View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_low_7 (Length: 366)

Name: NF4607_low_7
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_low_7
NF4607_low_7
[»] chr8 (17 HSPs)
chr8 (5-210)||(32002953-32003159)
chr8 (25-210)||(25856426-25856612)
chr8 (77-292)||(21479222-21479435)
chr8 (77-200)||(20736961-20737084)
chr8 (77-200)||(20741830-20741953)
chr8 (77-200)||(20745519-20745642)
chr8 (77-210)||(17679168-17679299)
chr8 (77-210)||(6666794-6666929)
chr8 (231-290)||(20737112-20737171)
chr8 (231-290)||(20741981-20742040)
chr8 (231-290)||(20745670-20745729)
chr8 (83-137)||(22160306-22160361)
chr8 (8-67)||(22160389-22160448)
chr8 (232-290)||(32003190-32003248)
chr8 (77-210)||(39841819-39841950)
chr8 (236-290)||(22092496-22092550)
chr8 (88-200)||(24703013-24703123)
[»] scaffold0600 (1 HSPs)
scaffold0600 (5-209)||(9180-9386)
[»] chr1 (19 HSPs)
chr1 (5-210)||(14816956-14817162)
chr1 (77-210)||(19372034-19372166)
chr1 (83-210)||(6200879-6201005)
chr1 (6-279)||(1958623-1958897)
chr1 (8-187)||(35072340-35072522)
chr1 (77-193)||(22430731-22430847)
chr1 (77-210)||(13467530-13467660)
chr1 (77-210)||(13472524-13472654)
chr1 (97-210)||(31543792-31543903)
chr1 (77-210)||(2388424-2388554)
chr1 (77-210)||(31555872-31556002)
chr1 (231-290)||(19372186-19372245)
chr1 (231-290)||(22430883-22430942)
chr1 (77-210)||(2339240-2339374)
chr1 (237-286)||(14816887-14816936)
chr1 (236-290)||(35072563-35072617)
chr1 (237-290)||(6200810-6200863)
chr1 (236-290)||(2339166-2339220)
chr1 (179-209)||(22488094-22488124)
[»] scaffold0357 (2 HSPs)
scaffold0357 (6-210)||(9534-9743)
scaffold0357 (231-290)||(9767-9826)
[»] scaffold0202 (2 HSPs)
scaffold0202 (5-210)||(24444-24650)
scaffold0202 (229-290)||(24366-24427)
[»] scaffold0114 (2 HSPs)
scaffold0114 (6-209)||(30782-30987)
scaffold0114 (231-290)||(30704-30764)
[»] scaffold0155 (2 HSPs)
scaffold0155 (6-210)||(19768-19974)
scaffold0155 (236-292)||(19688-19744)
[»] scaffold0001 (2 HSPs)
scaffold0001 (5-206)||(99649-99853)
scaffold0001 (231-290)||(99874-99934)
[»] chr7 (31 HSPs)
chr7 (5-210)||(15770056-15770263)
chr7 (77-193)||(23882719-23882836)
chr7 (77-210)||(3427802-3427935)
chr7 (77-292)||(42634302-42634515)
chr7 (8-191)||(34136235-34136424)
chr7 (78-292)||(8814465-8814677)
chr7 (8-210)||(13267861-13268065)
chr7 (77-210)||(27972920-27973051)
chr7 (77-210)||(5205785-5205916)
chr7 (77-210)||(38413435-38413566)
chr7 (234-290)||(3427704-3427760)
chr7 (234-290)||(16269332-16269388)
chr7 (77-210)||(842584-842718)
chr7 (77-210)||(849760-849894)
chr7 (77-210)||(1207764-1207898)
chr7 (111-210)||(13835265-13835362)
chr7 (231-290)||(15769978-15770037)
chr7 (231-290)||(23882625-23882684)
chr7 (236-286)||(12587831-12587881)
chr7 (232-290)||(34136134-34136192)
chr7 (77-210)||(4944525-4944656)
chr7 (77-210)||(27437797-27437928)
chr7 (96-210)||(16269420-16269534)
chr7 (77-210)||(565808-565937)
chr7 (113-210)||(16486177-16486273)
chr7 (231-290)||(13267784-13267843)
chr7 (237-290)||(842735-842788)
chr7 (237-290)||(849911-849964)
chr7 (237-290)||(1207915-1207968)
chr7 (77-210)||(29025987-29026117)
chr7 (77-207)||(12587676-12587807)
[»] chr6 (36 HSPs)
chr6 (5-210)||(1546028-1546235)
chr6 (8-210)||(19716417-19716620)
chr6 (77-210)||(24146813-24146946)
chr6 (6-210)||(27071373-27071579)
chr6 (14-176)||(22776340-22776507)
chr6 (6-279)||(22326682-22326955)
chr6 (77-193)||(20456160-20456276)
chr6 (77-210)||(16820918-16821051)
chr6 (77-210)||(20053934-20054065)
chr6 (83-210)||(27514192-27514319)
chr6 (77-210)||(619266-619400)
chr6 (8-210)||(18946534-18946744)
chr6 (96-210)||(18437709-18437822)
chr6 (293-349)||(219630-219686)
chr6 (77-210)||(27054973-27055105)
chr6 (77-177)||(20044031-20044131)
chr6 (77-210)||(5990227-5990358)
chr6 (77-210)||(18912395-18912528)
chr6 (229-290)||(20043934-20043995)
chr6 (231-290)||(1546254-1546313)
chr6 (115-210)||(16583001-16583095)
chr6 (115-210)||(16612285-16612379)
chr6 (231-290)||(16820841-16820900)
chr6 (231-290)||(27514337-27514396)
chr6 (232-290)||(27071278-27071336)
chr6 (231-292)||(619187-619248)
chr6 (235-292)||(24146737-24146794)
chr6 (111-210)||(16638038-16638135)
chr6 (231-290)||(18437842-18437901)
chr6 (231-286)||(20053860-20053915)
chr6 (231-290)||(20456063-20456122)
chr6 (96-210)||(28307172-28307282)
chr6 (96-210)||(28355977-28356087)
chr6 (231-290)||(22776215-22776274)
chr6 (236-290)||(18946449-18946503)
chr6 (117-210)||(25502729-25502819)
[»] scaffold0068 (1 HSPs)
scaffold0068 (6-290)||(21878-22162)
[»] chr5 (32 HSPs)
chr5 (6-290)||(21691748-21692032)
chr5 (6-210)||(25529387-25529592)
chr5 (77-210)||(1802145-1802278)
chr5 (77-193)||(12391355-12391472)
chr5 (77-292)||(7257997-7258210)
chr5 (77-292)||(7790843-7791055)
chr5 (77-145)||(37581649-37581717)
chr5 (77-210)||(36451089-36451220)
chr5 (77-210)||(20096765-20096895)
chr5 (83-210)||(27230267-27230391)
chr5 (77-176)||(29897501-29897600)
chr5 (77-210)||(33841564-33841694)
chr5 (83-210)||(24961417-24961542)
chr5 (8-66)||(20096920-20096978)
chr5 (83-210)||(20380808-20380931)
chr5 (231-290)||(22954719-22954778)
chr5 (111-210)||(28847661-28847758)
chr5 (8-67)||(36451007-36451066)
chr5 (236-290)||(37581801-37581855)
chr5 (235-292)||(1802297-1802354)
chr5 (77-210)||(11810060-11810190)
chr5 (77-210)||(12177214-12177344)
chr5 (235-292)||(12391264-12391321)
chr5 (77-210)||(21992469-21992600)
chr5 (77-210)||(26085984-26086114)
chr5 (89-210)||(22954797-22954919)
chr5 (233-290)||(29897667-29897724)
chr5 (236-290)||(20096682-20096736)
chr5 (77-210)||(21864064-21864197)
chr5 (135-200)||(23639998-23640062)
chr5 (135-200)||(23832824-23832888)
chr5 (231-290)||(36451238-36451297)
[»] scaffold0138 (2 HSPs)
scaffold0138 (17-193)||(11342-11520)
scaffold0138 (231-290)||(11554-11613)
[»] chr3 (50 HSPs)
chr3 (6-210)||(15623621-15623827)
chr3 (77-210)||(14421587-14421721)
chr3 (8-210)||(30092967-30093170)
chr3 (8-176)||(70903-71072)
chr3 (77-210)||(15533238-15533371)
chr3 (77-209)||(8620466-8620598)
chr3 (77-210)||(6198427-6198561)
chr3 (77-210)||(21611979-21612112)
chr3 (77-210)||(46396609-46396743)
chr3 (77-193)||(8808550-8808667)
chr3 (5-290)||(12476128-12476418)
chr3 (77-290)||(30017094-30017305)
chr3 (8-187)||(33568619-33568803)
chr3 (77-210)||(3680525-3680658)
chr3 (8-210)||(8608944-8609157)
chr3 (8-210)||(23285242-23285452)
chr3 (77-210)||(11184199-11184332)
chr3 (77-176)||(14884508-14884607)
chr3 (77-210)||(13108906-13109037)
chr3 (231-290)||(8609182-8609241)
chr3 (77-210)||(10718909-10719040)
chr3 (5-66)||(14884630-14884691)
chr3 (77-210)||(15681289-15681419)
chr3 (97-210)||(41002131-41002242)
chr3 (97-210)||(41010913-41011024)
chr3 (234-290)||(3680693-3680749)
chr3 (231-290)||(3407994-3408053)
chr3 (135-210)||(8201775-8201849)
chr3 (231-290)||(8808701-8808760)
chr3 (8-67)||(12557791-12557850)
chr3 (231-290)||(21612130-21612189)
chr3 (231-290)||(33568841-33568900)
chr3 (235-292)||(6198580-6198637)
chr3 (235-292)||(8620618-8620675)
chr3 (235-292)||(15533162-15533219)
chr3 (229-290)||(15623847-15623908)
chr3 (77-210)||(25267301-25267431)
chr3 (235-292)||(46396534-46396591)
chr3 (77-205)||(27884277-27884402)
chr3 (83-150)||(12557876-12557943)
chr3 (19-65)||(11184135-11184181)
chr3 (231-290)||(13108829-13108888)
chr3 (231-286)||(14421741-14421796)
chr3 (90-209)||(17929629-17929744)
chr3 (78-200)||(3241631-3241752)
chr3 (135-210)||(14663501-14663574)
chr3 (236-290)||(71129-71183)
chr3 (236-290)||(11184352-11184406)
chr3 (236-290)||(12558027-12558081)
chr3 (8-66)||(13109052-13109110)
[»] chr2 (17 HSPs)
chr2 (5-210)||(24693180-24693384)
chr2 (5-210)||(24702164-24702368)
chr2 (15-210)||(20278192-20278392)
chr2 (77-210)||(3762672-3762802)
chr2 (111-210)||(20614585-20614682)
chr2 (83-210)||(35142440-35142565)
chr2 (77-210)||(24288941-24289075)
chr2 (77-210)||(16277295-16277426)
chr2 (111-210)||(15949275-15949373)
chr2 (83-210)||(30689547-30689670)
chr2 (111-210)||(42570752-42570849)
chr2 (231-290)||(24693401-24693460)
chr2 (148-210)||(25498514-25498576)
chr2 (231-287)||(20278116-20278172)
chr2 (98-210)||(21856208-21856318)
chr2 (112-210)||(21116876-21116972)
chr2 (231-285)||(24702394-24702448)
[»] scaffold1197 (1 HSPs)
scaffold1197 (78-292)||(49-260)
[»] chr4 (27 HSPs)
chr4 (8-210)||(3385647-3385856)
chr4 (5-210)||(20557123-20557338)
chr4 (8-210)||(9187604-9187815)
chr4 (77-210)||(16365005-16365138)
chr4 (77-210)||(22708177-22708310)
chr4 (92-210)||(16723960-16724077)
chr4 (77-210)||(14874151-14874282)
chr4 (83-210)||(15570886-15571014)
chr4 (83-210)||(15575014-15575142)
chr4 (77-207)||(14921601-14921732)
chr4 (234-290)||(3360688-3360744)
chr4 (111-210)||(8099334-8099431)
chr4 (77-156)||(15898719-15898798)
chr4 (231-290)||(22708329-22708388)
chr4 (231-290)||(3831912-3831971)
chr4 (231-290)||(20557360-20557419)
chr4 (77-210)||(26216831-26216960)
chr4 (229-290)||(9187837-9187900)
chr4 (229-269)||(16365155-16365195)
chr4 (231-290)||(12509202-12509261)
chr4 (237-290)||(16723882-16723935)
chr4 (229-292)||(14874299-14874362)
chr4 (236-290)||(15570813-15570867)
chr4 (236-290)||(15574941-15574995)
chr4 (5-46)||(8660676-8660717)
chr4 (77-210)||(12512279-12512411)
chr4 (231-287)||(12512433-12512489)
[»] scaffold0327 (2 HSPs)
scaffold0327 (77-210)||(14984-15117)
scaffold0327 (235-290)||(15143-15198)
[»] scaffold0435 (2 HSPs)
scaffold0435 (77-210)||(11802-11935)
scaffold0435 (234-290)||(11728-11784)
[»] scaffold0004 (2 HSPs)
scaffold0004 (83-207)||(191412-191536)
scaffold0004 (231-290)||(191328-191387)
[»] scaffold0362 (3 HSPs)
scaffold0362 (77-176)||(787-886)
scaffold0362 (5-59)||(901-955)
scaffold0362 (231-269)||(697-735)
[»] scaffold0132 (2 HSPs)
scaffold0132 (77-210)||(32100-32231)
scaffold0132 (231-290)||(32246-32305)
[»] scaffold0320 (2 HSPs)
scaffold0320 (8-210)||(3457-3665)
scaffold0320 (232-269)||(3396-3433)
[»] scaffold0243 (2 HSPs)
scaffold0243 (14-115)||(17694-17796)
scaffold0243 (229-290)||(17863-17924)
[»] scaffold0183 (2 HSPs)
scaffold0183 (77-210)||(32559-32695)
scaffold0183 (232-289)||(32710-32767)
[»] scaffold0014 (3 HSPs)
scaffold0014 (77-193)||(758-873)
scaffold0014 (231-290)||(908-967)
scaffold0014 (236-290)||(183245-183299)
[»] scaffold0306 (3 HSPs)
scaffold0306 (77-210)||(18452-18583)
scaffold0306 (231-290)||(18600-18659)
scaffold0306 (32-66)||(18403-18437)
[»] scaffold0441 (2 HSPs)
scaffold0441 (77-210)||(7214-7351)
scaffold0441 (231-286)||(7369-7424)
[»] scaffold0029 (2 HSPs)
scaffold0029 (77-210)||(75420-75556)
scaffold0029 (236-281)||(75579-75624)
[»] scaffold0027 (1 HSPs)
scaffold0027 (111-210)||(59691-59788)
[»] scaffold0019 (2 HSPs)
scaffold0019 (111-210)||(16730-16828)
scaffold0019 (231-290)||(16654-16713)
[»] scaffold0016 (1 HSPs)
scaffold0016 (135-210)||(19520-19594)
[»] scaffold0002 (1 HSPs)
scaffold0002 (111-210)||(125594-125691)
[»] scaffold0582 (2 HSPs)
scaffold0582 (236-290)||(4324-4378)
scaffold0582 (77-200)||(4406-4529)
[»] scaffold0551 (2 HSPs)
scaffold0551 (236-292)||(9297-9353)
scaffold0551 (77-125)||(9357-9405)
[»] scaffold0015 (1 HSPs)
scaffold0015 (135-210)||(166012-166086)
[»] scaffold0009 (1 HSPs)
scaffold0009 (86-210)||(153017-153140)
[»] scaffold0389 (1 HSPs)
scaffold0389 (75-210)||(3546-3685)
[»] scaffold0044 (1 HSPs)
scaffold0044 (98-210)||(70730-70839)
[»] scaffold0157 (3 HSPs)
scaffold0157 (231-290)||(11216-11275)
scaffold0157 (77-210)||(8496-8628)
scaffold0157 (231-287)||(8418-8474)
[»] scaffold0605 (1 HSPs)
scaffold0605 (96-210)||(4892-5003)
[»] scaffold0125 (1 HSPs)
scaffold0125 (234-290)||(12647-12703)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 32002953 - 32003159
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--ttctttcatcccgcccgagatgaaagtg 102  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||         | ||||| ||||||||||||||||||||    
T  32002953 ttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgtttttcaaaagaacatcctttcgtcccgcccgagatgaaagtg 32003052  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||| |||| |  |||||    
T  32003053 aactggtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatctcgactttgttttcactttgtgcttcttcttg-gaaaat 32003151  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  32003152 ggtaatac 32003159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 25856612 - 25856426
Alignment:
Q  25 acttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttc-tttcatcccgcccgagatgaaagtgaactggtgtagggctttttgc 123  Q
    |||||| ||||||||||||||||||||||||||||| ||||||        || |||| | ||||||||| |||||||||||||||||||||||||||||    
T  25856612 actttttgttcaaataatgtttgtttgttgcttttctcttttcaaagaacatcctttcgttccgcccgaggtgaaagtgaactggtgtagggctttttgc 25856513  T
Q  124 ttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttct-agaaaaaatggtaatac 210  Q
    || ||||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||| |||||||  | ||||||||||||||    
T  25856512 tttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtg-tttttctctggaaaaatggtaatac 25856426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 21479435 - 21479222
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcg-tcttaatctcgactttgtt 174  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||| | || ||| |||||||| |    
T  21479435 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttttgatcccgactttgct 21479336  T
Q  175 ttcattttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatt 274  Q
    || |||||||||||||||| |  |||||||||||||                    |||||||||||||||||||||| ||||||||||||||||  |||    
T  21479335 tttattttgtgctttttcttg-gaaaatggtaatacaaaaaaccaaaaaatct---ttctttaatcattctcaaatatctgcataatcataacttatatt 21479240  T
Q  275 tacttgtcaaaatcaaca 292  Q
    ||||||||||||||||||    
T  21479239 tacttgtcaaaatcaaca 21479222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 20736961 - 20737084
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||  ||||  |||| || ||| ||||||||||||    
T  20736961 ctttcgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaaaattcgttttgatcccgactttgtttt 20737060  T
Q  177 cattttgtgctttttctagaaaaa 200  Q
    |||||||||||| |||| ||||||    
T  20737061 cattttgtgcttcttcttgaaaaa 20737084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 20741830 - 20741953
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||  ||||  |||| || ||| ||||||||||||    
T  20741830 ctttcgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaaaattcgttttgatcccgactttgtttt 20741929  T
Q  177 cattttgtgctttttctagaaaaa 200  Q
    |||||||||||| |||| ||||||    
T  20741930 cattttgtgcttcttcttgaaaaa 20741953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 20745519 - 20745642
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||  ||||  |||| || ||| ||||||||||||    
T  20745519 ctttcgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaaaattcgttttgatcccgactttgtttt 20745618  T
Q  177 cattttgtgctttttctagaaaaa 200  Q
    |||||||||||| |||| ||||||    
T  20745619 cattttgtgcttcttcttgaaaaa 20745642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 17679299 - 17679168
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||| ||| ||| |||| |||||||    
T  17679299 ctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgccttgatcccgaccttgtttt 17679201  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  17679200 tattttgtgctttttct-ggaaaaatggtaatac 17679168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 6666794 - 6666929
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggcttttt----gcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg 172  Q
    ||||| |||| |||||| |||||||||| | || |||||||||||    |||| | | ||| ||||||||||||||| ||||||||  ||| ||||||||    
T  6666794 ctttcgtcccacccgaggtgaaagtgaatttgtttagggctttttttttgctttatgtattttcatcattaatgaaa-ggtcgtctcgatcccgactttg 6666892  T
Q  173 ttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    |||| |||||||||||||||| | ||||||||||||||    
T  6666893 tttttattttgtgctttttct-ggaaaaatggtaatac 6666929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 20737112 - 20737171
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  20737112 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 20737171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 20741981 - 20742040
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  20741981 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 20742040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 20745670 - 20745729
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  20745670 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 20745729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 22160361 - 22160306
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggct-ttttgcttgaagaattgtca 137  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  22160361 tcccgcccgagatgaaagtgaactggtgtagggcttttttgctttaagaattgtca 22160306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 22160448 - 22160389
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttc 67  Q
    |||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  22160448 ttgacgttccttccgctactttttgttcaattaatgtttgtttgatgcttttcgcttttc 22160389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 32003190 - 32003248
Alignment:
Q  232 tctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  32003190 tctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 32003248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 39841950 - 39841819
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||||||||||||| | | ||| |||||||||||| || ||||| ||| ||| |||| |||||||    
T  39841950 ctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatggaa-ggtcgccttgatcccgaccttgtttt 39841852  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  39841851 tattttgtgctttttct-ggaaaaatggtaatac 39841819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 22092550 - 22092496
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||    
T  22092550 taatcattttcaaatatgtgcataatcttaactttcatttactcgtcaaaatcaa 22092496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 24703123 - 24703013
Alignment:
Q  88 cccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgt-catcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgc 186  Q
    ||||||||||||||||||| || |||| |||||||||| | | ||| | |||||||||| ||||  |||| || ||||||||||||||||  | |||||     
T  24703123 cccgagatgaaagtgaacttgtttaggtctttttgcttcatgtattttccatcattaat-aaaaattcgttttgatctcgactttgtttt--tattgtgt 24703027  T
Q  187 tttttctagaaaaa 200  Q
    ||||||||||||||    
T  24703026 tttttctagaaaaa 24703013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 9180 - 9386
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--ttctttcatcccgcccgagatgaaagtg 102  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||         | ||||| ||||||||||||||||||||    
T  9180 ttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttagcttttcaaaagaacatcctttcgtcccgcccgagatgaaagtg 9279  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    ||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || ||| |||||||||||||| ||||||||| |||| | ||||||    
T  9280 aactggtgtagggctttttgctttatgaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcactttgtgcttcttcttggaaaaat 9379  T
Q  203 ggtaata 209  Q
    |||||||    
T  9380 ggtaata 9386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 14817162 - 14816956
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--ttctttcatcccgcccgagatgaaagtg 102  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||         | ||||| ||||||||||||||||||||    
T  14817162 ttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttgtcgcttttcaaaaaaacatcctttcgtcccgcccgagatgaaagtg 14817063  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||| |  |||||    
T  14817062 aacttgtgtagggttttttgctttaagaattgtcatcattaataaaaaggtcgttttgatctcgactttgttttcattttgcgctttttcttg-gaaaat 14816964  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  14816963 ggtaatac 14816956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 19372034 - 19372166
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| | ||||||||||    
T  19372034 ctttcgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatccctactttgtttt 19372133  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
    |||||||||||| |||| |  |||||||||||||    
T  19372134 cattttgtgcttcttcttg-gaaaatggtaatac 19372166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 6201005 - 6200879
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||  || ||| |||||||| |||  ||||    
T  6201005 tcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgctttgatcccgactttgcttttgtttt 6200906  T
Q  183 gtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| |  |||||||||||||    
