttacatctatatacaatatacatcatgaccaaccaaa---gcattatgaagagtttgtatgtgctcatccaaaattaattccggaagctggattataact 150  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  23501685 ttacatctatatacaatatacatcatgaccaaccaaataagcattatgaagagtttgtgtgtgctcatc-aaaattaattccggaagctggattataact 23501587  T
Q  151 tttacagtattcttctcctctattgcatgaagctggattctgactttggtacgtataatcttttctccctcaattttaatttatctactactttctctaa 250  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  23501586 tt-acagtattcttctcctctattgc-tgaagctggattctgactttggtatgtataatcttttttccctcagttttaatttaactactactttctctaa 23501489  T
Q  251 ttacataggtcattgtcaaatt 272  Q
    ||||||||||||||||||||||    
T  23501488 ttacataggtcattgtcaaatt 23501467  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 23501329 - 23501242
Alignment:
Q  275 taatcagtgcaggcacttggaattcataactgccgcgccgaaaatgagcggtgctttttcctctatatcttcttttgatgtggagcct 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||| ||||    
T  23501329 taatcagtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgcct 23501242  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 23360927 - 23360825
Alignment:
Q  166 tcctctattgcatgaagctggattctgactttggtacgtataatcttttctccctcaattttaatttatctactactttctctaattacataggtcattg 265  Q
    |||||||||||||||||||||||||||||||||||| |    || |||| ||| || ||||||||||| |||||| ||||||||||||||||||||||||    
T  23360927 tcctctattgcatgaagctggattctgactttggtatg----attttttttccttcgattttaatttaactactagtttctctaattacataggtcattg 23360832  T
Q  266 tcaaatt 272  Q
    |||||||    
T  23360831 tcaaatt 23360825  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 23367767 - 23367665
Alignment:
Q  166 tcctctattgcatgaagctggattctgactttggtacgtataatcttttctccctcaattttaatttatctactactttctctaattacataggtcattg 265  Q
    |||||||||||||||||||||||||||||||||||| |    || |||| ||| || ||||||||||| |||||| ||||||||||||||||||||||||    
T  23367767 tcctctattgcatgaagctggattctgactttggtatg----attttttttccttcgattttaatttaactactagtttctctaattacataggtcattg 23367672  T
Q  266 tcaaatt 272  Q
    |||||||    
T  23367671 tcaaatt 23367665  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 23389490 - 23389385
Alignment:
Q  163 ttctcctctattgcatgaagctggattctgactttggtacgtataatcttttctccctcaattttaatttatctactactttctctaattacataggtca 262  Q
    ||||||||||||||||||||||||||||||||||||    |||| ||| ||| ||||||| |||||||||| |||||| |||||||||| ||||||| ||    
T  23389490 ttctcctctattgcatgaagctggattctgactttg----gtatgatcctttttccctcatttttaatttaactactagtttctctaatcacataggcca 23389395  T
Q  263 ttgtcaaatt 272  Q
    ||||||||||    
T  23389394 ttgtcaaatt 23389385  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 23449566 - 23449479
Alignment:
Q  275 taatcagtgcaggcacttggaattcataactgccgcgccgaaaatgagcggtgctttttcctctatatcttcttttgatgtggagcct 362  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||  ||||| |||||||| ||||    
T  23449566 taatcagtgcaggcacttggaattcataactgccgtgccgaaaatgagcagtgccttttcctctatagtttcttctgatgtggtgcct 23449479  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 23459030 - 23458922
Alignment:
Q  163 ttctcctctattgcatgaagctggatt---ctgactttggtacgtataatcttttctccctcaattttaatttatctactactttctctaattacatagg 259  Q
    |||||||||||||||||||||||||||   |||||||||||| |    ||||||| |||||||||||||||||| || ||| ||||||||||||||||||    
T  23459030 ttctcctctattgcatgaagctggattgatctgactttggtatg----atcttttttccctcaattttaatttaactgctagtttctctaattacatagg 23458935  T
Q  260 tcattgtcaaatt 272  Q
    ||||| |||||||    
T  23458934 tcattttcaaatt 23458922  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 23436436 - 23436350
Alignment:
Q  182 gctggattctgactttggtacgtataatcttttctccctcaattttaatttatctactactttctctaattacataggtcattgtcaaatt 272  Q
