View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4607_low_8 (Length: 278)
Name: NF4607_low_8
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4607_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31060118 - 31060394
Alignment:
| Q |
1 |
ttcattcacaagagtcgcatattgaagccctaactaattgcttaaggggctcaaaatctcttaccatttaaactaatttattgctggtattgcaatatta |
100 |
Q |
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| T |
31060118 |
ttcattcacaagagtcgcatattgaatcc-taactaattgcttaaggggctcaaaatctcttaccatttaaaccaatttattgatggtattgcaatatta |
31060216 |
T |
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| Q |
101 |
ataccaataccgaagaataaatatattttttgtggctaaccctctagttccaaggtgacgagtgtgttagtaattcggagttcgatcagaagataagtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
31060217 |
ataccaataccgaagaataaatatattttttgtggctaaccctctagttccaaggtgacgagtgtcttagtaattcggagttcaattagaagataagtaa |
31060316 |
T |
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| Q |
201 |
aatctaaccttaaattgcttcgctcataaatcaaacttgagttctctcgaacgattcgtcctaacggctcattaacca |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31060317 |
aatctaaccttaaattgcttcgctcataaatcaaacttcagttctctcgaacgattcgtcctaacggctcattaacca |
31060394 |
T |
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