T  6200905 gtgctttttcttg-gaaaatggtaatac 6200879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 1958623 - 1958897
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttc-tttcatcccgcccgagatgaaagtgaa 104  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||||||||| | |||||        || |||| ||||| ||||||||||||  ||    
T  1958623 tgttgacgttccttccactactttttgttcaaataatgtttgtttgttgctttttgattttcaaaaaaaatcctttcgtcccgtccgagatgaaagcaaa 1958722  T
Q  105 ctggtgtagggctttttgcttgaagaattgtc-atcattaatgaaaag-gtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    || || |||||| |||||||| ||| ||| || ||||||||| ||||  ||||| || ||| ||||||||||||||||||||||||||||| | |||| |    
T  1958723 cttgtttagggcattttgcttcaagcattttccatcattaataaaaatagtcgttttgatcccgactttgttttcattttgtgctttttcttggaaaa-t 1958821  T
Q  203 ggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatttactt 279  Q
    ||||||||                  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1958822 ggtaatacaaaaaacaaaaaaaaat-tcttctttaatcattctcaaatatctgcataatcataactttcatttactt 1958897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 35072340 - 35072522
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttc-tttcatcccgcccgagatgaaagtgaact 106  Q
    |||| ||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||        || |||| |||||||| ||| |||||||||||    
T  35072340 ttgacgttccttccaccactttttgttcaaataatgtttgtttgttgcttttctcttttcaaagaacatcctttcgtcccgcccaagacgaaagtgaact 35072439  T
Q  107 ggtgtagggctttttgcttgaagaattgtcatcattaatgaaaag--gtcgtcttaatctcgactttgttttcattttgtgct 187  Q
      ||||||||| ||||||| | ||||||||||||||||| |||||  |||||||| ||| |||| ||| ||| ||||| ||||    
T  35072440 tatgtagggctctttgcttcatgaattgtcatcattaataaaaagaagtcgtcttgatcccgaccttgcttttattttatgct 35072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 22430731 - 22430847
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| || |||| || ||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||| || ||| ||  ||||||||    
T  22430731 ctttcgtctcgcctgatatgaaagtgaactggtgtaggactttttgctttaagaattgtcattattaataaaaaggtcgttttgatcccgtttttgtttt 22430830  T
Q  177 cattttgtgctttttct 193  Q
     ||||||||||| ||||    
T  22430831 tattttgtgcttcttct 22430847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 13467530 - 13467660
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  ||||||||| | || ||||||||||||||| | | ||| |||||||||||| |||||||||||| ||| |||| |||||||    
T  13467530 ctttcgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatg-aaaggtcgtcttgatcccgaccttgtttt 13467628  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  13467629 -attttgtgctttttct-ggaaaaatggtaatac 13467660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 13472524 - 13472654
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  ||||||||| | || ||||||||||||||| | | ||| |||||||||||| |||||||||||| ||| |||| |||||||    
T  13472524 ctttcgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatg-aaaggtcgtcttgatcccgaccttgtttt 13472622  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  13472623 -attttgtgctttttct-ggaaaaatggtaatac 13472654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 31543792 - 31543903
Alignment:
Q  97 aaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctaga 196  Q
    |||||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| ||||| |||||||||| ||    
T  31543792 aaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttttgctttttct-ga 31543889  T
Q  197 aaaaatggtaatac 210  Q
    ||||||||||||||    
T  31543890 aaaaatggtaatac 31543903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 2388424 - 2388554
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||||||||||||| | | ||| |||||||||||| ||||||||||| |||| |||| |||||||    
T  2388424 ctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatg-aaaggtcgtctcaatcccgaccttgtttt 2388522  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  2388523 -attttgtgctttttct-ggaaaaatggtaatac 2388554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 31555872 - 31556002
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||||||| ||| ||||||||||||    
T  31555872 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt 31555970  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  31555971 -attttgtgctttttct-ggaaaaatggtaatac 31556002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 19372186 - 19372245
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||| |||||||| ||||||||||||||||  | |||||||||||||||||    
T  19372186 ttctttaatcattgtcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 19372245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 22430883 - 22430942
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||| ||||||||||||    
T  22430883 ttctttaatcattctcaaatatctgcataatcataacttgtacttacctgtcaaaatcaa 22430942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 2339374 - 2339240
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat--gaaaaggtcgtcttaatctcgactttgtt 174  Q
    ||||| |||||||| ||| |||||||||||  ||||||||| ||||||| | ||||||| |||||||||   ||||||||||||| ||| |||| ||| |    
T  2339374 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgttatcattaataaaaaaaggtcgtcttgatcccgaccttgct 2339275  T
Q  175 ttcattttgtgct-ttttctagaaaaaatggtaatac 210  Q
    || ||||| |||| ||||||   ||||||||||||||    
T  2339274 tttattttatgctcttttct--gaaaaatggtaatac 2339240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 14816936 - 14816887
Alignment:
Q  237 aatcattctcaaatatttgcataatcataactttcatttacttgtcaaaa 286  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||||    
T  14816936 aatcattctcaaatgtctgcataatcataactttcatttagttgtcaaaa 14816887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 35072563 - 35072617
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||||||  | |||||||||||||||||    
T  35072563 taatcattttcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 35072617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 6200863 - 6200810
Alignment:
Q  237 aatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||| |||||||||||||| |  | |||||||||||||||||    
T  6200863 aatcattctcaaatatctgcataatcataacctatacttacttgtcaaaatcaa 6200810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 2339220 - 2339166
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||| |||| |||||||||||| |||  | |||||||||||||||||    
T  2339220 taatcattctcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 2339166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 22488094 - 22488124
Alignment:
Q  179 ttttgtgctttttctagaaaaaatggtaata 209  Q
    |||||||||||||||||||||||||||||||    
T  22488094 ttttgtgctttttctagaaaaaatggtaata 22488124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 9534 - 9743
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----ttctttcatcccgcccgagatgaaagt 101  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||            | ||||| |||||||||||||||||||    
T  9534 tgttgatgttcattccgctaccttttgttcaaataatgtttgtttgttgcttttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaagt 9633  T
Q  102 gaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttttcattttgtgctttttctagaaaaa 200  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||| |||| |||||||||||||||| | ||||    
T  9634 gaacttgtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgtcttgatcccgactttgttttttattttgtgctttttcttggaaaa 9733  T
Q  201 atggtaatac 210  Q
    ||||||||||    
T  9734 atggtaatac 9743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 9767 - 9826
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||| |||||| |||||||||||||| |  | |||||||||||||||||    
T  9767 ttctttaatcattctaaaatatctgcataatcataacctatacttacttgtcaaaatcaa 9826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 24650 - 24444
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--ttctttcatcccgcccgagatgaaagtg 102  Q
    ||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||         ||||||| ||||||||||||||||||||    
T  24650 ttgttgacgttcctcccgctactttttgttcaaaaaatgtttgtttgttgcttttcgcttttcaaaagaacattctttcgtcccgcccgagatgaaagtg 24551  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    ||||  ||||| ||||||| ||| ||||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||    
T  24550 aacttttgtagagcttttttctttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgctttttct-ggaaaaat 24452  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  24451 ggtaatac 24444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 24427 - 24366
Alignment:
Q  229 tcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||| ||||||||||| ||||||||||||||||  | |||| ||||||||||||    
T  24427 tcttctttaatcgttctcaaatatctgcataatcataacttgtacttacatgtcaaaatcaa 24366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 30987 - 30782
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttc-tttcatcccgcccgagatgaaagtgaa 104  Q
    |||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||        || |||| ||| ||||||| ||||||||||    
T  30987 tgttgacgttccgtccgctactttttgttcaaataatgtttgtctgttgcttttcgcttttcaaaaaacatcctttcgtcctgcccgaggtgaaagtgaa 30888  T
Q  105 ctggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttt-tctagaaaaaatg 203  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||| ||||| || ||| |||||||||||||||||||||||||| ||| |||||||||    
T  30887 ctggtgtagagctttttgctttaagaattgtcatcattaataaaaaagtcgttttgatcccgactttgttttcattttgtgcttttctctggaaaaaatg 30788  T
Q  204 gtaata 209  Q
    ||||||    
T  30787 gtaata 30782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 30764 - 30704
Alignment:
Q  231 ttctttaa-tcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||||||||| |||||||| |||||||  | |||||||||||||||||    
T  30764 ttctttaaatcattctcaaatatctgcataattataacttgtacttacttgtcaaaatcaa 30704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 19974 - 19768
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttc-tttcatcccgcccgagatgaaagtgaa 104  Q
    |||||| |||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||        || |||| |||| |||||||||||||||||    
T  19974 tgttgacgttcattccactactttttgttcaaataatgtttgtttgttgtttttcgcttttcaaaaaaaatcctttcgtcccacccgagatgaaagtgaa 19875  T
Q  105 ctggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgct-ttttctagaaaaaatg 203  Q
    || ||||| |||||||||||| ||||||||||||||||||| |||| ||||| || ||| ||||||||||||||||||||||| |||||| |||||||||    
T  19874 cttgtgtatggctttttgctttaagaattgtcatcattaataaaaatgtcgttttgatcccgactttgttttcattttgtgcttttttcttgaaaaaatg 19775  T
Q  204 gtaatac 210  Q
    |||||||    
T  19774 gtaatac 19768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 19744 - 19688
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  19744 taatcattttcaaatgtctgcataatcataactttcatttacttgtcaaaatcaaca 19688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 99649 - 99853
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--ttctttcatcccgcccgagatgaaagtg 102  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||         | ||||| ||||||||||| ||||||||    
T  99649 ttgttgacgttccttccgctactttttgttcaaataatgtttgtctgttgctttacacttttcaaaaaaacatcctttcgtcccgcccgaggtgaaagtg 99748  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttt-tctagaaaaaa 201  Q
    ||||||||||||||||||||||| |||||||||||||| |||| |||||||||| || | | |||||||||||||||||||||||||| ||| |||||||    
T  99749 aactggtgtagggctttttgctttaagaattgtcatcactaataaaaaggtcgttttgaacccgactttgttttcattttgtgcttttctctggaaaaaa 99848  T
Q  202 tggta 206  Q
    |||||    
T  99849 tggta 99853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 99874 - 99934
Alignment:
Q  231 ttctttaa-tcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  99874 ttctttaaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 99934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 15770263 - 15770056
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn---ttctttcatcccgcccgagatgaaagt 101  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||          | ||||| ||||||||||||| |||||    
T  15770263 ttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaaaacatcctttcgtcccgcccgagataaaagt 15770164  T
Q  102 gaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaa 201  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| || ||| | ||||| |||| ||||||||||| |||| |  ||||    
T  15770163 gaactggggtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccaactttatttttattttgtgcttcttcttg-gaaaa 15770065  T
Q  202 tggtaatac 210  Q
    |||||||||    
T  15770064 tggtaatac 15770056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 23882836 - 23882719
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  23882836 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 23882737  T
Q  176 tcattttgtgctttttct 193  Q
    | ||||||||||||||||    
T  23882736 ttattttgtgctttttct 23882719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 3427935 - 3427802
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||  |  ||| |||||||| |||    
T  3427935 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaaagtcgcttcgatcccgactttgcttt 3427836  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | ||||| |||||||||| | ||||||||||||||    
T  3427835 ttattttttgctttttct-ggaaaaatggtaatac 3427802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 42634515 - 42634302
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcg-tcttaatctcgactttgtt 174  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||| | || ||| |||||||| |    
T  42634515 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttttgatcccgactttgct 42634416  T
Q  175 ttcattttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatt 274  Q
    || |||||||||||||||| |  |||||||||||||                    |||||||||||||||||||||| ||||||||||||||||  | |    
T  42634415 tttattttgtgctttttcttg-gaaaatggtaatacaaaaaaccaaaaaatct---ttctttaatcattctcaaatatctgcataatcataacttatact 42634320  T
Q  275 tacttgtcaaaatcaaca 292  Q
    ||||||||||||||||||    
T  42634319 tacttgtcaaaatcaaca 42634302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 34136424 - 34136235
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn------ttctttcatcccgcccgagatgaaagt 101  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||             | ||||| |||||||||||||||||||    
T  34136424 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaaaaacatcctttcgtcccgcccgagatgaaagt 34136325  T
Q  102 gaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgcttttt 191  Q
    || ||  ||||||||||||||||| ||| ||| || ||||||||| |||||||||| || ||| ||||||| |||| ||||||||||||||    
T  34136324 gatcttatgtagggctttttgctttaagtattggttatcattaataaaaaggtcgttttgatcccgactttatttt-attttgtgcttttt 34136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 78 - 292
Target Start/End: Original strand, 8814465 - 8814677
Alignment:
Q  78 tttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcg-tcttaatctcgactttgttt 175  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||| |||| | || ||| |||||||| ||    
T  8814465 tttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaatgtcgtttttgatcccgactttgctt 8814564  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcattt 275  Q
    | |||||||||||||||| |  |||||||||||||                    |||||||||||||||||||||| ||||||||||||||||  | ||    
T  8814565 ttattttgtgctttttcttg-gaaaatggtaatacaaaaaaccaaaaaatct---ttctttaatcattctcaaatatctgcataatcataacttatactt 8814660  T
Q  276 acttgtcaaaatcaaca 292  Q
    |||||||||||||||||    
T  8814661 acttgtcaaaatcaaca 8814677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 13268065 - 13267861
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----ttctttcatcccgcccgagatgaaagtga 103  Q
    |||| |||||||||||||||||| |||||| |||| ||||||||||| |||||||||||            | ||||| ||||||||||||||||| |||    
T  13268065 ttgacgttccttccgctactttttgttcaattaatatttgtttgttgattttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaattga 13267966  T
Q  104 actggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
     || |||||||||||||||||| ||| ||| |||||| ||||| |||||||||| || ||| ||||||| |||| ||||||||||||||||   ||||||    
T  13267965 tcttgtgtagggctttttgctttaagtattggtcatctttaataaaaaggtcgtttttatcccgactttatttt-attttgtgctttttct--gaaaaat 13267869  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  13267868 ggtaatac 13267861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 27973051 - 27972920
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || |||||||||||||||   | ||| ||||||||||||||||||||| ||| ||| ||||||||||||    
T  27973051 ctttcgtcccacccgagacggaagtgaacttgtttagggctttttgcttttcgtattttcatcattaatgaaaaggtcg-cttgatcccgactttgtttt 27972953  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
      ||||||||||||||| | ||||||||||||||    
T  27972952 atttttgtgctttttct-ggaaaaatggtaatac 27972920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 5205916 - 5205785
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||||||||||  |   ||| |||||||||||||||||||||||||  || |||| || ||||    
T  5205916 ctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaaaggtcgtcttggtcccgaccttctttt 5205817  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  5205816 -attttgtgctttttct-ggaaaaatggtaatac 5205785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 38413435 - 38413566
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  ||||||||| | || ||||||||||||||| | | ||| |||||||||||| |||||||||||  ||| |||| | |||||    
T  38413435 ctttcgtcccacccgaggcgaaagtgaatttgtttagggctttttgcttcatgtattttcatcattaatg-aaaggtcgtctcgatcccgacctagtttt 38413533  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||| ||| ||||||||||||||||    
T  38413534 -attttgtgctttgtctggaaaaaatggtaatac 38413566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 3427760 - 3427704
Alignment:
Q  234 tttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  3427760 tttaatcattttcaaatatctgcataatcataactttcatttacatgtcaaaatcaa 3427704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 16269388 - 16269332
Alignment:
Q  234 tttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  16269388 tttaatcattttcaaatatctgcataatcataattttcatttacttgtcaaaatcaa 16269332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 842584 - 842718
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| |||||||| ||| |||||||||||  ||||||||| ||||||| | |||||||||||||||||  |||| |||||||| ||| |||| ||| ||    
T  842584 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgctt 842683  T
Q  176 tcattttgtgct-ttttctagaaaaaatggtaatac 210  Q
    | ||||| |||| |||||| ||||||||||| ||||    
T  842684 ttattttatgctcttttct-gaaaaaatggtgatac 842718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 849760 - 849894
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| |||||||| ||| |||||||||||  ||||||||| ||||||| | |||||||||||||||||  |||| |||||||| ||| |||| ||| ||    
T  849760 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgctt 849859  T
Q  176 tcattttgtgct-ttttctagaaaaaatggtaatac 210  Q
    | ||||| |||| |||||| ||||||||||| ||||    
T  849860 ttattttatgctcttttct-gaaaaaatggtgatac 849894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 1207764 - 1207898
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| |||||||| ||| |||||||||||  ||||||||| ||||||| | |||||||||||||||||  |||| |||||||| ||| |||| ||| ||    
T  1207764 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgctt 1207863  T
Q  176 tcattttgtgct-ttttctagaaaaaatggtaatac 210  Q
    | ||||| |||| |||||| ||||||||||| ||||    
T  1207864 ttattttatgctcttttct-gaaaaaatggtgatac 1207898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 13835265 - 13835362
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||  ||| |||| ||||||| |||||||||||||||| | ||||||||||||||    
T  13835265 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtctcgatcccgaccttgtttttattttgtgctttttct-ggaaaaatggtaatac 13835362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 15770037 - 15769978
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  15770037 ttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 15769978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 23882684 - 23882625
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  23882684 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 23882625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 12587831 - 12587881
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaa 286  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  12587831 taatcattttcaaatatctgcataatcataactttcatttacttgtcaaaa 12587881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 34136192 - 34136134
Alignment:
Q  232 tctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||| |||||||||||||||||||||  | |||||||||||||||||    