    |||||||||||||||||||| |    ||||||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  23436436 gctggattctgactttggtatg----atcttttttccctcaattttaatttaactactagtttctctaattacatagatcattgtcaaatt 23436350  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 23456325 - 23456243
Alignment:
Q  280 agtgcaggcacttggaattcataactgccgcgccgaaaatgagcggtgctttttcctctatatcttcttttgatgtggagcct 362  Q
    |||||||||| |||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||| | |||||| ||||    
T  23456325 agtgcaggcatttggaaatcataaccgccgcgcagaaaatgagcagtgctttttcctctatatcttcttcttatgtggggcct 23456243  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 23501762 - 23501713
Alignment:
Q  5 gctagattatactaaagcaaacgaaacttccttgaaggataaccatactt 54  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  23501762 gctacattttactaaagcaaacgaaacttccttgaaggataaccacactt 23501713  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 23388680 - 23388612
Alignment:
Q  280 agtgcaggcacttggaattcataactgccgcgccgaaaatgagcggtgctttttcctctatatcttctt 348  Q
    ||||||||||||||||||||||||   ||| || |||||||||| |||||||||||||| |||| ||||    
T  23388680 agtgcaggcacttggaattcataatctccgagcagaaaatgagcagtgctttttcctctgtatcctctt 23388612  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 23407006 - 23406963
Alignment:
Q  314 gaaaatgagcggtgctttttcctctatatcttcttttgatgtgg 357  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  23407006 gaaaatgagcagtgctttttcctctatatcttcttctgatgtgg 23406963  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 23354180 - 23354108
Alignment:
Q  290 cttggaattcataa-ctgccgcgccgaaaatgagcggtgctttttcctctatatcttcttttgatgtggagcct 362  Q
    |||||||||||||| |||| |||| ||||||||   |||||||||||||||||||||||| |||||||| ||||    
T  23354180 cttggaattcataatctgc-gcgcagaaaatgactagtgctttttcctctatatcttcttctgatgtggggcct 23354108  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 23465660 - 23465617
Alignment:
Q  314 gaaaatgagcggtgctttttcctctatatcttcttttgatgtgg 357  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||    
T  23465660 gaaaatgagcagtgctttttcctctgtatcttcttctgatgtgg 23465617  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 23481888 - 23481813
Alignment:
Q  153 tacagtattcttctcctctattgcatgaagctggattctgactttggtacgtataatcttttctccctcaattttaattta 233  Q
    |||||| || |||||||||||||||| |||||||| ||||||||||    |||| ||||||| ||| ||||||||||||||    
T  23481888 tacagtctttttctcctctattgcattaagctgga-tctgactttg----gtatcatcttttttccatcaattttaattta 23481813  T

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Target: scaffold0570 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 9472 - 9554
Alignment:
Q  280 agtgcaggcacttggaattcataactgccgcgccgaaaatgagcggtgctttttcctctatatcttcttttgatgtggagcct 362  Q
    |||| |||||||||||||||||||| || | ||||||||||||| ||||| |||||||||||  ||||| |||||||| ||||    
T  9472 agtggaggcacttggaattcataacagctgtgccgaaaatgagcagtgctatttcctctatagtttcttctgatgtggtgcct 9554  T

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Target: scaffold0570; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 8681 - 8756
Alignment:
Q  153 tacagtattcttctcctctattgcatgaagctggattctgactttggtacgtataatcttttctccctcaattttaattta 233  Q
    |||||| || |||||||||||||||| |||||||| ||||||||||    |||| ||||||| ||| ||||||||||||||    
T  8681 tacagtctttttctcctctattgcattaagctgga-tctgactttg----gtatgatcttttttccatcaattttaattta 8756  T

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Target: scaffold0201 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 16208 - 16178
Alignment:
Q  171 tattgcatgaagctggattctgactttggta 201  Q
    |||||||||||||||||||||||||||||||    
T  16208 tattgcatgaagctggattctgactttggta 16178  T

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