T  34136192 tctttaatcattctcatatatttgcataatcataacttgtacttacttgtcaaaatcaa 34136134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 4944656 - 4944525
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||||||  ||| |||||||||||     
T  4944656 ctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtctcgatcccgactttgtttc 4944558  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     ||||||| |||||||| | ||||||||||||||    
T  4944557 tattttgtactttttct-ggaaaaatggtaatac 4944525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 27437797 - 27437928
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||||||||||  |   ||| |||||||||||||||||| ||||||  || |||| || ||||    
T  27437797 ctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaaaggccgtcttggtcccgaccttctttt 27437896  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  27437897 -attttgtgctttttct-ggaaaaatggtaatac 27437928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 16269534 - 16269420
Alignment:
Q  96 gaaagtgaactggtgtagggctttttgcttgaagaattgtc-atcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttcta 194  Q
    ||||||||||| |||||||||| ||||||| ||| ||  || ||||||||| |||| ||||  || ||| ||||||||||| ||||| |||||||||||     
T  16269534 gaaagtgaacttgtgtagggctctttgctttaagtatcttccatcattaataaaaaagtcgctttgatcccgactttgttt-catttcgtgctttttctt 16269436  T
Q  195 gaaaaaatggtaatac 210  Q
    | ||||||||||||||    
T  16269435 ggaaaaatggtaatac 16269420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 565937 - 565808
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||||||| ||| ||||||||||||    
T  565937 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctt-atgtattttcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt 565840  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  565839 -attttgtgctttttct-ggaaaaatggtaatac 565808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 16486273 - 16486177
Alignment:
Q  113 gggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||| | ||||| ||||||||||| || ||||||| || ||| |||||| ||||| |||||||||||||| | | |||||| |||||||    
T  16486273 gggctttttgctttatgaattttcatcattaataaagaggtcgttttgatcccgacttcgtttt-attttgtgcttttttttggaaaaatcgtaatac 16486177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 13267843 - 13267784
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||| |||| |||||||||||| |||  | |||||||||||||||||    
T  13267843 ttctttaatcattctcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 13267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 842735 - 842788
Alignment:
Q  237 aatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||| | ||||||||||||||  | |||||||||||||||||    
T  842735 aatcattctcaaatatctacataatcataacttatacttacttgtcaaaatcaa 842788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 849911 - 849964
Alignment:
Q  237 aatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||| | ||||||||||||||  | |||||||||||||||||    
T  849911 aatcattctcaaatatctacataatcataacttatacttacttgtcaaaatcaa 849964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 1207915 - 1207968
Alignment:
Q  237 aatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||| | ||||||||||||||  | |||||||||||||||||    
T  1207915 aatcattctcaaatatctacataatcataacttatacttacttgtcaaaatcaa 1207968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 29025987 - 29026117
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | |||||| || || ||||||||||||||| | | ||| ||||||||||||||| || | |||  ||| |||| || ||||    
T  29025987 ctttcgtcccacccgagacggaagtgagcttgtttagggctttttgctttacgtattttcatcattaatgaaa-ggccatctcgatcccgaccttctttt 29026085  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  29026086 -attttgtgctttttct-ggaaaaatggtaatac 29026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 12587676 - 12587807
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtc-atcattaatgaaaaggtcgtcttaatctcgactttgtt- 174  Q
    ||||| |||||||| ||  |||||| ||||  | ||||||||||||||| | | ||| || ||||||||| |||||||||  |  ||| |||||||| |     
T  12587676 ctttcgtcccgcccaaggcgaaagttaactaatttagggctttttgcttcaggcattctccatcattaat-aaaaggtcgcttcgatcccgactttgctc 12587774  T
Q  175 ttcattttgtgctttttctagaaaaaatggtaa 207  Q
    || ||||||||||||||||||||||||||||||    
T  12587775 tttattttgtgctttttctagaaaaaatggtaa 12587807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 1546028 - 1546235
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn---ttctttcatcccgcccgagatgaaagt 101  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||          | ||||| ||||||||||||| |||||    
T  1546028 ttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaaaacatcctttcgtcccgcccgagataaaagt 1546127  T
Q  102 gaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaa 201  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| || ||| | ||||| |||| ||||||||||| |||| |  ||||    
T  1546128 gaactggggtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccaactttatttttattttgtgcttcttcttg-gaaaa 1546226  T
Q  202 tggtaatac 210  Q
    |||||||||    
T  1546227 tggtaatac 1546235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 19716417 - 19716620
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttc-tttcatcccgcccgagatgaaagtgaact 106  Q
    |||| ||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||        || |||| ||||||| ||| ||||||||||||    
T  19716417 ttgacgttccttccaccactttttgttcaaataatgtttgtttgttgcttttctcttttcaaagaacatcctttcgtcccgcctgaggtgaaagtgaact 19716516  T
Q  107 ggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttt-tctagaaaaaatggt 205  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||||| ||||||||||||||||||| ||| | |||||||||    
T  19716517 ggtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccgacttggttttcattttgtgcttttctct-ggaaaaatggt 19716615  T
Q  206 aatac 210  Q
    |||||    
T  19716616 aatac 19716620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 24146946 - 24146813
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| || ||| ||||||| ||||    
T  24146946 ctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaaggtcgttttgatcccgactttatttt 24146847  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||||| | ||||||||||||||    
T  24146846 cattttgtgctttttcttggaaaaatggtaatac 24146813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 27071579 - 27071373
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn---ttctttcatcccgcccgagatgaaagtg 102  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||           | ||||| | |||||||||| |||||||    
T  27071579 tgttgacgttccttccgctactttttgttcaattaatgtttgtttgttacttttcgcttttaaaaaaaaacatcctttcgttccgcccgagacgaaagtg 27071480  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||| ||||| || ||| |||||||||||||| ||||||||| |||| |  |||||    
T  27071479 aacttgtgtagggctttttgctttaagaattgtcatcattaataaaaaagtcgttttgatcccgactttgttttcactttgtgcttcttcttg-gaaaat 27071381  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  27071380 ggtaatac 27071373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 22776507 - 22776340
Alignment:
Q  14 ttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn-----ttctttcatcccgcccgagatgaaagtgaactgg 108  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||            | ||||||||||||||||||||||||||| || |    
T  22776507 ttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaaaacatcctttcatcccgcccgagatgaaagtgatcttg 22776408  T
Q  109 tgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||| ||||    
T  22776407 tgtagggttttttgctttaagatttgtcatcattaataaaaaggtcgtcttgatctcgactttttttt 22776340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 22326682 - 22326955
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn-ttctttcatcccgcccgagatgaaagtgaa 104  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||        ||||||| | ||| ||||||||||||  ||    
T  22326682 tgttgacgttccttccactactttttgttcaaataatgtttgtttgttgctttttgcttttcaaaaaaaattctttcgttccgtccgagatgaaagcaaa 22326781  T
Q  105 ctggtgtagggctttttgcttgaagaattgtc-atcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatg 203  Q
    || || |||||| |||||||| ||| ||| || ||||||||| |||| ||||| || ||| ||||||||||||||||||||||||||||| |  ||||||    
T  22326782 cttgtttagggcattttgcttcaagcattttccatcattaataaaaaagtcgttttgatcccgactttgttttcattttgtgctttttcttg-gaaaatg 22326880  T
Q  204 gtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatttactt 279  Q
    |||||||                  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22326881 gtaatac-aaaaaacaaaaaaaaaatcttctttaatcattctcaaatatctgcataatcataactttcatttactt 22326955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 20456276 - 20456160
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||| | || ||| ||||||||||||    
T  20456276 ctttcgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattatcatcattaataaaaaggtcattttgatcccgactttgtttt 20456177  T
Q  177 cattttgtgctttttct 193  Q
    |||||||||||| ||||    
T  20456176 cattttgtgcttcttct 20456160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 16821051 - 16820918
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  16821051 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 16820952  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | |||||||||||||||| |  |||||||||||||    
T  16820951 ttattttgtgctttttcttg-gaaaatggtaatac 16820918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 20054065 - 20053934
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||| ||||| || ||| | ||||||||||    
T  20054065 ctttcgtcccgcccgagatgaaagtgaactggtgtagggcttttttctttcagaattgtcatcattaataaaaatgtcgttttgatcccaactttgtttt 20053966  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  20053965 -attttgtgctttttct-ggaaaaatggtaatac 20053934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 27514192 - 27514319
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||| || ||| |||||||| ||| ||||    
T  27514192 tcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcctcattaataaaaaggtcgttttgatcccgactttgcttttattt 27514291  T
Q  182 tgtgctttttctagaaaaaatggtaatac 210  Q
    |||||||||||| |  |||||||||||||    
T  27514292 tgtgctttttcttg-gaaaatggtaatac 27514319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 619400 - 619266
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcg-tcttaatctcgactttgtt 174  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||| | || ||| |||||||| |    
T  619400 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttttgatcccgactttgct 619301  T
Q  175 ttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    || |||||||||||||||| |  |||||||||||||    
T  619300 tttattttgtgctttttcttg-gaaaatggtaatac 619266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 18946744 - 18946534
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----------ttctttcatcccgcccgagatga 97  Q
    |||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||                 ||||||| |||||||||||||||    
T  18946744 ttgacgttccttccgctactttttgttcaattaaggtttgtttgttgcttttcgcttttcaaaaaaaaaaaaaaacattctttcgtcccgcccgagatga 18946645  T
Q  98 aagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctaga 196  Q
    |||||| || |||||||||||||||||| ||| ||| |||||||||||| |||||||||| || | | ||||||| |||| ||||||||||||||||       
T  18946644 aagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgagcccgactttatttt-attttgtgctttttct--g 18946548  T
Q  197 aaaaatggtaatac 210  Q
    ||||||||||||||    
T  18946547 aaaaatggtaatac 18946534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 18437709 - 18437822
Alignment:
Q  96 gaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctag 195  Q
    |||||||||||  ||||||||||||||||| ||| ||||| ||||||||| |||||||||| || ||| |||||||||||||||||||||||| |||| |    
T  18437709 gaaagtgaacttatgtagggctttttgctttaagcattgttatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgcttcttcttg 18437808  T
Q  196 aaaaaatggtaatac 210  Q
      |||||||||||||    
T  18437809 -gaaaatggtaatac 18437822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 219686 - 219630
Alignment:
Q  293 tttaacattgaaatttgagctgtctaatctcgatccaatgactgcctgcctacatac 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  219686 tttaacattgaaatttgagctgtctaatctcgatccaatgactgcctgcctacatac 219630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 27055105 - 27054973
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||||||||||  |   ||| |||||||||||||||||||||||||  || |||| || ||||    
T  27055105 ctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaaaggtcgtcttggtcccgaccttctttt 27055006  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| ||||||||||||||||    
T  27055005 -attttgtgctttttctggaaaaaatggtaatac 27054973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 20044131 - 20044031
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    |||||||||| |||  |||||||||||||| ||||||||||||||| || |||| |||||||||||||| |||||||||| || ||| ||||||| ||||    
T  20044131 ctttcatcccacccaggatgaaagtgaactagtgtagggctttttgttttaagatttgtcatcattaataaaaaggtcgttttgatcccgactttatttt 20044032  T
Q  177 c 177  Q
    |    
T  20044031 c 20044031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 5990227 - 5990358
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||| ||| |||||||| |||||||    
T  5990227 ctttcgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgccttgatctcgaccttgtttt 5990325  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  5990326 tattttgtgctttttct-ggaaaaatggtaatac 5990358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 18912395 - 18912528
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||| |||  ||||||||||  ||||||||| ||||||| | ||||||||||||||||| || |  |||| || ||| |||||||| |||    
T  18912395 ctttcgtcccgcccaagacaaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaatatatcgttttgatcccgactttgattt 18912494  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     ||||| ||||||||||   ||||||||||||||    
T  18912495 tattttatgctttttctctgaaaaatggtaatac 18912528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 20043995 - 20043934
Alignment:
Q  229 tcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  20043995 tcttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 20043934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 1546254 - 1546313
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  1546254 ttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 1546313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 16583001 - 16583095
Alignment:
Q  115 gctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| | | ||| ||||||||||||||| ||||||||   || |||| ||||||| |||||||||||||||| ||||||||||||||||    
T  16583001 gctttttgctttatgtattttcatcattaatgaaatggtcgtctcggtcccgaccttgtttt-attttgtgctttttctggaaaaaatggtaatac 16583095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 16612379 - 16612285
Alignment:
Q  115 gctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| | | ||| ||||||||||||||| ||||||||   || |||| ||||||| |||||||||||||||| ||||||||||||||||    
T  16612379 gctttttgctttatgtattttcatcattaatgaaatggtcgtctcggtcccgaccttgtttt-attttgtgctttttctggaaaaaatggtaatac 16612285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 16820900 - 16820841
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  16820900 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 16820841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 27514337 - 27514396
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  27514337 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 27514396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 27071336 - 27071278
Alignment:
Q  232 tctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  27071336 tctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 27071278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 619248 - 619187
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    ||||||||||| |||||||||| ||||||||||||||||  | |||||||||||||||||||    
T  619248 ttctttaatcagtctcaaatatctgcataatcataacttatacttacttgtcaaaatcaaca 619187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 24146794 - 24146737
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  24146794 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 24146737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 16638038 - 16638135
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| || |||| ||||||||||| |||| | ||||||||||||||    
T  16638038 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttatttttattttgtgcttattct-ggaaaaatggtaatac 16638135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 18437842 - 18437901
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||| |||||| ||||||||||||||||  | |||||||||||||||||    
T  18437842 ttctttaatcattcttaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 18437901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 20053915 - 20053860
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||  | || ||||||||||    
T  20053915 ttctttaatcattctcaaatatttgcataatcataacttgtacttgcttgtcaaaa 20053860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 20456122 - 20456063
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||| |||||||| ||||||||||||||||  | |||||||||||||||||    
T  20456122 ttctttaatcattgtcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 20456063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 28307172 - 28307282
Alignment:
Q  96 gaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctag 195  Q
    ||||||||| | || ||||||||||||||| | | ||| ||||||||| || |||||||| ||| ||| |||||||||||| |||||||||||||||| |    
T  28307172 gaaagtgaatttgtttagggctttttgctttatgtattttcatcattagtg-aaaggtcg-cttgatcccgactttgtttt-attttgtgctttttct-g 28307267  T
Q  196 aaaaaatggtaatac 210  Q
     ||||||||||||||    
T  28307268 gaaaaatggtaatac 28307282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 28355977 - 28356087
Alignment:
Q  96 gaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctag 195  Q
    ||||||||| | || ||||||||||||||| | | ||| ||||||||| || |||||||| ||| ||| |||||||||||| |||||||||||||||| |    
T  28355977 gaaagtgaatttgtttagggctttttgctttatgtattttcatcattagtg-aaaggtcg-cttgatcccgactttgtttt-attttgtgctttttct-g 28356072  T
Q  196 aaaaaatggtaatac 210  Q
     ||||||||||||||    
T  28356073 gaaaaatggtaatac 28356087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 22776274 - 22776215
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||| |||| ||| ||||||||||||  | |||||||||||||||||    
T  22776274 ttctttaatcattctcatatatctgcttaatcataacttgtacttacttgtcaaaatcaa 22776215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 18946503 - 18946449
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||| ||| |||||||| ||||||||||||||||  | |||||||||||||||||    
T  18946503 taattattttcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 18946449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 25502819 - 25502729
Alignment:
Q  117 tttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||| | | ||| |||||||||||| |||||||||||| ||| |||| ||| ||| |||||||||||||| | | ||||||||||||||    
T  25502819 tttttgctttatgtattttcatcattaatg-aaaggtcgtcttgatcccgaccttg-tttaattttgtgcttttt-ttggaaaaatggtaatac 25502729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 22162 - 21878
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----ttctttcatcccgcccgagatgaaagt 101  Q
    |||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||            | ||||| ||| |||| ||||||||||    
T  22162 tgttgacgttccttccgatactttttgttcaaataatgtttgtctgttgcttttcgcttttaaaaaaaaaacatcctttcgtcctgccctagatgaaagt 22063  T
Q  102 gaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaa 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||||||||||||| ||||||||| |||| |  ||||    
T  22062 gaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcactttgtgcttcttcttg-gaaaa 21964  T
Q  202 tggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||                  |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  21963 tggtaatac---aaaaaaccaaaaaattcttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 21878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 21691748 - 21692032
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----ttctttcatcccgcccgagatgaaagt 101  Q
    |||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||            | ||||| ||| |||| ||||||||||    
T  21691748 tgttgacgttccttccgatactttttgttcaaataatgtttgtctgttgcttttcgcttttaaaaaaaaaacatcctttcgtcctgccctagatgaaagt 21691847  T
Q  102 gaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaa 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||||||||||||| ||||||||| |||| |  ||||    
T  21691848 gaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcactttgtgcttcttcttg-gaaaa 21691946  T
Q  202 tggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||                  |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  21691947 tggtaatac---aaaaaaccaaaaaattcttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 21692032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 25529387 - 25529592
Alignment:
Q  6 tgttgatgttccttccgctacttttc-gttcaaataatgt--ttgtttgttgcttttcgcttttcnnnnnnnttctttcatcccgcccgagatgaaagtg 102  Q
    |||||| |||||||||||||||  || |||||||||||||  |||||||||||||||| | ||||       || |||| ||| |||||||||| |||||    
T  25529387 tgttgacgttccttccgctactcatctgttcaaataatgtgtttgtttgttgcttttcacgtttcaaaaaaattatttcgtcctgcccgagatgtaagtg 25529486  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||||||||||| |||||||||||||||| | ||||||    
T  25529487 aacttgtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt-attttgtgctttttct-ggaaaaat 25529584  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  25529585 ggtaatac 25529592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 1802145 - 1802278
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| || ||| ||||||| ||||    
T  1802145 ctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaaggtcgttttgatcccgactttatttt 1802244  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||||| | ||||||||||||||    
T  1802245 cattttgtgctttttcttggaaaaatggtaatac 1802278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 12391472 - 12391355
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  12391472 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 12391373  T
Q  176 tcattttgtgctttttct 193  Q
    | ||||||||||||||||    
T  12391372 ttattttgtgctttttct 12391355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 7258210 - 7257997
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcg-tcttaatctcgactttgtt 174  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||| | || ||| |||||||| |    
T  7258210 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgtttttgatcccgactttgct 7258111  T
Q  175 ttcattttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatt 274  Q
    || |||||||||||||||| |  |||||||||||||                    |||||||||||||||||||||| ||||||||||||||||  | |    
T  7258110 tttattttgtgctttttcttg-gaaaatggtaatacaaaaaaccaaaaaatct---ttctttaatcattctcaaatatctgcataatcataacttatact 7258015  T
Q  275 tacttgtcaaaatcaaca 292  Q
    ||||||||||||||||||    
T  7258014 tacttgtcaaaatcaaca 7257997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 292
Target Start/End: Original strand, 7790843 - 7791055
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaag-aattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||   |||||||||| || ||| || ||||||||    
T  7790843 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcatta---aaaaggtcgttttgatcccgcctttgttt 7790939  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcattt 275  Q
    ||| ||||||||| |||| |  |||||||||||||                  |||||||||||||||||||| ||| ||||||||||||||||  | ||    
T  7790940 tcactttgtgcttcttcttg-gaaaatggtaatacaaaaaaaaccaaaaaaattcttctttaatcattctcaagtatctgcataatcataacttatactt 7791038  T
Q  276 acttgtcaaaatcaaca 292  Q
    |||||||||||||||||    
T  7791039 acttgtcaaaatcaaca 7791055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 37581649 - 37581717
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat 145  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37581649 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaat 37581717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 36451089 - 36451220
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||| ||||||||| ||| || |||||||||||||||||| ||| ||| |||||| ||||| |||||||||| |||||| ||||||| |||    
T  36451089 ctttcgtcccgcctgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaaggtcgttttaatcccgactttattt 36451188  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | ||||||||||||||||   ||||||||||||||    
T  36451189 t-attttgtgctttttct--gaaaaatggtaatac 36451220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 20096895 - 20096765
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||| || |||||||||||||| ||| ||| ||| |||||||||||  |||||||||| || ||| ||||||| |||    
T  20096895 ctttcgtcccgcccgagatgaaagtgatcttgtgtagggcttttt-ctttaagtattggtcatcattaacaaaaaggtcgttttgatcccgactttattt 20096797  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | ||||||||||||||||   ||||||||||||||    
T  20096796 t-attttgtgctttttct--gaaaaatggtaatac 20096765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 27230391 - 27230267
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||| ||||||| ||||||||| |  | ||||||||||||||| | | ||| ||||||||||||||| ||||| ||| ||| |||||||||||| |||||    
T  27230391 tcccccccgagacgaaagtgaattcatctagggctttttgctttatgtattttcatcattaatgaaa-ggtcg-cttgatcccgactttgtttt-atttt 27230295  T
Q  183 gtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| ||||||||||||||||    
T  27230294 gtgctttttctggaaaaaatggtaatac 27230267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 29897501 - 29897600
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||| ||| |||||||||||  ||||||||||||||||| | ||| ||||||||||||| |||||||||| || ||| ||||||||||||    
T  29897501 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgcttcatgaactgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 29897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 33841694 - 33841564
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | || |||||| || |||||||||||||||   | ||| ||||||||||||||||||||| ||| ||| ||||||||||||    
T  33841694 ctttcgtcccacccgagacggaattgaacttgtttagggctttttgcttttcgtattttcatcattaatgaaaaggtcg-cttgatcccgactttgtttt 33841596  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  33841595 -attttgtgctttttct-ggaaaaatggtaatac 33841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 24961542 - 24961417
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||| ||||||  ||||||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| |||||    
T  24961542 tcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttatttt 24961444  T
Q  183 gtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||| | ||||||||||||||    
T  24961443 ttgctttttct-ggaaaaatggtaatac 24961417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 20096978 - 20096920
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgctttt 66  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  20096978 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgctttt 20096920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 20380808 - 20380931
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||| ||||||||||||||||| |  | ||||||||||||||| | | ||| ||||||||| || |||||||| ||| ||| |||||||||||| |||||    
T  20380808 tcccacccgagatgaaagtgaattcatctagggctttttgctttatgtattttcatcattagtg-aaaggtcg-cttgatcccgactttgtttt-atttt 20380904  T
Q  183 gtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| | ||||||||||||||    
T  20380905 gtgctttttct-ggaaaaatggtaatac 20380931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 22954778 - 22954719
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  22954778 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 22954719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 28847661 - 28847758
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| | ||||| |||||||||||||||| | ||||||||||||||    
T  28847661 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgacctcgtttttattttgtgctttttct-ggaaaaatggtaatac 28847758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 36451007 - 36451066
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttc 67  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  36451007 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgattttcgcttttc 36451066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 37581801 - 37581855
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||    
T  37581801 taatcattttcaaatatctgcataatcataactttcatttactcgtcaaaatcaa 37581855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 1802297 - 1802354
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  1802297 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 1802354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 11810190 - 11810060
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||||||| ||| ||||||||||||    
T  11810190 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt 11810092  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  11810091 -attttgtgctttttct-ggaaaaatggtaatac 11810060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 12177344 - 12177214
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||||||| ||| ||||||||||||    
T  12177344 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt 12177246  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  12177245 -attttgtgctttttct-ggaaaaatggtaatac 12177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 12391321 - 12391264
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  12391321 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 12391264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 21992600 - 21992469
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||||||  ||| |||| |||||||    
T  21992600 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa-ggtcgtctcgatcccgaccttgtttt 21992502  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| ||||||||||||||||    
T  21992501 -attttgtgctttttctggaaaaaatggtaatac 21992469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 26086114 - 26085984
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||||||| ||| ||||||||||||    
T  26086114 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa-ggtcgtcttgatcccgactttgtttt 26086016  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  26086015 -attttgtgctttttct-ggaaaaatggtaatac 26085984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 22954919 - 22954797
Alignment:
Q  89 ccgagatgaaagtgaactggtgtagggcttttt--gcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgc 186  Q
    |||||| |||||| ||||  |||||||||||||  |||| ||| || |||||||||||| |||||||||| || |||  |||||  |||| |||||||||    
T  22954919 ccgagacgaaagtaaacttatgtagggctttttttgctttaagtatggtcatcattaataaaaaggtcgttttgatcctgacttgatttt-attttgtgc 22954821  T
Q  187 tttttctagaaaaaatggtaatac 210  Q
    ||||| | ||||||||||||||||    
T  22954820 tttttatggaaaaaatggtaatac 22954797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 29897667 - 29897724
Alignment:
Q  233 ctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||| |||||||||||| |||  | |||||||||||||||||    
T  29897667 ctttaatcattctcaaatatctgcataatcatagcttgtacttacttgtcaaaatcaa 29897724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 20096736 - 20096682
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||||||  | |||||||||||||||||    
T  20096736 taatcattttcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 20096682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 21864197 - 21864064
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggcttttt-gcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| |||| ||||||| | ||||||| | || ||||||||||| |||| | | ||| ||||||||||| |||| ||||  ||  |  |||||||||||    
T  21864197 ctttcgtcccacccgagacggaagtgaatttgtttagggcttttttgctttatgtattttcatcattaattaaaaagtcgctttgtttccgactttgttt 21864098  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | |||||||||||||||| | ||||||||||||||    
T  21864097 ttattttgtgctttttct-ggaaaaatggtaatac 21864064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 23639998 - 23640062
Alignment:
Q  135 tcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaa 200  Q
    |||||||||||||||||||||||||  || |||| || |||| |||||||||||||||| ||||||    
T  23639998 tcatcattaatgaaaaggtcgtcttggtcccgaccttctttt-attttgtgctttttctggaaaaa 23640062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 23832888 - 23832824
Alignment:
Q  135 tcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaa 200  Q
    |||||||||||||||||||||||||  || |||| || |||| |||||||||||||||| ||||||    
T  23832888 tcatcattaatgaaaaggtcgtcttggtcccgaccttctttt-attttgtgctttttctggaaaaa 23832824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 36451238 - 36451297
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||| || |||| |||||||||||| |||  | |||||||||||||||||    
T  36451238 ttctttaatcattcgcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 36451297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 11342 - 11520
Alignment:
Q  17 cttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--ttctttcatcccgcccgagatgaaagtgaactggtgtagg 114  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||         |  |||||||||||||||||||||||||||||||||||||    
T  11342 cttccgctactttttgttcaaataatgtttgtttgtttcttttcgcttttcaaaaaaacgtcatttcatcccgcccgagatgaaagtgaactggtgtagg 11441  T
Q  115 gctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttct 193  Q
    ||||||||||| |||| |||||||||||||| |||||||||| || ||| |||||||||||| ||||||| ||| ||||    
T  11442 gctttttgctttaagatttgtcatcattaataaaaaggtcgttttgatcccgactttgtttttattttgttcttcttct 11520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 11554 - 11613
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  11554 ttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 11613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 15623621 - 15623827
Alignment:
Q  6 tgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn---ttctttcatcccgcccgagatgaaagtg 102  Q
    |||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||          | ||||| ||| |||| |||||||||||    
T  15623621 tgttgacgttccttctgctactttttgttcaaataatgtttgtctgttgcttttcgcttttcaaaaaaaacatcctttcgtcctgccctagatgaaagtg 15623720  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaat 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| || ||||||||||| ||||||||| |||| |  |||||    
T  15623721 aactggtgtagggctttttgcttaaagaattgtcatcattaataaaaaggtcgttttgatcccgcctttgttttcactttgtgcttcttcttg-gaaaat 15623819  T
Q  203 ggtaatac 210  Q
    ||||||||    
T  15623820 ggtaatac 15623827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 14421587 - 14421721
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggcttttt-gcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||| |||||||||| || ||| |||||||||||    
T  14421587 ctttcgtcccgcccgagatgaaagtgaactggtgaagggcttttttgctttaagaattgtcattattaataaaaaggtcgttttgatcccgactttgttt 14421686  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    |||||||||||||||||| | ||||||||||||||    
T  14421687 tcattttgtgctttttcttggaaaaatggtaatac 14421721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 30093170 - 30092967
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----ttctttcatcccgcccgagatgaaagtga 103  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||            | ||||| |||||||||||||||||||||    
T  30093170 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttaaaaaaaaaacatcctttcgtcccgcccgagatgaaagtga 30093071  T
Q  104 actggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatg 203  Q
     || |||||||| ||||||||| ||||||||||||||||||| |||||||||| || ||| ||||||| |||| ||||||||||||||||   |||||||    
T  30093070 tcttgtgtagggttttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttatttt-attttgtgctttttct--gaaaaatg 30092974  T
Q  204 gtaatac 210  Q
    |||||||    
T  30092973 gtaatac 30092967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 70903 - 71072
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttctttcatcccgcccgagatgaaagtgaactg 107  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||       | ||||| ||||||||||||||||||||| ||     
T  70903 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaatcctttcgtcccgcccgagatgaaagtgatctt 71002  T
Q  108 gtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    |||||||||||||||||| ||| ||| |||||||||||| |||||||||| || ||| ||||||| ||||    
T  71003 gtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgatcccgactttatttt 71072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 15533371 - 15533238
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| || ||| |||||||  |||    
T  15533371 ctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaaggtcgttttgatcccgactttacttt 15533272  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||||| | ||||||||||||||    
T  15533271 cattttgtgctttttcttggaaaaatggtaatac 15533238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 8620466 - 8620598
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||||||  |||    
T  8620466 ctttcatcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaaggtcgttttaatcccgactttacttt 8620565  T
Q  177 cattttgtgctttttctagaaaaaatggtaata 209  Q
    |||||||||||||||||   |||||||||||||    
T  8620566 cattttgtgctttttcttagaaaaatggtaata 8620598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 6198427 - 6198561
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaa-ttgtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||| || ||| || ||||  ||    
T  6198427 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaaggtcgttttgatcccgcctttactt 6198526  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    |||||||||||||||||| | ||||||||||||||    
T  6198527 tcattttgtgctttttcttggaaaaatggtaatac 6198561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 21611979 - 21612112
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  21611979 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 21612078  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | |||||||||||||||| |  |||||||||||||    
T  21612079 ttattttgtgctttttcttg-gaaaatggtaatac 21612112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 46396743 - 46396609
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    |||||||||||||   || ||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| || ||| ||||||| ||||    
T  46396743 ctttcatcccgcctaggacgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaaggtcgttttgatcccgactttatttt 46396644  T
Q  177 cattttgtgctttttc-tagaaaaaatggtaatac 210  Q
    |||||||||||||||| | ||||||||||||||||    
T  46396643 cattttgtgctttttcttggaaaaaatggtaatac 46396609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 8808550 - 8808667
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  8808550 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 8808649  T
Q  176 tcattttgtgctttttct 193  Q
    | ||||||||||||||||    
T  8808650 ttattttgtgctttttct 8808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 12476418 - 12476128
Alignment:
Q  5 ttgttgatgttccttccgctacttttc-gttcaaataa--tgtttgtttgttgcttttcgcttttc--nnnnnnnttctttcatcccgcccgagatgaaa 99  Q
    |||||||||||||||||||||||  || ||||||||||  ||||||||||||||||   |||||||         | | ||| ||| |||||| | ||||    
T  12476418 ttgttgatgttccttccgctactcatctgttcaaataatgtgtttgtttgttgcttgctgcttttcaaaaataaatacattcgtcctgcccgatacgaaa 12476319  T
Q  100 gtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttc-tagaaa 198  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||| || ||| |||||||||||| ||| ||||||||||| | | ||    
T  12476318 gtgaacttgtgtagggctttttgctttaagaattgtaatcattaataaaaaggtcgttttgatcccgactttgtttttattctgtgctttttcttgggaa 12476219  T
Q  199 aaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||                  |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  12476218 aaatggtaatac-aaaaaaaaccaaaaaactcttctttaatcattctcaaatatctgcataatcataacttgcacttacttgtcaaaatcaa 12476128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 290
Target Start/End: Original strand, 30017094 - 30017305
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttt 175  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||  |  ||| |||||||| |||    
T  30017094 ctttcgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaagaattgtcatcattaataaaaaagtcgcttcgatcccgactttgcttt 30017193  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcattt 275  Q
    | ||||| |||||||||| | ||||||||||||||                  |||  |||||||||| |||||||| ||||||||||||||||||||||    
T  30017194 ttattttttgctttttct-ggaaaaatggtaatacaaaaaacccaaaaaaaaatct--tttaatcattttcaaatatctgcataatcataactttcattt 30017290  T
Q  276 acttgtcaaaatcaa 290  Q
    || ||||||||||||    
T  30017291 acatgtcaaaatcaa 30017305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 33568619 - 33568803
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn-----ttctttcatcccgcccgagatgaaagtg 102  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||| |||||||||||             | ||||| ||||||||||||||||||||    
T  33568619 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgattttcgcttttaaaaaaaaaaacatcctttcgtcccgcccgagatgaaagtg 33568718  T
Q  103 aactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgct 187  Q
    | || |||||||||||||||||| | ||||||||||||||||| |||| |||||||| ||| |||| ||| ||| ||||| ||||    
T  33568719 atcttgtgtagggctttttgcttcatgaattgtcatcattaataaaaaagtcgtcttgatcccgaccttgcttttattttatgct 33568803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 3680525 - 3680658
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttt 175  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||  |  ||| |||||||| |||    
T  3680525 ctttcgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaagaattgtcatcattaataaaaaagtcgcttcgatcccgactttgcttt 3680624  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | ||||| |||||||||| | ||||||||||||||    
T  3680625 ttattttttgctttttct-ggaaaaatggtaatac 3680658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 8608944 - 8609157
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----------ttctttcatcccgcccgagatga 97  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||                 | || || ||||||| |||||||    
T  8608944 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaaaaaaaaacatcctatcgtcccgcctgagatga 8609043  T
Q  98 aagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttttcattttgtgctttttctag 195  Q
    |||||| || |||||||||||||||||| ||| ||| |||||||||||| |||||||||| || ||| |||||||| |||| |||||||||||||||| |    
T  8609044 aagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgatcccgactttgctttttattttgtgctttttct-g 8609142  T
Q  196 aaaaaatggtaatac 210  Q
     ||||||||||||||    
T  8609143 gaaaaatggtaatac 8609157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 23285452 - 23285242
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn----------ttctttcatcccgcccgagatga 97  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||                 | ||||| |||||||||||||||    
T  23285452 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaagaaattaaaaaatcctttcgtcccgcccgagatga 23285353  T
Q  98 aagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctaga 196  Q
    |||||| || |||||||||||||||||| ||| ||| |||||||||||| ||||||| || || ||| ||||||| |||| ||||||||||||||||       
T  23285352 aagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggttgttttgatcccgactttatttt-attttgtgctttttct--g 23285256  T
Q  197 aaaaatggtaatac 210  Q
    ||||||||||||||    
T  23285255 aaaaatggtaatac 23285242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 11184199 - 11184332
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| |||||||||||| |||||||| || ||||| |||||||||||| ||| ||| |||||||||||| |||||||||| || ||| |||||||||||    
T  11184199 ctttcgtcccgcccgagaggaaagtgatcttgtgtatggctttttgctttaagtatttgtcatcattaataaaaaggtcgttttgatcccgactttgttt 11184298  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | | |||||||||||||| | ||||||||||||||    
T  11184299 ttagtttgtgctttttcttg-aaaaatggtaatac 11184332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 14884607 - 14884508
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    |||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||| || ||| ||||||| ||||    
T  14884607 ctttcagcctgcccgagatgaaagtgaacaggtgtagggctttttgctttaagaattgtcatcattaataaaaaagtcgttttgatcccgactttatttt 14884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 13109037 - 13108906
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||| ||||| |||||||||| || ||| ||||||| |||    
T  13109037 ctttcgtcccgcccgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaaggtcgttttgatcccgactttattt 13108938  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | ||||||||||||||||   ||||||||||||||    
T  13108937 t-attttgtgctttttct--gaaaaatggtaatac 13108906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 8609182 - 8609241
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  8609182 ttctttaatcattctcaaatatctgcataatcataacttatatttacttgtcaaaatcaa 8609241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 10719040 - 10718909
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||||||||||  |   ||| |||||||||||||||||||||||||  || |||| || ||||    
T  10719040 ctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaaaggtcgtcttggtcccgaccttctttt 10718941  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  10718940 -attttgtgctttttct-ggaaaaatggtaatac 10718909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 14884691 - 14884630
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgctttt 66  Q
    ||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  14884691 ttgttgacgttccttccactaccttttgttcaaataatgtttgtttgttgcttttcgctttt 14884630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 15681419 - 15681289
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||| | |||||   | ||| ||||||||||||||||||||| ||| ||| ||||||||||||    
T  15681419 ctttcgtcccacccgagacggaagtgaacttgtttagggctctatgcttttcgtattttcatcattaatgaaaaggtcg-cttgatcccgactttgtttt 15681321  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  15681320 -attttgtgctttttct-ggaaaaatggtaatac 15681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 41002131 - 41002242
Alignment:
Q  97 aaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctaga 196  Q
    |||||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| ||||| |||||||||| |     
T  41002131 aaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttttgctttttct-gg 41002228  T
Q  197 aaaaatggtaatac 210  Q
    ||||||||||||||    
T  41002229 aaaaatggtaatac 41002242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 41010913 - 41011024
Alignment:
Q  97 aaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctaga 196  Q
    |||||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| ||||| |||||||||| |     
T  41010913 aaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttttgctttttct-gg 41011010  T
Q  197 aaaaatggtaatac 210  Q
    ||||||||||||||    
T  41011011 aaaaatggtaatac 41011024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 3680693 - 3680749
Alignment:
Q  234 tttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  3680693 tttaatcattttcaaatatctgcataatcataactttcatttacatgtcaaaatcaa 3680749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 3407994 - 3408053
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  3407994 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 3408053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 8201849 - 8201775
Alignment:
Q  135 tcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| ||||||||  ||| |||| ||||||| |||||||||||||||| ||||||||||||||||    
T  8201849 tcatcattaatgaaa-ggtcgtctcgatcccgaccttgtttttattttgtgctttttctggaaaaaatggtaatac 8201775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 8808701 - 8808760
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  8808701 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 8808760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 12557791 - 12557850
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttc 67  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  12557791 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcacttttc 12557850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 21612130 - 21612189
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  21612130 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 21612189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 33568841 - 33568900
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||    
T  33568841 ttctttaatcattctcaaatatctgcataatcataacttttacttacttgtcaaattcaa 33568900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 6198580 - 6198637
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  6198580 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 6198637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 8620618 - 8620675
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  8620618 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 8620675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 15533219 - 15533162
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  15533219 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 15533162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 15623847 - 15623908
Alignment:
Q  229 tcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||| ||| ||||||||||||||||  | |||||||||||||||||    
T  15623847 tcttctttaatcattctcaagtatctgcataatcataacttgtacttacttgtcaaaatcaa 15623908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 25267301 - 25267431
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||  || |||||| | || ||||| ||||||||| | | ||| ||||||||| ||||| ||||| ||| ||| ||||||||||||    
T  25267301 ctttcgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa-ggtcg-cttgatcccgactttgtttt 25267398  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| ||||||||||||||||    
T  25267399 -attttgtgctttttctggaaaaaatggtaatac 25267431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 46396591 - 46396534
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  46396591 ttaatcattcacaaatatctgcataatcataacttttgtttacttgtcaaaatcaaca 46396534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 27884277 - 27884402
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| ||||||||||| || ||||| ||||||||| | | ||| ||||||||| |  |||||||||||  ||| ||||||||||||    
T  27884277 ctttcgtcccacccgagacgaaagtgaacttgtttaggg-tttttgctttatgtattttcatcattagttgaaaggtcgtctcgatcccgactttgtttt 27884375  T
Q  177 cattttgtgctttttctagaaaaaatggt 205  Q
     | |||||||||||||| |||||||||||    
T  27884376 ta-tttgtgctttttct-gaaaaaatggt 27884402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 12557876 - 12557943
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaa 150  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| | ||||||| ||||||||| ||||    
T  12557876 tcccgcccgagatgaaagtgaacttatgtagggctctttgcttcatgaattgttatcattaataaaaa 12557943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 11184135 - 11184181
Alignment:
Q  19 tccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttt 65  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  11184135 tccgctactttttgttcaattaatgtttgtttgttgcttttcgcttt 11184181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 13108888 - 13108829
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||| |||| |||||||||||| |||  | |||||||||||||||||    
T  13108888 ttctttaatcattctcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 13108829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 14421741 - 14421796
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaa 286  Q
    |||||||||||||||||||||| ||||||||||||||||  |  ||||||||||||    
T  14421741 ttctttaatcattctcaaatatctgcataatcataacttgtacatacttgtcaaaa 14421796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 17929629 - 17929744
Alignment:
Q  90 cgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgcttt 189  Q
    |||||||||||| || | || ||||| ||||||||| | | ||| |||||||||||| |||||||||||  ||| |||||||||||| |||| |||||||    
T  17929629 cgagatgaaagttaaattgtttaggg-tttttgctttatgtattttcatcattaatg-aaaggtcgtctcgatcccgactttgtttt-atttcgtgcttt 17929725  T
Q  190 ttctagaaaaaatggtaata 209  Q
    |||| | |||||||||||||    
T  17929726 ttct-ggaaaaatggtaata 17929744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 3241752 - 3241631
Alignment:
Q  78 tttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttc 177  Q
    |||| |||| || |||| ||||| | ||| || ||||||||||||||  | | ||| |||||| |||| ||||| |||| || ||| ||||||||||||     
T  3241752 tttcttcccacctgagacgaaaggggacttgtttagggctttttgctatacgtattttcatcactaataaaaag-tcgttttgatcccgactttgttttt 3241654  T
Q  178 attttgtgctttttctagaaaaa 200  Q
    |||||||||||||||| ||||||    
T  3241653 attttgtgctttttctggaaaaa 3241631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 14663574 - 14663501
Alignment:
Q  135 tcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||||||| |||| ||||  |||  |||||| |||||||||||||||| | ||||||||||||||    
T  14663574 tcatcattaatgaaaaggtggtctcaatcctgaccctgtttt-attttgtgctttttct-ggaaaaatggtaatac 14663501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 71129 - 71183
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||| |||| |||||||||||| |||  | |||||||||||||||||    
T  71129 taatcattctcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 71183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 11184352 - 11184406
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||| |||| |||||||||||| |||  | |||||||||||||||||    
T  11184352 taatcattctcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 11184406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 12558027 - 12558081
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||| |||| |||||||||||| |||  | |||||||||||||||||    
T  12558027 taatcattctcatatatctgcataatcatagcttgtacttacttgtcaaaatcaa 12558081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 13109110 - 13109052
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgctttt 66  Q
    |||| |||||||||||||||||| |||||| |||| |||| |||||| ||||| |||||    
T  13109110 ttgacgttccttccgctactttttgttcaattaatttttgcttgttgattttcactttt 13109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 24693180 - 24693384
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttctttcatcccgcccgagatgaaagtgaa 104  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||       |  |||| |||||||||||| ||||||| |    
T  24693180 ttgttgacgttccttccactactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaaatcatttcgtcccgcccgagacgaaagtgga 24693279  T
Q  105 ctggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatgg 204  Q
    ||  |||||||||| |||||| ||| || |||||||||||| |||||||||| |  ||| |||||||||||||||||||||||| |||| |  |||||||    
T  24693280 cttatgtagggcttcttgctttaagtatggtcatcattaataaaaaggtcgtttcgatcccgactttgttttcattttgtgcttcttcttg-gaaaatgg 24693378  T
Q  205 taatac 210  Q
    ||||||    
T  24693379 taatac 24693384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 24702164 - 24702368
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnnttctttcatcccgcccgagatgaaagtgaa 104  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||       | ||||  ||  ||| |||| |||| ||||    
T  24702164 ttgttgacgttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaaatccttttgtcgtgcctgagacgaaattgaa 24702263  T
Q  105 ctggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatgg 204  Q
    ||  |||||||||||| |||| ||| || |||||||||||| |||||||||| |  ||  | |||||||||||||||||||||| |||| |  |||||||    
T  24702264 cttatgtagggcttttcgctttaagtatggtcatcattaataaaaaggtcgtttcgattccaactttgttttcattttgtgcttcttcttg-gaaaatgg 24702362  T
Q  205 taatac 210  Q
    ||||||    
T  24702363 taatac 24702368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 20278392 - 20278192
Alignment:
Q  15 tccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn-------ttctttcatcccgcccgagatgaaagtgaactg 107  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||||              | ||||| | ||||||||||||||||||| ||     
T  20278392 tccttccgctactttttgttcaattaatgtttgtttgttgcttttagcttttcaaaaaaaaaaaacatcctttcgttccgcccgagatgaaagtgatctt 20278293  T
Q  108 gtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggta 206  Q
    |||||||||||||||||| ||| ||| | |||||||||| |||||||||| || ||| ||||||| |||| ||||||||||||||||   ||||||||||    
T  20278292 gtgtagggctttttgctttaagtattggccatcattaataaaaaggtcgttttgatcccgactttatttt-attttgtgctttttct--gaaaaatggta 20278196  T
Q  207 atac 210  Q
    ||||    
T  20278195 atac 20278192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 3762802 - 3762672
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | |||||| || || |||||||||||||||   | ||| ||||||||||||||||||||| ||| ||| ||||||||||||    
T  3762802 ctttcgtcccacccgagacggaagtgagcttgtttagggctttttgcttttcgtattttcatcattaatgaaaaggtcg-cttgatcccgactttgtttt 3762704  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  3762703 -attttgtgctttttct-ggaaaaatggtaatac 3762672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 20614585 - 20614682
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| |||||||||||||||| | ||||||||||||||    
T  20614585 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttgtgctttttct-ggaaaaatggtaatac 20614682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 35142440 - 35142565
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||| ||||||  ||||||||| | || ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| |||||    
T  35142440 tcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttatttt 35142538  T
Q  183 gtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||| | ||||||||||||||    
T  35142539 ttgctttttct-ggaaaaatggtaatac 35142565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 24288941 - 24289075
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggcttttt---gcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgt 173  Q
    ||||| |||| |||||| |||||||||||| || ||| |||||||   |||| | | ||| ||||||||||||||| ||||||||  ||| |||||||||    
T  24288941 ctttcgtcccacccgaggtgaaagtgaacttgtttagtgcttttttttgctttatgtattttcatcattaatgaaa-ggtcgtctcgatcccgactttgt 24289039  T
Q  174 tttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||| |||||||||||||||| | ||||||||||||||    
T  24289040 ttttattttgtgctttttct-ggaaaaatggtaatac 24289075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 16277295 - 16277426
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||||||||||  |   ||| |||||||||||||||||||||||||  || |||| || ||||    
T  16277295 ctttcgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaaaggtcgtcttggtcccgaccttctttt 16277394  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  16277395 -attttgtgctttttct-ggaaaaatggtaatac 16277426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 15949373 - 15949275
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| ||||||||||||||   | ||||||||||||||    
T  15949373 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttgtgcttttttctggaaaaatggtaatac 15949275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 30689670 - 30689547
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||| ||||||||||||||||| |  | ||||||||||||||| | | ||| ||||||||| || |||||||| ||| ||| |||||||||||| |||||    
T  30689670 tcccacccgagatgaaagtgaattcatctagggctttttgctttatgtattttcatcattagtg-aaaggtcg-cttgatcccgactttgtttt-atttt 30689574  T
Q  183 gtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| | ||||||||||||||    
T  30689573 gtgctttttct-ggaaaaatggtaatac 30689547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 42570849 - 42570752
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| | ||||| |||||||||||||||| | ||||||||||||||    
T  42570849 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgacctcgtttttattttgtgctttttct-ggaaaaatggtaatac 42570752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 24693401 - 24693460
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||| ||||||||||  | |||||||||||||||||    
T  24693401 ttctttaatcattctcaaatatctgcatgatcataacttgtacttacttgtcaaaatcaa 24693460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 25498514 - 25498576
Alignment:
Q  148 aaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||| || ||| |||| ||||||| |||||||||||||||| ||||||||||||||||    
T  25498514 aaaggtcgttttgatcccgaccttgtttttattttgtgctttttctggaaaaaatggtaatac 25498576  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 20278172 - 20278116
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaat 287  Q
    ||||||||||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  20278172 ttctttaatcattctcatatatctgcataatcataacttgtacttacttgtcaaaat 20278116  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 21856318 - 21856208
Alignment:
Q  98 aagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaa 197  Q
    ||||||||| || ||||||||| ||||  |   ||| |||||||||||||||||||||||||  || |||| || |||| |||||||||||||||| | |    
T  21856318 aagtgaacttgtttagggctttatgctgtatctattttcatcattaatgaaaaggtcgtcttggtcccgaccttctttt-attttgtgctttttct-gga 21856221  T
Q  198 aaaatggtaatac 210  Q
    |||||||||||||    
T  21856220 aaaatggtaatac 21856208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 21116876 - 21116972
Alignment:
Q  112 agggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    |||||||||||||| | | ||| |||||||||||| |||||||||||  ||| |||| ||||||| ||||||||||||||   | ||||||||||||||    
T  21116876 agggctttttgctttatgtattctcatcattaatg-aaaggtcgtctcgatcccgaccttgtttt-attttgtgcttttttgtggaaaaatggtaatac 21116972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 24702394 - 24702448
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaa 285  Q
    |||||||||||||||||||||| ||||| ||||||||||  | ||||||||||||    
T  24702394 ttctttaatcattctcaaatatctgcatgatcataacttgtacttacttgtcaaa 24702448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 78 - 292
Target Start/End: Original strand, 49 - 260
Alignment:
Q  78 tttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttc 177  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||| || ||| |||||||||||||    
T  49 tttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgcttcatgcattgtcatcattaataaaaaggtcgttttgatcccgactttgttttc 148  T
Q  178 attttgtgctttttctagaaaaaatggtaatacnnnnnnnnnnnnnnnnnntcttctttaatcattctcaaatatttgcataatcataactttcatttac 277  Q
    |||||||||||||  |  |||||||||||||||                  |||||||||||||||||||||||| ||||||||||||||||  | ||||    
T  149 attttgtgcttttcttgaaaaaaatggtaatac---aaaaaaccaaaaaaatcttctttaatcattctcaaatatctgcataatcataacttgtacttac 245  T
Q  278 ttgtcaaaatcaaca 292  Q
    || ||||||||||||    
T  246 ttttcaaaatcaaca 260  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 3385856 - 3385647
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn-------ttctttcatcccgcccgagatgaaag 100  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||| |||||||||||               | ||||| ||||||||||||||||||    
T  3385856 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgattttcgcttttaaaaaaaaaaaaaaatcctttcgtcccgcccgagatgaaag 3385757  T
Q  101 tgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttt-tctagaaaa 199  Q
    ||| || |||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||| ||| | |||    
T  3385756 tgatcttgtgtagggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgttttcattttgtgcttttctct-ggaaa 3385658  T
Q  200 aatggtaatac 210  Q
    |||||||||||    
T  3385657 aatggtaatac 3385647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 20557123 - 20557338
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn------ttctttcatcccgcccgagatgaa 98  Q
    ||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||||              |  |||| ||||||||||||||||    
T  20557123 ttgttgacgtacattccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttaaaaaaaaaaaacatcatttcgtcccgcccgagatgaa 20557222  T
Q  99 agtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcat---tttgtgctttttctag 195  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||  |   |||||||||||||| |    
T  20557223 agtgaactgatgtagggctttttgctttaagatttgtcatcattaataaaaaggtcgtcttgatctcgactttgtttttttaaatttgtgctttttcttg 20557322  T
Q  196 -aaaaaatggtaatac 210  Q
     |||||||||||||||    
T  20557323 gaaaaaatggtaatac 20557338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 9187604 - 9187815
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnntt-----------ctttcatcccgcccgagatg 96  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||        |           ||||| ||||||||||||||    
T  9187604 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttcaaaaaaaataaaaataaatcctttcgtcccgcccgagatg 9187703  T
Q  97 aaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctaga 196  Q
    ||||| | || |||||||| ||||||||| ||||||||||||||||||| |||||||||| || ||| |||||||||||| |||||||||||||||  |     
T  9187704 aaagttatcttgtgtagggttttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt-attttgtgctttttc-cgg 9187801  T
Q  197 aaaaatggtaatac 210  Q
    ||||||||||||||    
T  9187802 aaaaatggtaatac 9187815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 16365005 - 16365138
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  16365005 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 16365104  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | |||||||||||||||| |  |||||||||||||    
T  16365105 ttattttgtgctttttcttg-gaaaatggtaatac 16365138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 22708177 - 22708310
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaat-gaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| || ||| |||||||| ||    
T  22708177 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgctt 22708276  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | |||||||||||||||| |  |||||||||||||    
T  22708277 ttattttgtgctttttcttg-gaaaatggtaatac 22708310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 16724077 - 16723960
Alignment:
Q  92 agatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgcttttt 191  Q
    |||||||||||||||  |||||||||||||||||  || ||||||||| ||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  16724077 agatgaaagtgaacttatgtagggctttttgctttgagcattgtcatctttaataaaaaggtcgttttgatcccgactttgttttcattttgtgcttttt 16723978  T
Q  192 ctagaaaaaatggtaatac 210  Q
    || |  |||||||||||||    
T  16723977 cttg-gaaaatggtaatac 16723960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 14874151 - 14874282
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||| |||||||||||  ||||||| ||||||||| ||| || |||||||||||| |||||||||| || ||| ||||||| ||||    
T  14874151 ctttcgtcccgcccgagacgaaagtgaacttatgtagggatttttgctttaagtatagtcatcattaataaaaaggtcgttttgatcccgactttatttt 14874250  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  14874251 -attttgtgctttttct-ggaaaaatggtaatac 14874282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 15571014 - 15570886
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||||||| |||  ||||||||||  ||||||||||||||||| ||| ||||||||| ||||| || ||||||| || ||| ||||||||||||||||||    
T  15571014 tcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagaggtcgttttgatcccgactttgttttcatttt 15570915  T
Q  183 gtgct-ttttctagaaaaaatggtaatac 210  Q
    ||||| |||||| | ||||||||||||||    
T  15570914 gtgcttttttcttggaaaaatggtaatac 15570886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 15575142 - 15575014
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||||||| |||  ||||||||||  ||||||||||||||||| ||| ||||||||| ||||| || ||||||| || ||| ||||||||||||||||||    
T  15575142 tcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagaggtcgttttgatcccgactttgttttcatttt 15575043  T
Q  183 gtgct-ttttctagaaaaaatggtaatac 210  Q
    ||||| |||||| | ||||||||||||||    
T  15575042 gtgcttttttcttggaaaaatggtaatac 15575014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 14921601 - 14921732
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||| ||| |||||||||||  ||||||||||||||||| ||| ||||||||| ||||| || ||||||  || ||| ||||||||||||    
T  14921601 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagaggtcgctttgatcccgactttgtttt 14921700  T
Q  177 cattttgtgc-tttttctagaaaaaatggtaa 207  Q
    |||||||||| ||||||| | |||||||||||    
T  14921701 cattttgtgcttttttcttggaaaaatggtaa 14921732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 3360688 - 3360744
Alignment:
Q  234 tttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  3360688 tttaatcattttcaaatatctgcataatcataattttcatttacttgtcaaaatcaa 3360744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 8099431 - 8099334
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| | ||||| |||||||||||||||| | ||||||||||||||    
T  8099431 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgacctcgtttttattttgtgctttttct-ggaaaaatggtaatac 8099334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 15898798 - 15898719
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgt 156  Q
    ||||| |||||||| ||| |||||||||||  ||||||||||||||||| ||| ||||||||| ||||| ||||||||||    
T  15898798 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaaaaggtcgt 15898719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 22708329 - 22708388
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  22708329 ttctttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 22708388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 3831971 - 3831912
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||| ||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  3831971 ttctataatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 3831912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 20557360 - 20557419
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| |||||||||||||| |  | |||||||||||||||||    
T  20557360 ttctttaatcattctcaaatatctgcataatcataacctatacttacttgtcaaaatcaa 20557419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 26216960 - 26216831
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| | ||||||||| || ||||||| |||||||   | ||| |||||||||| |||| ||||| ||| ||| ||||||||||||    
T  26216960 ctttcgtcccacccgagacggaagtgaacttgtttagggctctttgcttttcgtattttcatcattaaggaaa-ggtcg-cttgatcccgactttgtttt 26216863  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |||||||||||||||| | ||||||||||||||    
T  26216862 -attttgtgctttttct-ggaaaaatggtaatac 26216831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 9187837 - 9187900
Alignment:
Q  229 tcttctttaatcattctcaa--atatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||||||  |||||||||||||||||||||    |||||||||||||||||    
T  9187837 tcttctttaatcattctcaaatatatttgcataatcataacttgtccttacttgtcaaaatcaa 9187900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 16365155 - 16365195
Alignment:
Q  229 tcttctttaatcattctcaaatatttgcataatcataactt 269  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  16365155 tcttctttaatcattctcaaatatctgcataatcataactt 16365195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 12509261 - 12509202
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||  ||||| ||||||| ||||||||||| |||||||||||| ||||||    
T  12509261 ttctttaatcatttccaaatgtttgcatgatcataacttttatttacttgtcagaatcaa 12509202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 16723935 - 16723882
Alignment:
Q  237 aatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||| | ||||||||||||||||  | |||||||||||||||||    
T  16723935 aatcattctcaaatgtctgcataatcataacttgtacttacttgtcaaaatcaa 16723882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 14874299 - 14874362
Alignment:
Q  229 tcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    ||||||| |||| ||||||||||| ||||||||||||||||  | |||||  ||||||||||||    
T  14874299 tcttcttcaatccttctcaaatatctgcataatcataacttgtacttactcttcaaaatcaaca 14874362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 15570867 - 15570813
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||| ||  | |||||||||||||||||    
T  15570867 taatcattttcaaatatctgcataatcataatttgtacttacttgtcaaaatcaa 15570813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 15574995 - 15574941
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||| ||  | |||||||||||||||||    
T  15574995 taatcattttcaaatatctgcataatcataatttgtacttacttgtcaaaatcaa 15574941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 8660676 - 8660717
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgttt 46  Q
    ||||| |||| ||||||||||||||| |||||||||||||||    
T  8660676 ttgtttatgtcccttccgctactttttgttcaaataatgttt 8660717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 12512279 - 12512411
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| ||||||||||| || ||||||||||| ||| | | ||| ||||||||||| |||   |||  || ||| ||||||||||||    
T  12512279 ctttcgtcccacccgagacgaaagtgaacttgtttagggctttttcctttacgtattttcatcattaataaaataatcgctttgatcccgactttgtttt 12512378  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |  |||||||| |||| |  |||||||||||||    
T  12512379 taccttgtgcttgttcttg-gaaaatggtaatac 12512411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12512433 - 12512489
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaat 287  Q
    |||||||||||||  ||||| |||| |||||||||||| | |||||||||| |||||    
T  12512433 ttctttaatcatttccaaatgtttgtataatcataactcttatttacttgtaaaaat 12512489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 14984 - 15117
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || || ||| | |||||| |||    
T  14984 ctttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaaggttgttttgatcccaactttgtttt 15083  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | |||||||||||||||| | ||||||||||||||    
T  15084 ttattttgtgctttttct-ggaaaaatggtaatac 15117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 15143 - 15198
Alignment:
Q  235 ttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  15143 ttaatcattctcaaatatctgcataatcataacttatacttacttgtcaaaatcaa 15198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 11935 - 11802
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaa-aggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||| || ||| ||||||||| |    
T  11935 ctttcgtcccgcccgagatgatagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaagtggtcgttttgatcccgactttgtct 11836  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    |||||||||||||||||| |  |||||||||||||    
T  11835 tcattttgtgctttttcttg-gaaaatggtaatac 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 11784 - 11728
Alignment:
Q  234 tttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||| |||||||| ||||||||||||||||  |||||||||||||| ||||    
T  11784 tttaatcattgtcaaatatctgcataatcataacttgtatttacttgtcaaagtcaa 11728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 191536 - 191412
Alignment:
Q  83 tcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcatttt 182  Q
    |||||||||||| ||||||||||| ||||||  |||||||||| ||| ||||||||||||||| |||||||||| || | | |||||||||||| |||||    
T  191536 tcccgcccgagacgaaagtgaacttgtgtagaactttttgctttaagcattgtcatcattaataaaaaggtcgttttgaccccgactttgtttttatttt 191437  T
Q  183 gtgctttttctagaaaaaatggtaa 207  Q
    ||||||||||| | |||||||||||    
T  191436 gtgctttttcttggaaaaatggtaa 191412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 191387 - 191328
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| |||||||||||||  |  | |||||||||||||||||    
T  191387 ttctttaatcattctcaaatatatgcataatcataatctatacttacttgtcaaaatcaa 191328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 886 - 787
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  886 ctttcgtcccacccgagatgaaagtgaactggtgtcgggctttttgctttaagaattgtcatcattaataaaaaggtcgttttgatcccgactttgtttt 787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 955 - 901
Alignment:
Q  5 ttgttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgctttt 59  Q
    ||||||| |||| ||| ||||||||| |||||||| |||||||||||||||||||    
T  955 ttgttgacgttcattcggctactttttgttcaaatgatgtttgtttgttgctttt 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 735 - 697
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactt 269  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  735 ttctttaatcgttctcaaatatctgcataatcataactt 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 32100 - 32231
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||  || |||||||| |||||| |||||| ||| || ||| ||||||| ||||    
T  32100 ctttcgtcccgcccgagatgaaagtgaactggtgaagggctttttgcttttagcattgtcataattaataaaaaggccgttttgatcccgactttatttt 32199  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     ||||||||||||||| || ||||||||||||||    
T  32200 -attttgtgctttttc-aggaaaaatggtaatac 32231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 32246 - 32305
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  32246 ttctttaatcattctcatatatctgcataatcataacttgtacttacttgtcaaaatcaa 32305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 3665 - 3457
Alignment:
Q  8 ttgatgttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttcnnnnnnn--------ttctttcatcccgcccgagatgaaa 99  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||                | ||||| || ||||||||||||||    
T  3665 ttgacgttccttccgctactttttgttcaattaatgtttgtttgttgcttttcgcttttaaaaaaaaaaaaaacatcctttcgtctcgcccgagatgaaa 3566  T
Q  100 gtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaa 198  Q
    |||| || |||||||||||||||||| ||| ||| |||||||||||| |||||||||| || ||| | ||||| |||| ||||||||||||||||   ||    
T  3565 gtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaaaggtcgttttgatcccaactttatttt-attttgtgctttttct--gaa 3469  T
Q  199 aaatggtaatac 210  Q
    ||||||||||||    
T  3468 aaatggtaatac 3457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 3433 - 3396
Alignment:
Q  232 tctttaatcattctcaaatatttgcataatcataactt 269  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  3433 tctttaatcattctcatatatttgcgtaatcataactt 3396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 17694 - 17796
Alignment:
Q  14 ttccttccgctacttttcgttcaaataatgtttgtttgttgcttttcgcttttc-nnnnnnnttctttcatcccgcccgagatgaaagtgaactggtgta 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||        | ||||| ||||||||||||||||||||||||||||||    
T  17694 ttccttccgctactttttgttcaaataatgtttgtttgttgcttttcgcttttcaaaaaacatcctttcgtcccgcccgagatgaaagtgaactggtgta 17793  T
Q  113 ggg 115  Q
    |||    
T  17794 ggg 17796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 17863 - 17924
Alignment:
Q  229 tcttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||||| | ||||||||||||||  | |||||||||||||||||    
T  17863 tcttctttaatcattctcaaatatctacataatcataacttgtacttacttgtcaaaatcaa 17924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 32559 - 32695
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttt 175  Q
    ||||| |||||||||||| |||||||||||  ||||||||||||||| | |||||||| |||||||||| |||||||||| || ||| |||||||| |||    
T  32559 ctttcgtcccgcccgagacgaaagtgaacttatgtagggctttttgcattaagaattgccatcattaataaaaaggtcgttttgatcccgactttgtttt 32658  T
Q  176 tcattttgtgc--tttttctagaaaaaatggtaatac 210  Q
    | |||||||||  |||||||  |||||||||||||||    
T  32659 ttattttgtgctttttttctgaaaaaaatggtaatac 32695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 32710 - 32767
Alignment:
Q  232 tctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatca 289  Q
    ||||| ||||||||||||||| ||||||||||||||||  | |||||||| |||||||    
T  32710 tcttttatcattctcaaatatctgcataatcataacttgtacttacttgtaaaaatca 32767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 758 - 873
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||| | ||||||||||||||||||||||||||||| |||| ||  ||||||||||||||| |||||||||| || ||| | | ||||||||    
T  758 ctttcgtcccgcacaagatgaaagtgaactggtgtagggctttt-gctttaaagattgtcatcattaataaaaaggtcgttttgatcccaattttgtttt 856  T
Q  177 cattttgtgctttttct 193  Q
    |||||||||||||||||    
T  857 cattttgtgctttttct 873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 908 - 967
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  908 ttctttaatcattctcaaatatctgcataatcataacttgtacttacttgtcaaaatcaa 967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 183299 - 183245
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||||||  |  ||||||||||||||||    
T  183299 taatcattttcaaatatctgcataatcataacttatacatacttgtcaaaatcaa 183245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 18452 - 18583
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaatt-gtcatcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||  || ||| |||||||||||| |||||||||| || ||  ||||||| |||    
T  18452 ctttcgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttgagtattggtcatcattaataaaaaggtcgttttgattccgactttattt 18551  T
Q  176 tcattttgtgctttttctagaaaaaatggtaatac 210  Q
    | ||||||||||||||||   ||||||||||||||    
T  18552 t-attttgtgctttttct--gaaaaatggtaatac 18583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 18600 - 18659
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    ||||||||||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  18600 ttctttaatcattctcatatatgtgcataatcataacttgtacttacttgtcaaaatcaa 18659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 18403 - 18437
Alignment:
Q  32 gttcaaataatgtttgtttgttgcttttcgctttt 66  Q
    |||||| ||||||||||||||||||||||||||||    
T  18403 gttcaattaatgtttgtttgttgcttttcgctttt 18437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 7214 - 7351
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||||||| ||| |||||||||||  ||||||||||||||||| ||| || |||||| ||||| |||||||||| || ||| ||||||||||||    
T  7214 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagtatcgtcatcgttaataaaaaggtcgttttgatcccgactttgtttt 7313  T
Q  177 -cattttgtgcttttt---ctagaaaaaatggtaatac 210  Q
     ||||||||| |||||   || | ||||||||||||||    
T  7314 tcattttgtgtttttttttcttggaaaaatggtaatac 7351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 7369 - 7424
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaa 286  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  7369 ttctttaatcattctcaaatatccacataatcataactttcatttacttgtcaaaa 7424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 75420 - 75556
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttg-ttt 175  Q
    ||||| |||||||| ||| |||||||||||  ||||||||||||||||| ||| || |||||| ||||| |||||||||| || ||| | |||||| |||    
T  75420 ctttcgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcatcgtcatcgttaataaaaaggtcgttttgatcccaactttgtttt 75519  T
Q  176 tcattttgtg--ctttttctagaaaaaatggtaatac 210  Q
    ||||||||||   ||||||| | ||||||||||||||    
T  75520 tcattttgtgttttttttcttggaaaaatggtaatac 75556  T

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Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 75579 - 75624
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgt 281  Q
    |||||||||| |||| | |||||||||||||||||| |||||||||    
T  75579 taatcattcttaaatgtctgcataatcataactttcgtttacttgt 75624  T

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Target: scaffold0027 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 59788 - 59691
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||| |||| ||||||| |||||||||||||||| | ||||||||||||||    
T  59788 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgtcttgatcccgaccttgtttttattttgtgctttttct-ggaaaaatggtaatac 59691  T

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Target: scaffold0019 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 16828 - 16730
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||| || ||| |||||||||||| ||||| ||||| |||| |  |||||||||||||    
T  16828 tagggctttttgctttaagaattttcatcattaataaaaaggtcgttttgatcccgactttgtttttattttttgcttcttcttg-gaaaatggtaatac 16730  T

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Target: scaffold0019; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 16713 - 16654
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||||||||||| ||||| ||||||||||  | |||||||||||||||||    
T  16713 ttctttaatcattctcaaatatctgcatgatcataacttgtacttacttgtcaaaatcaa 16654  T

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Target: scaffold0016 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 19520 - 19594
Alignment:
Q  135 tcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| ||||||||  ||| |||||||||||| |||||||||||||||| ||||||||||||||||    
T  19520 tcatcattaatgaaa-ggtcgtctcgatcccgactttgtttttattttgtgctttttctggaaaaaatggtaatac 19594  T

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Target: scaffold0002 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 125594 - 125691
Alignment:
Q  111 tagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||||||| | | ||| ||||||||||||||| ||||| ||| ||| |||| ||||||| |||||||||||||||| | ||||||||||||||    
T  125594 tagggctttttgctttatgtattttcatcattaatgaaa-ggtcgacttgatcccgaccttgtttttattttgtgctttttct-ggaaaaatggtaatac 125691  T

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Target: scaffold0582 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 4378 - 4324
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||    
T  4378 taatcattttcaaatatctgcataatcataactttcatttactcgtcaaaatcaa 4324  T

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Target: scaffold0582; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 4529 - 4406
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtc-atcattaatgaaaaggtcgtcttaatctcgactttgttt 175  Q
    ||||| ||||||| |||| |||||||||||  | ||||||||||||||| | | ||  || ||||||||| ||||| |||  |  ||| |||||||||||    
T  4529 ctttcgtcccgcctgagacgaaagtgaactcatttagggctttttgcttcatgcatcttccatcattaataaaaag-tcgattcgatcccgactttgttt 4431  T
Q  176 tcattttgtgctttttctagaaaaa 200  Q
    | |||||||||||||||||||||||    
T  4430 ttattttgtgctttttctagaaaaa 4406  T

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Target: scaffold0551 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 9353 - 9297
Alignment:
Q  236 taatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaaca 292  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||    
T  9353 taatcattgtcaaatgtctgcataatcataactttcatttacttgtcaaagtcaaca 9297  T

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Target: scaffold0551; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 9405 - 9357
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgctt 125  Q
    ||||| |||||||||||| |||||||||||  |||||||||||||||||    
T  9405 ctttcgtcccgcccgagacgaaagtgaactcatgtagggctttttgctt 9357  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 166012 - 166086
Alignment:
Q  135 tcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||||||| |||| ||||  || ||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  166012 tcatcattaattaaaaagtcgctttgatcccgactttgtttttattttgtgctttttctag-aaaaatggtaatac 166086  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 153017 - 153140
Alignment:
Q  86 cgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgt-catcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgt 184  Q
    ||||||||| ||||||||||| ||||||||||||||||||   | ||| | |||||||||| |||| | ||| || ||| |||| ||| ||||||||| |    
T  153017 cgcccgagacgaaagtgaacttgtgtagggctttttgcttcttgtattttccatcattaattaaaaagccgttttgatcccgaccttg-tttcattttat 153115  T
Q  185 gctttttctagaaaaaatggtaatac 210  Q
    ||||||||| | ||||||||||||||    
T  153116 gctttttct-ggaaaaatggtaatac 153140  T

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Target: scaffold0389 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 3546 - 3685
Alignment:
Q  75 ttctttcatcccgcccgagatgaaagtgaactggtgtagggcttttt-----gcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgact 169  Q
    |||||||||||| ||||||| | ||||||||| || ||||| |||||     ||||   | ||| |||||||||||  |||||||||||| ||| ||||     
T  3546 ttctttcatcccacccgagacggaagtgaacttgtttagggtttttttttttgctttgtgtattttcatcattaattgaaaggtcgtcttgatcccgacc 3645  T
Q  170 ttgttttcattttgtgctttttctagaaaaaatggtaatac 210  Q
    ||||||| |||||||| ||||||| ||||||||||| ||||    
T  3646 ttgtttt-attttgtgttttttctggaaaaaatggttatac 3685  T

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Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 70839 - 70730
Alignment:
Q  98 aagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctagaa 197  Q
    ||||||||| || ||||||||||||||| | | ||| |||||| ||||| |||||||||||  ||| | || ||||||| |||||||||||||||| | |    
T  70839 aagtgaacttgtttagggctttttgctttatgtattttcatcactaatg-aaaggtcgtctcgatcccaaccttgtttt-attttgtgctttttct-gga 70743  T
Q  198 aaaatggtaatac 210  Q
    |||||||||||||    
T  70742 aaaatggtaatac 70730  T

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Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 11216 - 11275
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||||||  ||||| ||||||| ||||||||||| |||||||||||| ||||||    
T  11216 ttctttaatcatttccaaatgtttgcatgatcataacttttatttacttgtcagaatcaa 11275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 8628 - 8496
Alignment:
Q  77 ctttcatcccgcccgagatgaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgtttt 176  Q
    ||||| |||| ||||||| ||||||||||| || ||||||||||| ||| | | ||| ||||||||||| |||   |||  || ||| ||||||||||||    
T  8628 ctttcgtcccacccgagacgaaagtgaacttgtttagggctttttcctttacgtattttcatcattaataaaataatcgctttgatcccgactttgtttt 8529  T
Q  177 cattttgtgctttttctagaaaaaatggtaatac 210  Q
     |  |||||||| |||| |  |||||||||||||    
T  8528 taccttgtgcttgttcttg-gaaaatggtaatac 8496  T

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Target: scaffold0157; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 8474 - 8418
Alignment:
Q  231 ttctttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaat 287  Q
    |||||||||||||  ||||| |||| |||||||||||| | |||||||||| |||||    
T  8474 ttctttaatcatttccaaatgtttgtataatcataactcttatttacttgtaaaaat 8418  T

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Target: scaffold0605 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 5003 - 4892
Alignment:
Q  96 gaaagtgaactggtgtagggctttttgcttgaagaattgtcatcattaatgaaaaggtcgtcttaatctcgactttgttttcattttgtgctttttctag 195  Q
    ||||||||| | || |||||||| |||||| | | ||| |||| ||| |||||| ||||||||| ||| |||| ||||||| |||||||||||||||| |    
T  5003 gaaagtgaatttgtttagggcttcttgctttatgtattttcattattgatgaaa-ggtcgtcttgatcccgaccttgtttt-attttgtgctttttct-g 4907  T
Q  196 aaaaaatggtaatac 210  Q
     ||||||||||||||    
T  4906 gaaaaatggtaatac 4892  T

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Target: scaffold0125 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 12647 - 12703
Alignment:
Q  234 tttaatcattctcaaatatttgcataatcataactttcatttacttgtcaaaatcaa 290  Q
    |||||||||| |||| ||| ||||||||||||||||  | ||||| |||||||||||    
T  12647 tttaatcattttcaattatctgcataatcataacttatacttactcgtcaaaatcaa 12703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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